Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03787

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03783 and MPMX19_03784 overlap by 4 nucleotidesMPMX19_03784 and MPMX19_03785 overlap by 4 nucleotidesMPMX19_03785 and MPMX19_03786 overlap by 1 nucleotidesMPMX19_03786 and MPMX19_03787 overlap by 4 nucleotidesMPMX19_03787 and MPMX19_03788 are separated by 2 nucleotidesMPMX19_03788 and MPMX19_03789 are separated by 52 nucleotides MPMX19_03783: MPMX19_03783 - hypothetical protein, at 23,135 to 23,893 _03783 MPMX19_03784: MPMX19_03784 - hypothetical protein, at 23,890 to 24,132 _03784 MPMX19_03785: MPMX19_03785 - hypothetical protein, at 24,129 to 24,392 _03785 MPMX19_03786: MPMX19_03786 - hypothetical protein, at 24,392 to 24,667 _03786 MPMX19_03787: MPMX19_03787 - hypothetical protein, at 24,664 to 25,137 _03787 MPMX19_03788: MPMX19_03788 - hypothetical protein, at 25,140 to 25,589 _03788 MPMX19_03789: MPMX19_03789 - hypothetical protein, at 25,642 to 26,169 _03789 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2 3at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.731 kb on + strand, within MPMX19_03783at 23.744 kb on + strand, within MPMX19_03783at 23.745 kb on - strand, within MPMX19_03783at 23.745 kb on - strand, within MPMX19_03783at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.924 kb on - strand, within MPMX19_03784at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.922 kb on + strand, within MPMX19_03787at 24.923 kb on - strand, within MPMX19_03787at 24.923 kb on - strand, within MPMX19_03787at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.421 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.587 kb on + strandat 25.587 kb on + strandat 25.587 kb on + strandat 25.588 kb on - strandat 25.588 kb on - strandat 25.598 kb on + strandat 25.598 kb on + strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.687 kb on + strandat 25.687 kb on + strandat 25.687 kb on + strandat 25.687 kb on + strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.858 kb on + strand, within MPMX19_03789at 25.858 kb on + strand, within MPMX19_03789at 25.858 kb on + strand, within MPMX19_03789at 25.858 kb on + strand, within MPMX19_03789at 25.859 kb on - strand, within MPMX19_03789at 25.859 kb on - strand, within MPMX19_03789at 25.859 kb on - strand, within MPMX19_03789at 25.993 kb on + strand, within MPMX19_03789at 25.993 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.029 kb on - strand, within MPMX19_03789at 26.092 kb on + strand, within MPMX19_03789at 26.092 kb on + strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
23,669 + MPMX19_03783 0.70 +0.0
23,669 + MPMX19_03783 0.70 +0.1
23,669 + MPMX19_03783 0.70 -1.6
23,669 + MPMX19_03783 0.70 +0.1
23,669 + MPMX19_03783 0.70 -0.6
23,669 + MPMX19_03783 0.70 -0.4
23,669 + MPMX19_03783 0.70 -0.8
23,669 + MPMX19_03783 0.70 -0.6
23,669 + MPMX19_03783 0.70 -0.6
23,670 - MPMX19_03783 0.70 -2.7
23,670 - MPMX19_03783 0.70 -0.1
23,670 - MPMX19_03783 0.70 +0.3
23,670 - MPMX19_03783 0.70 -1.1
23,670 - MPMX19_03783 0.70 -1.0
23,684 + MPMX19_03783 0.72 -0.5
23,684 + MPMX19_03783 0.72 -0.3
23,684 + MPMX19_03783 0.72 -0.3
23,684 + MPMX19_03783 0.72 +0.3
23,684 + MPMX19_03783 0.72 -0.4
23,684 + MPMX19_03783 0.72 -2.1
23,684 + MPMX19_03783 0.72 -0.4
23,684 + MPMX19_03783 0.72 -0.9
