Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04454 and MPMX19_04455 are separated by 433 nucleotides MPMX19_04455 and MPMX19_04456 are separated by 99 nucleotides MPMX19_04456 and MPMX19_04457 are separated by 61 nucleotides
MPMX19_04454: MPMX19_04454 - hypothetical protein, at 821,622 to 821,837
_04454
MPMX19_04455: MPMX19_04455 - Arabinose 5-phosphate isomerase KdsD, at 822,271 to 822,726
_04455
MPMX19_04456: MPMX19_04456 - Histone deacetylase-like amidohydrolase, at 822,826 to 823,755
_04456
MPMX19_04457: MPMX19_04457 - Pyruvate, phosphate dikinase, at 823,817 to 825,532
_04457
Position (kb) 822
823
824 Strain fitness (log2 ratio) -2
-1
0
1
2 at 822.045 kb on + strand at 822.045 kb on + strand at 822.045 kb on + strand at 822.046 kb on - strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.747 kb on + strand at 822.748 kb on - strand at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.051 kb on + strand, within MPMX19_04456 at 823.051 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.394 kb on - strand, within MPMX19_04456 at 823.462 kb on + strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.693 kb on + strand at 823.693 kb on + strand at 823.734 kb on + strand at 823.734 kb on + strand at 823.734 kb on + strand at 823.734 kb on + strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.753 kb on + strand at 823.754 kb on - strand at 824.455 kb on + strand, within MPMX19_04457 at 824.455 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 822,045 + +0.6 822,045 + -1.1 822,045 + +1.3 822,046 - +0.5 822,088 + +0.4 822,088 + -0.6 822,088 + -0.7 822,088 + -0.4 822,088 + +0.3 822,089 - -1.5 822,089 - -0.5 822,089 - +0.6 822,089 - -0.3 822,089 - -0.5 822,715 + +0.6 822,715 + -0.7 822,715 + -1.7 822,715 + +0.0 822,715 + -0.7 822,715 + -1.3 822,715 + +0.1 822,715 + -1.3 822,715 + +0.8 822,715 + -1.8 822,715 + -1.0 822,715 + -0.7 822,715 + -0.3 822,716 - -0.4 822,716 - +0.3 822,716 - -1.4 822,716 - -2.2 822,716 - +1.9 822,716 - -0.0 822,716 - -0.7 822,716 - +0.6 822,716 - -0.1 822,716 - -0.9 822,716 - +0.7 822,716 - -0.6 822,716 - -0.5 822,716 - -1.5 822,747 + -0.3 822,748 - -0.3 823,012 + MPMX19_04456 0.20 +1.2 823,012 + MPMX19_04456 0.20 -0.7 823,012 + MPMX19_04456 0.20 +0.2 823,012 + MPMX19_04456 0.20 -0.4 823,012 + MPMX19_04456 0.20 +0.0 823,012 + MPMX19_04456 0.20 +0.4 823,012 + MPMX19_04456 0.20 -0.9 823,012 + MPMX19_04456 0.20 -0.5 823,012 + MPMX19_04456 0.20 -0.4 823,012 + MPMX19_04456 0.20 -1.5 823,013 - MPMX19_04456 0.20 -1.3 823,013 - MPMX19_04456 0.20 +1.0 823,013 - MPMX19_04456 0.20 +0.2 823,013 - MPMX19_04456 0.20 +0.9 823,013 - MPMX19_04456 0.20 -0.3 823,013 - MPMX19_04456 0.20 -0.2 823,013 - MPMX19_04456 0.20 -1.5 823,013 - MPMX19_04456 0.20 -0.9 823,013 - MPMX19_04456 0.20 -0.2 823,013 - MPMX19_04456 0.20 -0.7 823,013 - MPMX19_04456 0.20 -1.1 823,013 - MPMX19_04456 0.20 -0.0 823,051 + MPMX19_04456 0.24 -0.4 823,051 + MPMX19_04456 0.24 +1.9 823,393 + MPMX19_04456 0.61 -1.0 823,393 + MPMX19_04456 0.61 -1.2 823,393 + MPMX19_04456 0.61 -1.5 823,394 - MPMX19_04456 0.61 -1.3 823,462 + MPMX19_04456 0.68 -0.6 823,463 - MPMX19_04456 0.68 -1.4 823,463 - MPMX19_04456 0.68 -0.1 823,463 - MPMX19_04456 0.68 -0.5 823,463 - MPMX19_04456 0.68 -0.9 823,463 - MPMX19_04456 0.68 +0.9 823,463 - MPMX19_04456 0.68 +0.3 823,693 + -0.3 823,693 + +0.8 823,734 + -0.2 823,734 + +1.6 823,734 + +0.2 823,734 + -1.0 823,735 - -0.0 823,735 - +0.4 823,735 - +0.8 823,735 - +0.1 823,735 - -0.5 823,735 - -0.2 823,735 - -1.0 823,753 + +0.5 823,754 - -2.5 824,455 + MPMX19_04457 0.37 +0.2 824,455 + MPMX19_04457 0.37 +0.2 824,523 + MPMX19_04457 0.41 -1.3 824,523 + MPMX19_04457 0.41 -0.9 824,523 + MPMX19_04457 0.41 +0.3 824,523 + MPMX19_04457 0.41 +0.2 824,524 - MPMX19_04457 0.41 +0.2 824,524 - MPMX19_04457 0.41 -0.5 824,524 - MPMX19_04457 0.41 -2.4 824,524 - MPMX19_04457 0.41 -0.1 824,524 - MPMX19_04457 0.41 -0.8
Or see this region's nucleotide sequence