Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05912

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05910 and MPMX19_05911 are separated by 5 nucleotidesMPMX19_05911 and MPMX19_05912 overlap by 4 nucleotidesMPMX19_05912 and MPMX19_05913 overlap by 20 nucleotides MPMX19_05910: MPMX19_05910 - hypothetical protein, at 45,740 to 47,131 _05910 MPMX19_05911: MPMX19_05911 - hypothetical protein, at 47,137 to 47,874 _05911 MPMX19_05912: MPMX19_05912 - hypothetical protein, at 47,871 to 48,512 _05912 MPMX19_05913: MPMX19_05913 - hypothetical protein, at 48,493 to 49,665 _05913 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.337 kb on + strand, within MPMX19_05911at 47.338 kb on - strand, within MPMX19_05911at 47.338 kb on - strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 48.454 kb on + strandat 48.454 kb on + strandat 48.455 kb on - strandat 48.455 kb on - strandat 48.842 kb on + strand, within MPMX19_05913at 48.842 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.236 kb on - strand, within MPMX19_05913at 49.236 kb on - strand, within MPMX19_05913at 49.236 kb on - strand, within MPMX19_05913at 49.344 kb on + strand, within MPMX19_05913at 49.344 kb on + strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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47,337 + MPMX19_05911 0.27 +0.8
47,338 - MPMX19_05911 0.27 -0.0
47,338 - MPMX19_05911 0.27 -0.0
47,393 + MPMX19_05911 0.35 -1.0
47,393 + MPMX19_05911 0.35 +1.7
47,393 + MPMX19_05911 0.35 +1.2
47,393 + MPMX19_05911 0.35 +0.4
47,393 + MPMX19_05911 0.35 +0.1
47,393 + MPMX19_05911 0.35 +0.6
47,394 - MPMX19_05911 0.35 -0.8
47,394 - MPMX19_05911 0.35 -0.0
47,394 - MPMX19_05911 0.35 -0.3
47,394 - MPMX19_05911 0.35 -0.1
47,394 - MPMX19_05911 0.35 +0.5
47,394 - MPMX19_05911 0.35 -0.9
47,911 + -0.7
47,911 + -1.2
47,911 + +0.3
47,911 + +0.1
47,911 + -1.1
47,911 + -0.3
47,911 + -0.5
47,911 + +0.1
47,911 + -0.0
47,911 + -0.2
47,911 + -0.5
47,911 + -0.5
47,911 + -1.0
47,911 + +0.2
47,911 + +0.1
47,911 + -0.2
47,911 + -1.1
47,912 - -0.8
47,912 - -1.8
47,912 - -0.4
47,912 - +0.5
47,912 - -0.7
47,912 - -0.2
47,912 - +0.2
47,912 - -0.7
47,912 - +1.0
47,912 - +0.2
47,912 - +0.1
47,912 - -1.0
47,912 - +0.3
47,912 - +0.6
48,454 + -1.1
48,454 + -0.3
48,455 - -1.1
48,455 - -0.3
48,842 + MPMX19_05913 0.30 +0.0
48,842 + MPMX19_05913 0.30 +0.3
49,064 + MPMX19_05913 0.49 -1.1
49,064 + MPMX19_05913 0.49 +0.6
49,064 + MPMX19_05913 0.49 -0.5
49,064 + MPMX19_05913 0.49 +0.1
49,064 + MPMX19_05913 0.49 -0.6
49,064 + MPMX19_05913 0.49 -0.0
49,064 + MPMX19_05913 0.49 -1.0
49,064 + MPMX19_05913 0.49 -2.1
49,064 + MPMX19_05913 0.49 +0.3
49,065 - MPMX19_05913 0.49 -0.1
49,065 - MPMX19_05913 0.49 -1.3
49,065 - MPMX19_05913 0.49 -0.4
49,065 - MPMX19_05913 0.49 -0.5
49,065 - MPMX19_05913 0.49 -0.9
49,065 - MPMX19_05913 0.49 +0.1
49,065 - MPMX19_05913 0.49 +0.1
49,130 + MPMX19_05913 0.54 -0.3
49,130 + MPMX19_05913 0.54 -0.5
49,130 + MPMX19_05913 0.54 -0.5
49,130 + MPMX19_05913 0.54 -1.3
49,130 + MPMX19_05913 0.54 -0.4
49,130 + MPMX19_05913 0.54 -0.5
49,131 - MPMX19_05913 0.54 +0.9
49,131 - MPMX19_05913 0.54 +0.0
49,131 - MPMX19_05913 0.54 +1.9
49,131 - MPMX19_05913 0.54 +0.4
49,131 - MPMX19_05913 0.54 -1.5
49,235 + MPMX19_05913 0.63 -0.7
49,235 + MPMX19_05913 0.63 -0.3
49,235 + MPMX19_05913 0.63 -1.1
49,235 + MPMX19_05913 0.63 -0.3
49,235 + MPMX19_05913 0.63 -1.2
49,236 - MPMX19_05913 0.63 -0.9
49,236 - MPMX19_05913 0.63 +0.2
49,236 - MPMX19_05913 0.63 -0.5
49,344 + MPMX19_05913 0.73 -0.3
49,344 + MPMX19_05913 0.73 -1.5
49,345 - MPMX19_05913 0.73 -0.1
49,345 - MPMX19_05913 0.73 -1.0
49,345 - MPMX19_05913 0.73 +0.1
49,345 - MPMX19_05913 0.73 -0.3
49,345 - MPMX19_05913 0.73 +0.1
49,345 - MPMX19_05913 0.73 +0.1
49,345 - MPMX19_05913 0.73 -1.8
49,345 - MPMX19_05913 0.73 -0.9

Or see this region's nucleotide sequence