23,684 + MPMX19_03783 0.72 -0.2
23,685 - MPMX19_03783 0.72 -0.2
23,685 - MPMX19_03783 0.72 -1.4
23,685 - MPMX19_03783 0.72 +0.2
23,685 - MPMX19_03783 0.72 -2.5
23,685 - MPMX19_03783 0.72 -0.7
23,685 - MPMX19_03783 0.72 +1.2
23,685 - MPMX19_03783 0.72 -1.3
23,685 - MPMX19_03783 0.72 +0.0
23,685 - MPMX19_03783 0.72 -0.6
23,731 + MPMX19_03783 0.79 +0.3
23,744 + MPMX19_03783 0.80 -0.2
23,745 - MPMX19_03783 0.80 -1.4
23,745 - MPMX19_03783 0.80 -2.3
23,923 + MPMX19_03784 0.14 -0.1
23,923 + MPMX19_03784 0.14 +0.3
23,923 + MPMX19_03784 0.14 -1.6
23,923 + MPMX19_03784 0.14 +0.0
23,923 + MPMX19_03784 0.14 -0.1
23,924 - MPMX19_03784 0.14 -2.1
24,584 + MPMX19_03786 0.70 -1.0
24,584 + MPMX19_03786 0.70 +0.8
24,584 + MPMX19_03786 0.70 +0.0
24,584 + MPMX19_03786 0.70 +0.0
24,584 + MPMX19_03786 0.70 +0.2
24,585 - MPMX19_03786 0.70 -0.8
24,585 - MPMX19_03786 0.70 +0.0
24,585 - MPMX19_03786 0.70 -0.3
24,585 - MPMX19_03786 0.70 +0.9
24,585 - MPMX19_03786 0.70 +0.0
24,585 - MPMX19_03786 0.70 -0.6
24,585 - MPMX19_03786 0.70 -0.8
24,585 - MPMX19_03786 0.70 +0.0
24,922 + MPMX19_03787 0.54 -0.6
24,923 - MPMX19_03787 0.55 -0.3
24,923 - MPMX19_03787 0.55 -2.2
25,385 + MPMX19_03788 0.54 +1.0
25,385 + MPMX19_03788 0.54 -1.0
25,385 + MPMX19_03788 0.54 -0.1
25,385 + MPMX19_03788 0.54 -0.8
25,386 - MPMX19_03788 0.55 -1.8
25,386 - MPMX19_03788 0.55 -1.1
25,386 - MPMX19_03788 0.55 -0.8
25,421 + MPMX19_03788 0.62 -1.6
25,461 + MPMX19_03788 0.71 -0.7
25,461 + MPMX19_03788 0.71 -0.4
25,461 + MPMX19_03788 0.71 -0.7
25,461 + MPMX19_03788 0.71 -1.8
25,462 - MPMX19_03788 0.72 +0.9
25,462 - MPMX19_03788 0.72 +0.4
25,462 - MPMX19_03788 0.72 +0.1
25,462 - MPMX19_03788 0.72 -2.3
25,462 - MPMX19_03788 0.72 +0.7
25,462 - MPMX19_03788 0.72 -1.0
25,462 - MPMX19_03788 0.72 -0.7
25,462 - MPMX19_03788 0.72 -0.8
25,587 + -0.9
25,587 + -0.6
25,587 + +0.6
25,588 - +0.5
25,588 - -0.5
25,598 + -0.4
25,598 + -1.6
25,599 - -0.3
25,599 - +0.2
25,599 - -0.1
25,599 - -2.2
25,687 + +0.0
25,687 + +1.4
25,687 + -2.3
25,687 + +0.9
25,688 - -1.1
25,688 - +0.4
25,688 - +0.2
25,688 - +0.3
25,688 - +0.1
25,688 - -0.1
25,688 - +0.6
25,858 + MPMX19_03789 0.41 +1.1
25,858 + MPMX19_03789 0.41 +0.4
25,858 + MPMX19_03789 0.41 +0.7
25,858 + MPMX19_03789 0.41 +0.5
25,859 - MPMX19_03789 0.41 +0.2
25,859 - MPMX19_03789 0.41 -1.3
25,859 - MPMX19_03789 0.41 -0.6
25,993 + MPMX19_03789 0.66 +0.6
25,993 + MPMX19_03789 0.66 +0.3
26,023 + MPMX19_03789 0.72 +0.5
26,023 + MPMX19_03789 0.72 +0.3
26,023 + MPMX19_03789 0.72 +0.4
26,023 + MPMX19_03789 0.72 -0.8
26,023 + MPMX19_03789 0.72 -0.4
26,023 + MPMX19_03789 0.72 -2.3
26,024 - MPMX19_03789 0.72 +1.0
26,024 - MPMX19_03789 0.72 -0.4
26,024 - MPMX19_03789 0.72 -1.4
26,024 - MPMX19_03789 0.72 +0.2
26,024 - MPMX19_03789 0.72 +0.1
26,024 - MPMX19_03789 0.72 -1.2
26,024 - MPMX19_03789 0.72 -0.5
26,024 - MPMX19_03789 0.72 -0.7
26,024 - MPMX19_03789 0.72 -1.0
26,024 - MPMX19_03789 0.72 -0.4
26,029 - MPMX19_03789 0.73 +0.2
26,092 + MPMX19_03789 0.85 +0.0
26,092 + MPMX19_03789 0.85 -0.2
26,093 - MPMX19_03789 0.85 +2.3
26,093 - MPMX19_03789 0.85 +0.9
26,093 - MPMX19_03789 0.85 -1.6
26,093 - MPMX19_03789 0.85 +0.3
26,093 - MPMX19_03789 0.85 -2.6
26,093 - MPMX19_03789 0.85 +3.7
26,093 - MPMX19_03789 0.85 +0.4
26,093 - MPMX19_03789 0.85 -0.4

Or see this region's nucleotide sequence