Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04057

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04056 and MPMX19_04057 overlap by 4 nucleotidesMPMX19_04057 and MPMX19_04058 overlap by 4 nucleotidesMPMX19_04058 and MPMX19_04059 are separated by 164 nucleotides MPMX19_04056: MPMX19_04056 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 359,845 to 362,130 _04056 MPMX19_04057: MPMX19_04057 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 362,127 to 363,116 _04057 MPMX19_04058: MPMX19_04058 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 363,113 to 363,673 _04058 MPMX19_04059: MPMX19_04059 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 363,838 to 364,947 _04059 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2at 361.349 kb on + strand, within MPMX19_04056at 361.349 kb on + strand, within MPMX19_04056at 361.349 kb on + strand, within MPMX19_04056at 361.349 kb on + strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.520 kb on + strand, within MPMX19_04056at 361.520 kb on + strand, within MPMX19_04056at 361.521 kb on - strand, within MPMX19_04056at 361.667 kb on + strand, within MPMX19_04056at 361.668 kb on - strand, within MPMX19_04056at 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.964 kb on + strandat 361.964 kb on + strandat 361.964 kb on + strandat 361.965 kb on - strandat 361.965 kb on - strandat 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.437 kb on + strand, within MPMX19_04057at 362.437 kb on + strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.552 kb on + strand, within MPMX19_04057at 362.553 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.759 kb on - strand, within MPMX19_04057at 362.857 kb on + strand, within MPMX19_04057at 362.857 kb on + strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.204 kb on + strand, within MPMX19_04058at 363.204 kb on + strand, within MPMX19_04058at 363.204 kb on + strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.366 kb on + strand, within MPMX19_04058at 363.468 kb on + strand, within MPMX19_04058at 363.468 kb on + strand, within MPMX19_04058at 363.469 kb on - strand, within MPMX19_04058at 363.818 kb on - strandat 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.068 kb on - strand, within MPMX19_04059at 364.068 kb on - strand, within MPMX19_04059at 364.068 kb on - strand, within MPMX19_04059

