Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00295

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00294 and MPMX19_00295 overlap by 4 nucleotidesMPMX19_00295 and MPMX19_00296 are separated by 236 nucleotides MPMX19_00294: MPMX19_00294 - Adaptive-response sensory-kinase SasA, at 293,488 to 294,945 _00294 MPMX19_00295: MPMX19_00295 - Transcriptional regulatory protein QseB, at 294,942 to 295,655 _00295 MPMX19_00296: MPMX19_00296 - (S)-sulfolactate dehydrogenase, at 295,892 to 296,845 _00296 Position (kb) 294 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 294.221 kb on + strand, within MPMX19_00294at 294.222 kb on - strand, within MPMX19_00294at 294.509 kb on + strand, within MPMX19_00294at 294.509 kb on + strand, within MPMX19_00294at 294.510 kb on - strand, within MPMX19_00294at 294.510 kb on - strand, within MPMX19_00294at 294.510 kb on - strand, within MPMX19_00294at 294.548 kb on + strand, within MPMX19_00294at 294.548 kb on + strand, within MPMX19_00294at 294.548 kb on + strand, within MPMX19_00294at 294.548 kb on + strand, within MPMX19_00294at 294.548 kb on + strand, within MPMX19_00294at 294.549 kb on - strand, within MPMX19_00294at 294.549 kb on - strand, within MPMX19_00294at 294.549 kb on - strand, within MPMX19_00294at 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.836 kb on + strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.837 kb on - strandat 294.873 kb on + strandat 294.874 kb on - strandat 294.874 kb on - strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.120 kb on + strand, within MPMX19_00295at 295.120 kb on + strand, within MPMX19_00295at 295.121 kb on - strand, within MPMX19_00295at 295.121 kb on - strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.831 kb on + strandat 295.832 kb on - strandat 295.832 kb on - strandat 295.832 kb on - strandat 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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294,221 + MPMX19_00294 0.50 +0.7
294,222 - MPMX19_00294 0.50 +1.9
294,509 + MPMX19_00294 0.70 +0.7
294,509 + MPMX19_00294 0.70 -1.7
294,510 - MPMX19_00294 0.70 -2.3
294,510 - MPMX19_00294 0.70 -2.2
294,510 - MPMX19_00294 0.70 -0.3
294,548 + MPMX19_00294 0.73 -0.7
294,548 + MPMX19_00294 0.73 +0.7
294,548 + MPMX19_00294 0.73 +0.8
294,548 + MPMX19_00294 0.73 -0.0
294,548 + MPMX19_00294 0.73 -0.1
294,549 - MPMX19_00294 0.73 -1.1
294,549 - MPMX19_00294 0.73 -1.3
294,549 - MPMX19_00294 0.73 +0.7
294,836 + -0.1
294,836 + -0.5
294,836 + -2.6
294,836 + -0.8
294,836 + -2.5
294,836 + -0.2
294,836 + -0.3
294,836 + -1.7
294,836 + -1.2
294,836 + +0.4
294,836 + +1.7
294,836 + -2.0
294,836 + -0.5
294,836 + -0.3
294,836 + +0.0
294,836 + -0.3
294,836 + +0.9
294,836 + -0.2
294,836 + +0.1
294,836 + +0.5
294,836 + -0.5
294,836 + -1.3
294,836 + +0.5
294,836 + -1.0
294,836 + -1.7
294,836 + -0.7
294,837 - -1.3
294,837 - +0.1
294,837 - -0.3
294,837 - -0.5
294,837 - -0.5
294,837 - -0.0
294,837 - -1.2
294,837 - +0.3
294,837 - +0.5
294,837 - +0.1
294,837 - +0.7
294,837 - -0.8
294,837 - -0.9
294,873 + +0.5
294,874 - +0.4
294,874 - +0.1
295,003 + -0.1
295,003 + +0.5
295,003 + -1.0
295,003 + -0.2
295,003 + -0.0
295,003 + -0.6
295,003 + +0.7
295,003 + -0.3
295,003 + +0.7
295,003 + -1.3
295,003 + +0.1
295,004 - +1.7
295,004 - +0.3
295,004 - +0.1
295,004 - -0.6
295,004 - -0.7
295,004 - -0.8
295,120 + MPMX19_00295 0.25 -0.1
