Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03447 and MPMX19_03448 are separated by 26 nucleotides MPMX19_03448 and MPMX19_03449 are separated by 211 nucleotides
MPMX19_03447: MPMX19_03447 - hypothetical protein, at 843,349 to 844,590
_03447
MPMX19_03448: MPMX19_03448 - hypothetical protein, at 844,617 to 845,423
_03448
MPMX19_03449: MPMX19_03449 - hypothetical protein, at 845,635 to 846,339
_03449
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.925 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.499 kb on - strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.633 kb on - strand at 844.633 kb on - strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.689 kb on - strand at 844.689 kb on - strand at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.905 kb on + strand, within MPMX19_03448 at 844.950 kb on + strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.170 kb on - strand, within MPMX19_03448 at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.535 kb on - strand at 845.535 kb on - strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.585 kb on - strand at 845.585 kb on - strand at 845.782 kb on + strand, within MPMX19_03449 at 845.783 kb on - strand, within MPMX19_03449 at 845.818 kb on + strand, within MPMX19_03449 at 845.819 kb on - strand, within MPMX19_03449 at 845.819 kb on - strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.908 kb on + strand, within MPMX19_03449 at 845.909 kb on - strand, within MPMX19_03449 at 845.909 kb on - strand, within MPMX19_03449 at 846.029 kb on - strand, within MPMX19_03449 at 846.034 kb on + strand, within MPMX19_03449 at 846.035 kb on - strand, within MPMX19_03449 at 846.067 kb on + strand, within MPMX19_03449 at 846.067 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.155 kb on - strand, within MPMX19_03449 at 846.155 kb on - strand, within MPMX19_03449 at 846.337 kb on + strand at 846.338 kb on - strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.375 kb on - strand at 846.375 kb on - strand at 846.423 kb on + strand at 846.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 843,673 + MPMX19_03447 0.26 +0.0 843,673 + MPMX19_03447 0.26 +0.8 843,673 + MPMX19_03447 0.26 -0.5 843,673 + MPMX19_03447 0.26 -0.5 843,673 + MPMX19_03447 0.26 -0.9 843,673 + MPMX19_03447 0.26 -0.6 843,673 + MPMX19_03447 0.26 -0.9 843,673 + MPMX19_03447 0.26 -0.8 843,673 + MPMX19_03447 0.26 +0.4 843,673 + MPMX19_03447 0.26 +0.5 843,674 - MPMX19_03447 0.26 +0.3 843,674 - MPMX19_03447 0.26 +0.5 843,674 - MPMX19_03447 0.26 -0.1 843,674 - MPMX19_03447 0.26 -0.5 843,674 - MPMX19_03447 0.26 -2.4 843,674 - MPMX19_03447 0.26 +0.2 843,674 - MPMX19_03447 0.26 +0.0 843,674 - MPMX19_03447 0.26 +0.5 843,674 - MPMX19_03447 0.26 +0.9 843,674 - MPMX19_03447 0.26 -0.9 843,674 - MPMX19_03447 0.26 -1.4 843,823 + MPMX19_03447 0.38 -0.1 843,823 + MPMX19_03447 0.38 +1.5 843,823 + MPMX19_03447 0.38 -0.3 