Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03327 and MPMX19_03328 overlap by 50 nucleotides MPMX19_03328 and MPMX19_03329 are separated by 63 nucleotides MPMX19_03329 and MPMX19_03330 are separated by 606 nucleotides
MPMX19_03327: MPMX19_03327 - hypothetical protein, at 678,319 to 678,723
_03327
MPMX19_03328: MPMX19_03328 - hypothetical protein, at 678,674 to 679,411
_03328
MPMX19_03329: MPMX19_03329 - hypothetical protein, at 679,475 to 679,906
_03329
MPMX19_03330: MPMX19_03330 - hypothetical protein, at 680,513 to 683,845
_03330
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 678.478 kb on + strand, within MPMX19_03327 at 678.478 kb on + strand, within MPMX19_03327 at 678.479 kb on - strand, within MPMX19_03327 at 678.488 kb on - strand, within MPMX19_03327 at 678.550 kb on + strand, within MPMX19_03327 at 678.551 kb on - strand, within MPMX19_03327 at 678.559 kb on + strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.834 kb on + strand, within MPMX19_03328 at 678.834 kb on + strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.840 kb on + strand, within MPMX19_03328 at 678.840 kb on + strand, within MPMX19_03328 at 678.841 kb on - strand, within MPMX19_03328 at 678.841 kb on - strand, within MPMX19_03328 at 678.921 kb on + strand, within MPMX19_03328 at 678.921 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.003 kb on - strand, within MPMX19_03328 at 679.003 kb on - strand, within MPMX19_03328 at 679.003 kb on - strand, within MPMX19_03328 at 679.294 kb on - strand, within MPMX19_03328 at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.405 kb on + strand at 679.405 kb on + strand at 679.406 kb on - strand at 679.728 kb on + strand, within MPMX19_03329 at 679.729 kb on - strand, within MPMX19_03329 at 679.729 kb on - strand, within MPMX19_03329 at 679.831 kb on + strand, within MPMX19_03329 at 679.832 kb on - strand, within MPMX19_03329 at 679.833 kb on + strand, within MPMX19_03329 at 679.833 kb on + strand, within MPMX19_03329 at 679.833 kb on + strand, within MPMX19_03329 at 679.834 kb on - strand, within MPMX19_03329 at 679.834 kb on - strand, within MPMX19_03329 at 679.834 kb on - strand, within MPMX19_03329 at 679.938 kb on - strand at 679.938 kb on - strand at 679.938 kb on - strand at 679.959 kb on + strand at 679.960 kb on - strand at 679.960 kb on - strand at 680.039 kb on - strand at 680.065 kb on + strand at 680.065 kb on + strand at 680.065 kb on + strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.102 kb on + strand at 680.103 kb on - strand at 680.273 kb on - strand at 680.333 kb on - strand at 680.376 kb on + strand at 680.377 kb on - strand at 680.377 kb on - strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.811 kb on - strand at 680.811 kb on - strand at 680.811 kb on - strand at 680.882 kb on + strand, within MPMX19_03330 at 680.882 kb on + strand, within MPMX19_03330 