Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05605

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05604 and MPMX19_05605 are separated by 43 nucleotidesMPMX19_05605 and MPMX19_05606 are separated by 160 nucleotidesMPMX19_05606 and MPMX19_05607 are separated by 124 nucleotides MPMX19_05604: MPMX19_05604 - hypothetical protein, at 315,272 to 316,474 _05604 MPMX19_05605: MPMX19_05605 - hypothetical protein, at 316,518 to 316,892 _05605 MPMX19_05606: MPMX19_05606 - hypothetical protein, at 317,053 to 317,445 _05606 MPMX19_05607: MPMX19_05607 - Sensor histidine kinase RcsC, at 317,570 to 320,332 _05607 Position (kb) 316 317Strain fitness (log2 ratio) -2 -1 0 1at 316.112 kb on + strand, within MPMX19_05604at 316.112 kb on + strand, within MPMX19_05604at 316.112 kb on + strand, within MPMX19_05604at 316.112 kb on + strand, within MPMX19_05604at 316.113 kb on - strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.388 kb on + strandat 316.388 kb on + strandat 316.388 kb on + strandat 316.388 kb on + strandat 316.389 kb on - strandat 316.389 kb on - strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.428 kb on - strandat 316.428 kb on - strandat 316.537 kb on + strandat 316.537 kb on + strandat 316.537 kb on + strandat 316.538 kb on - strandat 316.821 kb on + strand, within MPMX19_05605at 316.821 kb on + strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.563 kb on + strandat 317.564 kb on - strandat 317.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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316,112 + MPMX19_05604 0.70 +0.6
316,112 + MPMX19_05604 0.70 -0.5
316,112 + MPMX19_05604 0.70 -2.0
316,112 + MPMX19_05604 0.70 +0.8
316,113 - MPMX19_05604 0.70 +0.0
316,298 + MPMX19_05604 0.85 +0.0
316,298 + MPMX19_05604 0.85 -0.8
316,298 + MPMX19_05604 0.85 -0.1
316,298 + MPMX19_05604 0.85 +1.0
316,298 + MPMX19_05604 0.85 -1.5
316,298 + MPMX19_05604 0.85 +0.6
316,298 + MPMX19_05604 0.85 -1.6
316,298 + MPMX19_05604 0.85 -0.2
316,299 - MPMX19_05604 0.85 +0.6
316,299 - MPMX19_05604 0.85 -0.5
316,299 - MPMX19_05604 0.85 -0.2
316,299 - MPMX19_05604 0.85 -1.7
316,299 - MPMX19_05604 0.85 +0.0
316,299 - MPMX19_05604 0.85 -0.4
316,299 - MPMX19_05604 0.85 +0.7
316,299 - MPMX19_05604 0.85 -0.6
316,299 - MPMX19_05604 0.85 +0.4
316,299 - MPMX19_05604 0.85 -1.0
316,299 - MPMX19_05604 0.85 -0.4
316,299 - MPMX19_05604 0.85 +0.9
316,299 - MPMX19_05604 0.85 +0.1
316,299 - MPMX19_05604 0.85 -0.1
316,299 - MPMX19_05604 0.85 +0.5
316,299 - MPMX19_05604 0.85 +0.6
316,299 - MPMX19_05604 0.85 -1.6
316,299 - MPMX19_05604 0.85 +0.2
316,299 - MPMX19_05604 0.85 -0.0
316,388 + +1.0
316,388 + -0.2
316,388 + -0.1
316,388 + -0.1
316,389 - +0.3
316,389 - -0.5
316,415 + -1.2
316,415 + +1.1
316,415 + -0.3
316,415 + +0.8
316,415 + -1.0
316,415 + -0.0
316,415 + +1.2
316,415 + -1.2
316,415 + -0.9
316,415 + -0.3
316,415 + -1.5
316,416 - -1.7
316,416 - +1.0
316,416 - +0.6
316,416 - -0.4
316,416 - -1.4
316,416 - +0.0
316,416 - +0.5
316,428 - -0.1
316,428 - +0.7
316,537 + +0.3
316,537 + -0.3
316,537 + -0.7
316,538 - -0.5
316,821 + MPMX19_05605 0.81 -1.5
316,821 + MPMX19_05605 0.81 -0.8
316,822 - MPMX19_05605 0.81 -2.0
316,822 - MPMX19_05605 0.81 -1.0
316,822 - MPMX19_05605 0.81 -0.3
317,051 + -1.0
317,051 + +0.0
317,051 + +0.0
317,051 + -0.3
317,051 + +1.1
317,051 + +1.6
317,052 - +0.6
317,052 - +1.6
317,052 - -0.3
317,052 - +0.5
317,052 - +0.4
317,090 + -0.6
317,090 + -0.1
317,090 + -0.8
317,090 + -0.4
317,090 + +0.0
317,207 + MPMX19_05606 0.39 -0.1
317,207 + MPMX19_05606 0.39 -0.5
317,207 + MPMX19_05606 0.39 -0.5
317,207 + MPMX19_05606 0.39 -0.5
317,563 + +0.4
317,564 - +0.5
317,564 - +0.0

Or see this region's nucleotide sequence