843,823 + MPMX19_03447 0.38 -0.6 843,823 + MPMX19_03447 0.38 -0.6 843,823 + MPMX19_03447 0.38 -0.9 843,824 - MPMX19_03447 0.38 +0.8 843,824 - MPMX19_03447 0.38 -0.9 843,824 - MPMX19_03447 0.38 +0.4 843,824 - MPMX19_03447 0.38 -1.5 843,824 - MPMX19_03447 0.38 +0.2 843,925 + MPMX19_03447 0.46 -1.1 843,943 + MPMX19_03447 0.48 -0.3 843,943 + MPMX19_03447 0.48 +1.4 843,943 + MPMX19_03447 0.48 +0.1 843,943 + MPMX19_03447 0.48 -0.8 843,943 + MPMX19_03447 0.48 -0.8 843,943 + MPMX19_03447 0.48 +0.7 843,943 + MPMX19_03447 0.48 -0.6 843,943 + MPMX19_03447 0.48 -0.8 843,943 + MPMX19_03447 0.48 -1.4 843,943 + MPMX19_03447 0.48 -1.7 843,943 + MPMX19_03447 0.48 -1.2 843,944 - MPMX19_03447 0.48 +0.2 843,944 - MPMX19_03447 0.48 -0.5 843,944 - MPMX19_03447 0.48 -1.5 843,944 - MPMX19_03447 0.48 -0.8 843,944 - MPMX19_03447 0.48 -2.2 843,944 - MPMX19_03447 0.48 -0.3 843,944 - MPMX19_03447 0.48 -1.3 843,944 - MPMX19_03447 0.48 +0.1 843,944 - MPMX19_03447 0.48 -0.7 843,944 - MPMX19_03447 0.48 +1.5 843,944 - MPMX19_03447 0.48 -0.3 843,979 + MPMX19_03447 0.51 -0.2 843,979 + MPMX19_03447 0.51 +0.5 843,979 + MPMX19_03447 0.51 +0.8 843,979 + MPMX19_03447 0.51 -0.1 843,979 + MPMX19_03447 0.51 +0.1 843,980 - MPMX19_03447 0.51 -1.9 843,980 - MPMX19_03447 0.51 -0.1 844,037 - MPMX19_03447 0.55 -0.4 844,037 - MPMX19_03447 0.55 -0.6 844,037 - MPMX19_03447 0.55 +0.9 844,042 + MPMX19_03447 0.56 +0.3 844,042 + MPMX19_03447 0.56 +1.2 844,042 + MPMX19_03447 0.56 -0.4 844,043 - MPMX19_03447 0.56 -0.6 844,043 - MPMX19_03447 0.56 +2.3 844,043 - MPMX19_03447 0.56 -1.5 844,043 - MPMX19_03447 0.56 -0.9 844,043 - MPMX19_03447 0.56 +0.2 844,043 - MPMX19_03447 0.56 -1.2 844,043 - MPMX19_03447 0.56 -0.5 844,043 - MPMX19_03447 0.56 +0.3 844,043 - MPMX19_03447 0.56 +0.9 844,043 - MPMX19_03447 0.56 +1.5 844,045 + MPMX19_03447 0.56 -0.2 844,045 + MPMX19_03447 0.56 -0.8 844,045 + MPMX19_03447 0.56 -0.1 844,046 - MPMX19_03447 0.56 -0.5 844,046 - MPMX19_03447 0.56 -0.5 844,093 + MPMX19_03447 0.60 +0.3 844,093 + MPMX19_03447 0.60 -0.7 844,093 + MPMX19_03447 0.60 +0.3 844,093 + MPMX19_03447 0.60 +0.2 844,093 + MPMX19_03447 0.60 -1.8 844,093 + MPMX19_03447 0.60 -1.5 844,094 - MPMX19_03447 0.60 +1.3 844,094 - MPMX19_03447 0.60 -0.3 844,094 - MPMX19_03447 0.60 +0.5 844,229 + MPMX19_03447 0.71 -1.7 844,229 + MPMX19_03447 0.71 -0.1 844,229 + MPMX19_03447 0.71 -0.1 844,230 - MPMX19_03447 0.71 +0.0 844,230 - MPMX19_03447 0.71 -1.5 844,230 - MPMX19_03447 0.71 -2.5 844,230 - MPMX19_03447 0.71 -1.1 844,230 - MPMX19_03447 0.71 +1.1 844,316 - MPMX19_03447 0.78 -0.1 844,316 - MPMX19_03447 0.78 +0.2 844,345 + MPMX19_03447 0.80 -1.6 844,345 + MPMX19_03447 0.80 -0.3 844,345 + MPMX19_03447 0.80 -0.3 844,345 + MPMX19_03447 0.80 -1.3 844,345 + MPMX19_03447 0.80 -0.8 844,345 + MPMX19_03447 0.80 -0.1 844,345 + MPMX19_03447 0.80 -0.3 844,345 + MPMX19_03447 0.80 -0.9 844,346 - MPMX19_03447 0.80 +0.8 844,346 - MPMX19_03447 0.80 +0.4 