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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361,349 + MPMX19_04056 0.66 +0.4
361,349 + MPMX19_04056 0.66 -0.0
361,349 + MPMX19_04056 0.66 -0.0
361,349 + MPMX19_04056 0.66 -0.7
361,350 - MPMX19_04056 0.66 -0.6
361,350 - MPMX19_04056 0.66 -0.4
361,350 - MPMX19_04056 0.66 -1.2
361,350 - MPMX19_04056 0.66 +1.0
361,520 + MPMX19_04056 0.73 +0.1
361,520 + MPMX19_04056 0.73 -0.4
361,521 - MPMX19_04056 0.73 +0.4
361,667 + MPMX19_04056 0.80 -0.4
361,668 - MPMX19_04056 0.80 +0.3
361,949 + -0.0
361,949 + +0.8
361,949 + -0.8
361,949 + -0.5
361,949 + -0.5
361,949 + -0.6
361,950 - +0.3
361,950 - -0.1
361,950 - +0.2
361,950 - -0.7
361,950 - +0.6
361,964 + +0.8
361,964 + -0.1
361,964 + -1.1
361,965 - +1.1
361,965 - +2.2
362,410 + MPMX19_04057 0.29 +1.1
362,410 + MPMX19_04057 0.29 -2.1
362,410 + MPMX19_04057 0.29 -0.8
362,410 + MPMX19_04057 0.29 -0.1
362,410 + MPMX19_04057 0.29 -1.0
362,410 + MPMX19_04057 0.29 -0.6
362,410 + MPMX19_04057 0.29 -2.0
362,410 + MPMX19_04057 0.29 -1.4
362,410 + MPMX19_04057 0.29 +0.6
362,410 + MPMX19_04057 0.29 -0.7
362,411 - MPMX19_04057 0.29 +1.6
362,411 - MPMX19_04057 0.29 -0.4
362,411 - MPMX19_04057 0.29 +0.6
362,411 - MPMX19_04057 0.29 -1.0
362,411 - MPMX19_04057 0.29 +2.1
362,411 - MPMX19_04057 0.29 -0.9
362,411 - MPMX19_04057 0.29 -0.8
362,437 + MPMX19_04057 0.31 -2.2
362,437 + MPMX19_04057 0.31 +0.6
362,438 - MPMX19_04057 0.31 +0.2
362,438 - MPMX19_04057 0.31 -0.1
362,438 - MPMX19_04057 0.31 -0.4
362,438 - MPMX19_04057 0.31 -0.2
362,552 + MPMX19_04057 0.43 -0.8
362,553 - MPMX19_04057 0.43 -0.8
362,681 - MPMX19_04057 0.56 -0.4
362,681 - MPMX19_04057 0.56 +0.2
362,681 - MPMX19_04057 0.56 -0.7
362,758 + MPMX19_04057 0.64 -0.3
362,758 + MPMX19_04057 0.64 -1.0
362,758 + MPMX19_04057 0.64 -0.4
362,758 + MPMX19_04057 0.64 +0.4
362,759 - MPMX19_04057 0.64 -0.5
362,857 + MPMX19_04057 0.74 -0.3
362,857 + MPMX19_04057 0.74 -2.6
362,858 - MPMX19_04057 0.74 -0.4
362,858 - MPMX19_04057 0.74 -1.0
362,858 - MPMX19_04057 0.74 -0.0
362,858 - MPMX19_04057 0.74 -0.2
363,037 + -1.1
363,037 + +1.6
363,037 + -0.0
363,037 + -0.4
363,037 + +0.6
363,038 - -1.3
363,038 - -0.3
363,038 - -1.2
363,038 - -1.1
363,100 + -0.4
363,100 + +2.0
363,100 + -1.7
363,100 + -1.2
363,100 + -1.1
363,100 + +0.1
363,100 + +0.1
363,100 + +0.2
363,100 + -1.9
363,101 - +0.6
363,101 - -0.3
363,101 - +0.5
363,101 - -0.2
363,101 - +0.4
363,101 - -1.3
363,204 + MPMX19_04058 0.16 -1.3
363,204 + MPMX19_04058 0.16 +2.0
363,204 + MPMX19_04058 0.16 +0.2
363,205 - MPMX19_04058 0.16 -0.1
363,205 - MPMX19_04058 0.16 -0.2
363,205 - MPMX19_04058 0.16 +2.3
363,205 - MPMX19_04058 0.16 -0.8
363,205 - MPMX19_04058 0.16 +0.3
363,366 + MPMX19_04058 0.45 +0.6
363,468 + MPMX19_04058 0.63 +0.1
363,468 + MPMX19_04058 0.63 -1.8
363,469 - MPMX19_04058 0.63 +0.6
363,818 - -1.0
363,974 + MPMX19_04059 0.12 -0.8
363,974 + MPMX19_04059 0.12 +0.2
363,974 + MPMX19_04059 0.12 +0.4
363,974 + MPMX19_04059 0.12 +0.6
363,974 + MPMX19_04059 0.12 -0.7
363,974 + MPMX19_04059 0.12 -0.2
363,974 + MPMX19_04059 0.12 -0.5
363,974 + MPMX19_04059 0.12 +0.4
363,974 + MPMX19_04059 0.12 -0.6
363,974 + MPMX19_04059 0.12 -0.5
363,974 + MPMX19_04059 0.12 -1.5
363,974 + MPMX19_04059 0.12 +0.1
363,974 + MPMX19_04059 0.12 -0.2
363,975 - MPMX19_04059 0.12 -0.8
363,975 - MPMX19_04059 0.12 +0.2
363,975 - MPMX19_04059 0.12 +0.7
363,975 - MPMX19_04059 0.12 +0.1
363,975 - MPMX19_04059 0.12 +0.1
363,975 - MPMX19_04059 0.12 -0.3
363,975 - MPMX19_04059 0.12 -0.0
363,975 - MPMX19_04059 0.12 -0.0
363,975 - MPMX19_04059 0.12 -1.1
363,975 - MPMX19_04059 0.12 +1.4
363,975 - MPMX19_04059 0.12 -0.3
363,975 - MPMX19_04059 0.12 -0.8
363,975 - MPMX19_04059 0.12 -0.7
363,975 - MPMX19_04059 0.12 -0.2
363,975 - MPMX19_04059 0.12 +0.2
363,975 - MPMX19_04059 0.12 -1.2
363,975 - MPMX19_04059 0.12 -0.8
363,975 - MPMX19_04059 0.12 -0.2
363,975 - MPMX19_04059 0.12 -1.3
364,067 + MPMX19_04059 0.21 +0.3
364,067 + MPMX19_04059 0.21 +0.8
364,067 + MPMX19_04059 0.21 -1.6
364,067 + MPMX19_04059 0.21 -0.4
364,067 + MPMX19_04059 0.21 -0.2
364,067 + MPMX19_04059 0.21 +0.8
364,067 + MPMX19_04059 0.21 -1.0
364,068 - MPMX19_04059 0.21 +0.3
364,068 - MPMX19_04059 0.21 +0.6
364,068 - MPMX19_04059 0.21 -0.5

Or see this region's nucleotide sequence