at 680.882 kb on + strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 678,478 + MPMX19_03327 0.39 +1.0 678,478 + MPMX19_03327 0.39 -0.9 678,479 - MPMX19_03327 0.40 -1.4 678,488 - MPMX19_03327 0.42 +0.1 678,550 + MPMX19_03327 0.57 -0.2 678,551 - MPMX19_03327 0.57 -0.7 678,559 + MPMX19_03327 0.59 +0.1 678,560 - MPMX19_03327 0.60 -0.5 678,560 - MPMX19_03327 0.60 +0.3 678,560 - MPMX19_03327 0.60 -1.6 678,560 - MPMX19_03327 0.60 -0.2 678,560 - MPMX19_03327 0.60 +0.8 678,616 + MPMX19_03327 0.73 +0.4 678,616 + MPMX19_03327 0.73 +0.1 678,616 + MPMX19_03327 0.73 -1.0 678,616 + MPMX19_03327 0.73 +0.6 678,616 + MPMX19_03327 0.73 -0.3 678,616 + MPMX19_03327 0.73 -0.3 678,616 + MPMX19_03327 0.73 -0.2 678,616 + MPMX19_03327 0.73 +1.2 678,617 - MPMX19_03327 0.74 -0.1 678,617 - MPMX19_03327 0.74 +0.5 678,617 - MPMX19_03327 0.74 +0.5 678,617 - MPMX19_03327 0.74 +1.2 678,617 - MPMX19_03327 0.74 +0.2 678,834 + MPMX19_03328 0.22 -0.6 678,834 + MPMX19_03328 0.22 +0.4 678,835 - MPMX19_03328 0.22 +0.3 678,835 - MPMX19_03328 0.22 -0.5 678,835 - MPMX19_03328 0.22 +1.0 678,835 - MPMX19_03328 0.22 +0.1 678,835 - MPMX19_03328 0.22 -1.3 678,835 - MPMX19_03328 0.22 +0.5 678,840 + MPMX19_03328 0.22 -0.8 678,840 + MPMX19_03328 0.22 -0.8 678,841 - MPMX19_03328 0.23 -0.6 678,841 - MPMX19_03328 0.23 +0.4 678,921 + MPMX19_03328 0.33 -1.3 678,921 + MPMX19_03328 0.33 -1.1 679,002 + MPMX19_03328 0.44 -0.1 679,002 + MPMX19_03328 0.44 -1.4 679,002 + MPMX19_03328 0.44 -0.8 679,002 + MPMX19_03328 0.44 -0.5 679,003 - MPMX19_03328 0.45 -1.3 679,003 - MPMX19_03328 0.45 +0.4 679,003 - MPMX19_03328 0.45 +0.5 679,294 - MPMX19_03328 0.84 -0.5 679,400 + -0.5 679,400 + -1.3 679,400 + -1.8 679,400 + +0.1 679,400 + -0.8 679,400 + -2.0 679,400 + -1.6 679,401 - +0.5 679,401 - +0.7 679,401 - +1.3 679,401 - +0.1 679,401 - -0.5 679,405 + -0.2 679,405 + -1.3 679,406 - +0.1 679,728 + MPMX19_03329 0.59 +0.4 679,729 - MPMX19_03329 0.59 -0.1 679,729 - MPMX19_03329 0.59 +0.2 679,831 + MPMX19_03329 0.82 -1.5 679,832 - MPMX19_03329 0.83 +1.5 679,833 + MPMX19_03329 0.83 -0.1 679,833 + MPMX19_03329 0.83 -0.3 679,833 + MPMX19_03329 0.83 -1.3 679,834 - MPMX19_03329 0.83 -1.6 679,834 - MPMX19_03329 0.83 -0.9 679,834 - MPMX19_03329 0.83 -1.9 679,938 - -0.4 679,938 - -1.0 679,938 - +2.1 679,959 + +0.5 679,960 - +0.1 679,960 - +0.0 680,039 - +0.9 680,065 + +0.8 680,065 + -0.7 680,065 + -1.4 680,066 - -0.2 680,066 - -0.5 680,066 - +1.1 680,066 - -0.4 680,066 - -1.5 680,102 + -0.4 680,103 - +1.5 680,273 - -0.9 680,333 - -0.1 680,376 + -0.7 680,377 - -1.1 680,377 - -0.3 680,810 + +0.5 680,810 + +0.2 680,811 - -1.1 680,811 - +0.1 680,811 - -0.3 680,882 + MPMX19_03330 0.11 -1.9 680,882 + MPMX19_03330 0.11 -0.6 680,882 + MPMX19_03330 0.11 -1.2 680,883 - MPMX19_03330 0.11 -0.1 680,883 - MPMX19_03330 0.11 -0.3 680,883 - MPMX19_03330 0.11 -0.6 680,883 - MPMX19_03330 0.11 -1.1
Or see this region's nucleotide sequence