844,346 - MPMX19_03447 0.80 -0.0 844,346 - MPMX19_03447 0.80 +0.1 844,346 - MPMX19_03447 0.80 +0.9 844,346 - MPMX19_03447 0.80 +0.9 844,346 - MPMX19_03447 0.80 -0.5 844,346 - MPMX19_03447 0.80 +0.4 844,499 - +0.2 844,614 + -0.1 844,614 + +0.7 844,614 + +0.2 844,614 + +0.5 844,614 + +0.3 844,615 - -0.7 844,615 - +0.5 844,615 - -0.3 844,615 - +1.1 844,615 - +0.8 844,615 - -0.9 844,615 - -0.5 844,633 - -0.7 844,633 - -0.5 844,688 + +1.2 844,688 + +0.9 844,688 + -0.1 844,688 + +0.2 844,688 + -0.1 844,689 - -0.4 844,689 - +0.2 844,878 + MPMX19_03448 0.32 -0.1 844,878 + MPMX19_03448 0.32 -1.1 844,878 + MPMX19_03448 0.32 -2.1 844,905 + MPMX19_03448 0.36 -1.8 844,950 + MPMX19_03448 0.41 +0.3 844,951 - MPMX19_03448 0.41 -1.6 844,951 - MPMX19_03448 0.41 -0.8 845,025 + MPMX19_03448 0.51 -0.5 845,025 + MPMX19_03448 0.51 -0.2 845,026 - MPMX19_03448 0.51 +1.2 845,026 - MPMX19_03448 0.51 -1.3 845,026 - MPMX19_03448 0.51 +0.0 845,026 - MPMX19_03448 0.51 +0.9 845,026 - MPMX19_03448 0.51 -1.6 845,169 + MPMX19_03448 0.68 -1.2 845,169 + MPMX19_03448 0.68 -2.3 845,169 + MPMX19_03448 0.68 -0.3 845,170 - MPMX19_03448 0.69 -0.9 845,357 + -1.2 845,357 + -0.5 845,357 + +0.0 845,357 + +0.3 845,357 + -2.2 845,357 + -0.2 845,357 + -0.3 845,357 + -0.8 845,358 - -1.3 845,358 - -0.3 845,358 - +0.9 845,358 - -0.5 845,358 - -0.1 845,534 + -0.7 845,534 + -0.1 845,534 + -0.5 845,535 - +0.3 845,535 - +0.4 845,584 + -0.8 845,584 + -2.1 845,584 + -1.6 845,584 + +0.7 845,585 - -1.0 845,585 - -1.3 845,782 + MPMX19_03449 0.21 +0.9 845,783 - MPMX19_03449 0.21 +1.0 845,818 + MPMX19_03449 0.26 +0.5 845,819 - MPMX19_03449 0.26 +0.4 845,819 - MPMX19_03449 0.26 +0.5 845,851 + MPMX19_03449 0.31 -0.1 845,851 + MPMX19_03449 0.31 -0.8 845,851 + MPMX19_03449 0.31 -0.3 845,908 + MPMX19_03449 0.39 -0.8 845,909 - MPMX19_03449 0.39 -0.2 845,909 - MPMX19_03449 0.39 +0.0 846,029 - MPMX19_03449 0.56 -1.5 846,034 + MPMX19_03449 0.57 -0.7 846,035 - MPMX19_03449 0.57 -0.5 846,067 + MPMX19_03449 0.61 -2.3 846,067 + MPMX19_03449 0.61 -0.1 846,145 + MPMX19_03449 0.72 +0.2 846,145 + MPMX19_03449 0.72 +0.9 846,145 + MPMX19_03449 0.72 -0.8 846,145 + MPMX19_03449 0.72 -2.0 846,145 + MPMX19_03449 0.72 -0.3 846,145 + MPMX19_03449 0.72 +0.6 846,146 - MPMX19_03449 0.72 -0.1 846,146 - MPMX19_03449 0.72 -1.8 846,146 - MPMX19_03449 0.72 -0.5 846,146 - MPMX19_03449 0.72 -1.8 846,146 - MPMX19_03449 0.72 -0.5 846,146 - MPMX19_03449 0.72 -0.5 846,154 + MPMX19_03449 0.74 -2.1 846,154 + MPMX19_03449 0.74 -0.8 846,154 + MPMX19_03449 0.74 -1.2 846,154 + MPMX19_03449 0.74 -0.7 846,154 + MPMX19_03449 0.74 -1.1 846,154 + MPMX19_03449 0.74 -1.9 846,154 + MPMX19_03449 0.74 +0.5 846,155 - MPMX19_03449 0.74 -0.2 846,155 - MPMX19_03449 0.74 -1.3 846,337 + +0.8 846,338 - -1.3 846,374 + +0.5 846,374 + -0.5 846,374 + -1.3 846,374 + -0.5 846,374 + +0.1 846,375 - -1.5 846,375 - +0.3 846,423 + +0.1 846,423 + -0.9
Or see this region's nucleotide sequence