Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05729

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05727 and MPMX19_05728 are separated by 15 nucleotidesMPMX19_05728 and MPMX19_05729 are separated by 25 nucleotidesMPMX19_05729 and MPMX19_05730 are separated by 96 nucleotidesMPMX19_05730 and MPMX19_05731 are separated by 64 nucleotides MPMX19_05727: MPMX19_05727 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 445,843 to 446,823 _05727 MPMX19_05728: MPMX19_05728 - Glyoxylate/hydroxypyruvate reductase B, at 446,839 to 447,792 _05728 MPMX19_05729: MPMX19_05729 - hypothetical protein, at 447,818 to 448,570 _05729 MPMX19_05730: MPMX19_05730 - hypothetical protein, at 448,667 to 449,161 _05730 MPMX19_05731: MPMX19_05731 - hypothetical protein, at 449,226 to 450,509 _05731 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2at 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.863 kb on + strandat 446.863 kb on + strandat 446.863 kb on + strandat 446.864 kb on - strandat 446.864 kb on - strandat 447.692 kb on - strand, within MPMX19_05728at 447.709 kb on + strandat 447.709 kb on + strandat 447.710 kb on - strandat 447.721 kb on + strandat 447.721 kb on + strandat 447.721 kb on + strandat 447.721 kb on + strandat 447.722 kb on - strandat 448.313 kb on + strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.424 kb on + strand, within MPMX19_05729at 448.424 kb on + strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.594 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.611 kb on - strandat 448.611 kb on - strandat 448.611 kb on - strandat 448.631 kb on - strandat 448.631 kb on - strandat 449.429 kb on + strand, within MPMX19_05731at 449.430 kb on - strand, within MPMX19_05731at 449.430 kb on - strand, within MPMX19_05731at 449.430 kb on - strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
446,821 + -0.4
446,821 + +0.0
446,821 + -1.7
446,821 + -0.1
446,821 + -1.1
446,821 + -0.5
446,822 - -0.8
446,822 - -2.2
446,822 - -2.0
446,822 - -0.4
446,822 - -1.1
446,822 - -0.1
446,822 - -0.4
446,822 - -1.0
446,822 - -0.2
446,822 - -1.9
446,822 - -0.1
446,822 - -1.9
446,822 - -1.4
446,863 + +0.5
446,863 + -1.2
446,863 + -0.4
446,864 - +0.1
446,864 - -0.6
447,692 - MPMX19_05728 0.89 +0.0
447,709 + -0.7
447,709 + +0.3
447,710 - +1.3
447,721 + -0.2
447,721 + -0.4
447,721 + -1.0
447,721 + +0.3
447,722 - -1.0
448,313 + MPMX19_05729 0.66 -0.2
448,314 - MPMX19_05729 0.66 +1.4
448,314 - MPMX19_05729 0.66 +1.0
448,314 - MPMX19_05729 0.66 +0.2
448,314 - MPMX19_05729 0.66 +0.1
448,314 - MPMX19_05729 0.66 +0.4
448,314 - MPMX19_05729 0.66 +0.9
448,370 + MPMX19_05729 0.73 +0.1
448,370 + MPMX19_05729 0.73 +0.0
448,370 + MPMX19_05729 0.73 +0.3
448,370 + MPMX19_05729 0.73 -0.7
448,370 + MPMX19_05729 0.73 +0.1
448,370 + MPMX19_05729 0.73 -0.3
448,371 - MPMX19_05729 0.73 +0.4
448,371 - MPMX19_05729 0.73 -0.3
448,371 - MPMX19_05729 0.73 +0.2
448,371 - MPMX19_05729 0.73 -0.4
448,371 - MPMX19_05729 0.73 -0.5
448,371 - MPMX19_05729 0.73 +0.2
448,371 - MPMX19_05729 0.73 -0.7
448,424 + MPMX19_05729 0.80 +1.1
448,424 + MPMX19_05729 0.80 -0.2
448,425 - MPMX19_05729 0.81 +0.8
448,425 - MPMX19_05729 0.81 +0.6
448,425 - MPMX19_05729 0.81 +0.2
448,425 - MPMX19_05729 0.81 -0.7
448,425 - MPMX19_05729 0.81 -0.6
448,594 + -0.4
448,610 + -1.0
448,610 + -0.7
448,610 + +0.1
448,610 + -0.4
448,611 - -2.2
448,611 - +0.3
448,611 - -0.7
448,631 - +2.0
448,631 - -0.4
449,429 + MPMX19_05731 0.16 +0.0
449,430 - MPMX19_05731 0.16 +0.4
449,430 - MPMX19_05731 0.16 +0.6
449,430 - MPMX19_05731 0.16 -0.2
449,431 + MPMX19_05731 0.16 -0.1
449,431 + MPMX19_05731 0.16 -0.8
449,431 + MPMX19_05731 0.16 -1.3
449,431 + MPMX19_05731 0.16 -1.2
449,432 - MPMX19_05731 0.16 +0.4
449,432 - MPMX19_05731 0.16 -0.3
449,432 - MPMX19_05731 0.16 -0.3
449,432 - MPMX19_05731 0.16 -1.1
449,432 - MPMX19_05731 0.16 +0.7

Or see this region's nucleotide sequence