Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04841 and MPMX19_04842 are separated by 202 nucleotides MPMX19_04842 and MPMX19_04843 are separated by 207 nucleotides MPMX19_04843 and MPMX19_04844 are separated by 312 nucleotides
MPMX19_04841: MPMX19_04841 - Aconitate hydratase B, at 249,552 to 252,143
_04841
MPMX19_04842: MPMX19_04842 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 252,346 to 252,873
_04842
MPMX19_04843: MPMX19_04843 - hypothetical protein, at 253,081 to 253,455
_04843
MPMX19_04844: MPMX19_04844 - HTH-type transcriptional regulator HexR, at 253,768 to 254,676
_04844
Position (kb) 252
253 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.159 kb on - strand at 252.222 kb on - strand at 252.224 kb on - strand at 252.224 kb on - strand at 252.233 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.307 kb on - strand at 252.309 kb on + strand at 252.322 kb on + strand at 252.322 kb on + strand at 252.347 kb on + strand at 252.348 kb on - strand at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.902 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.050 kb on + strand at 253.297 kb on + strand, within MPMX19_04843 at 253.297 kb on + strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.318 kb on + strand, within MPMX19_04843 at 253.318 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.453 kb on + strand at 253.454 kb on - strand at 253.689 kb on + strand at 253.690 kb on - strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 252,159 - -0.8 252,222 - -1.3 252,224 - +1.0 252,224 - -1.3 252,233 - -0.6 252,263 - -0.1 252,263 - -0.9 252,263 - +0.2 252,263 - +0.6 252,307 - -1.8 252,309 + -0.1 252,322 + -0.0 252,322 + +0.7 252,347 + -0.8 252,348 - -0.2 252,785 + MPMX19_04842 0.83 -0.5 252,785 + MPMX19_04842 0.83 -1.4 252,785 + MPMX19_04842 0.83 -0.1 252,785 + MPMX19_04842 0.83 -0.7 252,786 - MPMX19_04842 0.83 -0.4 252,786 - MPMX19_04842 0.83 -1.6 252,786 - MPMX19_04842 0.83 +0.2 252,902 + -0.4 253,041 + -0.0 253,041 + +0.1 253,041 + +0.8 253,041 + -0.3 253,041 + +1.2 253,041 + -0.3 253,041 + +0.3 253,041 + -1.5 253,042 - +0.1 253,042 - +0.0 253,042 - -0.6 253,042 - -0.3 253,042 - -0.8 253,042 - +1.3 253,042 - +0.3 253,050 + +0.4 253,297 + MPMX19_04843 0.58 -1.9 253,297 + MPMX19_04843 0.58 +0.2 253,298 - MPMX19_04843 0.58 -0.8 253,298 - MPMX19_04843 0.58 -0.5 253,298 - MPMX19_04843 0.58 -0.4 253,298 - MPMX19_04843 0.58 -1.0 253,306 + MPMX19_04843 0.60 -0.4 253,306 + MPMX19_04843 0.60 -0.2 253,306 + MPMX19_04843 0.60 -0.2 253,306 + MPMX19_04843 0.60 +0.2 253,306 + MPMX19_04843 0.60 -0.9 253,307 - MPMX19_04843 0.60 -0.6 253,307 - MPMX19_04843 0.60 +0.6 253,307 - MPMX19_04843 0.60 -0.1 253,307 - MPMX19_04843 0.60 -1.0 253,307 - MPMX19_04843 0.60 -1.0 253,318 + MPMX19_04843 0.63 -0.3 253,318 + MPMX19_04843 0.63 -1.2 253,354 + MPMX19_04843 0.73 -0.8 253,354 + MPMX19_04843 0.73 -0.4 253,354 + MPMX19_04843 0.73 -0.0 253,354 + MPMX19_04843 0.73 +0.2 253,354 + MPMX19_04843 0.73 +0.3 253,354 + MPMX19_04843 0.73 +1.8 253,355 - MPMX19_04843 0.73 +0.2 253,355 - MPMX19_04843 0.73 -1.8 253,355 - MPMX19_04843 0.73 +0.1 253,355 - MPMX19_04843 0.73 +0.2 253,355 - MPMX19_04843 0.73 -0.6 253,355 - MPMX19_04843 0.73 +0.6 253,355 - MPMX19_04843 0.73 -1.6 253,355 - MPMX19_04843 0.73 +0.4 253,355 - MPMX19_04843 0.73 -0.9 253,420 + -0.4 253,420 + -0.1 253,420 + -0.2 253,420 + -1.8 253,420 + -1.2 253,420 + -1.9 253,420 + +0.5 253,421 - -2.0 253,421 - -0.2 253,421 - -1.1 253,421 - -1.2 253,421 - +0.7 253,421 - +0.6 253,453 + +0.8 253,454 - -1.3 253,689 + -1.1 253,690 - -1.8 253,769 + -0.2 253,769 + +0.7 253,769 + -1.0 253,769 + +0.7 253,769 + -0.0 253,769 + -0.9 253,769 + +0.2 253,769 + -0.9 253,769 + +0.4 253,769 + +0.4 253,769 + -1.5 253,769 + +0.3 253,769 + +0.1 253,770 - -0.0 253,770 - -0.2 253,770 - +1.0 253,770 - -0.4 253,770 - +0.4 253,770 - -1.0 253,770 - -1.2 253,770 - +1.7 253,770 - -0.5 253,770 - -0.2 253,770 - -0.0 253,773 + +2.1 253,773 + -0.9 253,773 + -0.5 253,773 + -1.8 253,773 + +1.0 253,773 + +0.4 253,774 - -0.6
Or see this region's nucleotide sequence