295,120 + MPMX19_00295 0.25 -0.1
295,121 - MPMX19_00295 0.25 +0.3
295,121 - MPMX19_00295 0.25 +0.7
295,363 + MPMX19_00295 0.59 -1.5
295,363 + MPMX19_00295 0.59 -0.4
295,363 + MPMX19_00295 0.59 -0.3
295,363 + MPMX19_00295 0.59 -1.0
295,363 + MPMX19_00295 0.59 -1.5
295,363 + MPMX19_00295 0.59 -0.8
295,363 + MPMX19_00295 0.59 -0.7
295,363 + MPMX19_00295 0.59 -0.8
295,363 + MPMX19_00295 0.59 -0.2
295,363 + MPMX19_00295 0.59 -1.1
295,363 + MPMX19_00295 0.59 -0.7
295,364 - MPMX19_00295 0.59 -0.6
295,364 - MPMX19_00295 0.59 -1.3
295,364 - MPMX19_00295 0.59 -1.1
295,364 - MPMX19_00295 0.59 -0.4
295,364 - MPMX19_00295 0.59 -0.9
295,364 - MPMX19_00295 0.59 -1.9
295,831 + -2.8
295,832 - -1.3
295,832 - +0.5
295,832 - -0.5
296,064 + MPMX19_00296 0.18 -1.9
296,064 + MPMX19_00296 0.18 +0.3
296,064 + MPMX19_00296 0.18 +0.2
296,064 + MPMX19_00296 0.18 +0.1
296,064 + MPMX19_00296 0.18 -0.6
296,064 + MPMX19_00296 0.18 -0.7
296,064 + MPMX19_00296 0.18 -0.3
296,064 + MPMX19_00296 0.18 -2.3
296,064 + MPMX19_00296 0.18 -0.7
296,064 + MPMX19_00296 0.18 -1.8
296,064 + MPMX19_00296 0.18 +0.5
296,065 - MPMX19_00296 0.18 -0.7
296,065 - MPMX19_00296 0.18 -2.3
296,065 - MPMX19_00296 0.18 -0.0
296,065 - MPMX19_00296 0.18 -0.9
296,065 - MPMX19_00296 0.18 -1.1
296,065 - MPMX19_00296 0.18 -1.1
296,065 - MPMX19_00296 0.18 -0.0
296,065 - MPMX19_00296 0.18 -1.0
296,065 - MPMX19_00296 0.18 +0.7
296,065 - MPMX19_00296 0.18 -1.3
296,065 - MPMX19_00296 0.18 -0.6
296,065 - MPMX19_00296 0.18 -0.1
296,223 + MPMX19_00296 0.35 +0.6
296,223 + MPMX19_00296 0.35 -0.7
296,223 + MPMX19_00296 0.35 -1.3
296,223 + MPMX19_00296 0.35 -0.6
296,223 + MPMX19_00296 0.35 -1.0
296,224 - MPMX19_00296 0.35 -0.1
296,224 - MPMX19_00296 0.35 +0.5
296,224 - MPMX19_00296 0.35 -0.1
296,224 - MPMX19_00296 0.35 +0.1
296,224 - MPMX19_00296 0.35 -0.1
296,263 + MPMX19_00296 0.39 +0.5
296,263 + MPMX19_00296 0.39 +0.3
296,263 + MPMX19_00296 0.39 -0.9
296,263 + MPMX19_00296 0.39 +0.4
296,263 + MPMX19_00296 0.39 -0.7
296,263 + MPMX19_00296 0.39 -0.2
296,263 + MPMX19_00296 0.39 +0.2
296,264 - MPMX19_00296 0.39 +0.3
296,264 - MPMX19_00296 0.39 -1.7
296,264 - MPMX19_00296 0.39 +0.3
296,264 - MPMX19_00296 0.39 -2.4
296,264 - MPMX19_00296 0.39 -0.3
296,264 - MPMX19_00296 0.39 +0.7
296,264 - MPMX19_00296 0.39 +0.2
296,264 - MPMX19_00296 0.39 -0.0
296,264 - MPMX19_00296 0.39 -2.2
296,264 - MPMX19_00296 0.39 +0.4
296,490 + MPMX19_00296 0.63 -0.7
296,490 + MPMX19_00296 0.63 -0.2
296,490 + MPMX19_00296 0.63 +0.2
296,490 + MPMX19_00296 0.63 -0.6
296,490 + MPMX19_00296 0.63 +0.1
296,490 + MPMX19_00296 0.63 +0.1
296,490 + MPMX19_00296 0.63 -1.5
296,490 + MPMX19_00296 0.63 +0.4
296,490 + MPMX19_00296 0.63 -0.5
296,490 + MPMX19_00296 0.63 -0.3
296,490 + MPMX19_00296 0.63 -2.0
296,490 + MPMX19_00296 0.63 -1.3
296,490 + MPMX19_00296 0.63 -0.3
296,490 + MPMX19_00296 0.63 -0.1
296,490 + MPMX19_00296 0.63 -1.1
296,491 - MPMX19_00296 0.63 +0.8
296,491 - MPMX19_00296 0.63 -0.3
296,491 - MPMX19_00296 0.63 -0.1
296,491 - MPMX19_00296 0.63 -0.3
296,491 - MPMX19_00296 0.63 -0.1
296,491 - MPMX19_00296 0.63 +0.4
296,491 - MPMX19_00296 0.63 -0.1
296,491 - MPMX19_00296 0.63 -1.1
296,491 - MPMX19_00296 0.63 +0.8
296,491 - MPMX19_00296 0.63 -1.4
296,491 - MPMX19_00296 0.63 +0.1
296,491 - MPMX19_00296 0.63 -0.6
296,491 - MPMX19_00296 0.63 -1.1
296,491 - MPMX19_00296 0.63 -1.0

Or see this region's nucleotide sequence