Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03179 and MPMX19_03180 overlap by 4 nucleotides MPMX19_03180 and MPMX19_03181 overlap by 4 nucleotides MPMX19_03181 and MPMX19_03182 are separated by 81 nucleotides MPMX19_03182 and MPMX19_03183 are separated by 687 nucleotides
MPMX19_03179: MPMX19_03179 - hypothetical protein, at 475,336 to 476,007
_03179
MPMX19_03180: MPMX19_03180 - hypothetical protein, at 476,004 to 476,321
_03180
MPMX19_03181: MPMX19_03181 - hypothetical protein, at 476,318 to 476,578
_03181
MPMX19_03182: MPMX19_03182 - hypothetical protein, at 476,660 to 477,553
_03182
MPMX19_03183: MPMX19_03183 - hypothetical protein, at 478,241 to 478,546
_03183
Position (kb) 476
477
478 Strain fitness (log2 ratio) -2
-1
0
1 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.754 kb on + strand, within MPMX19_03179 at 475.754 kb on + strand, within MPMX19_03179 at 475.755 kb on - strand, within MPMX19_03179 at 475.755 kb on - strand, within MPMX19_03179 at 475.755 kb on - strand, within MPMX19_03179 at 475.845 kb on - strand, within MPMX19_03179 at 475.845 kb on - strand, within MPMX19_03179 at 475.845 kb on - strand, within MPMX19_03179 at 475.850 kb on + strand, within MPMX19_03179 at 475.850 kb on + strand, within MPMX19_03179 at 475.851 kb on - strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.953 kb on + strand at 475.953 kb on + strand at 475.954 kb on - strand at 475.997 kb on + strand at 475.998 kb on - strand at 476.012 kb on + strand at 476.012 kb on + strand at 476.013 kb on - strand at 476.013 kb on - strand at 476.013 kb on - strand at 476.031 kb on - strand at 476.031 kb on - strand at 476.176 kb on + strand, within MPMX19_03180 at 476.176 kb on + strand, within MPMX19_03180 at 476.176 kb on + strand, within MPMX19_03180 at 476.176 kb on + strand, within MPMX19_03180 at 476.177 kb on - strand, within MPMX19_03180 at 476.177 kb on - strand, within MPMX19_03180 at 476.177 kb on - strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.181 kb on - strand, within MPMX19_03180 at 476.181 kb on - strand, within MPMX19_03180 at 476.213 kb on - strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.584 kb on + strand at 476.585 kb on - strand at 476.585 kb on - strand at 477.091 kb on - strand, within MPMX19_03182 at 477.091 kb on - strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.411 kb on - strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.465 kb on + strand at 477.466 kb on - strand at 477.466 kb on - strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.609 kb on - strand at 477.609 kb on - strand at 477.727 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.761 kb on - strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.036 kb on - strand at 478.036 kb on - strand at 478.101 kb on + strand at 478.147 kb on - strand at 478.147 kb on - strand at 478.233 kb on + strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 475,743 + MPMX19_03179 0.61 +0.2 475,743 + MPMX19_03179 0.61 -0.5 475,743 + MPMX19_03179 0.61 -1.1 475,743 + MPMX19_03179 0.61 -0.8 475,743 + MPMX19_03179 0.61 -1.1 475,744 - MPMX19_03179 0.61 +0.1 475,744 - MPMX19_03179 0.61 -1.5 475,744 - MPMX19_03179 0.61 +0.4 475,744 - MPMX19_03179 0.61 +0.2 475,744 - MPMX19_03179 0.61 +0.2 475,754 + MPMX19_03179 0.62 -0.8 475,754 + MPMX19_03179 0.62 -0.5 475,755 - MPMX19_03179 0.62 -0.1 475,755 - MPMX19_03179 0.62 -2.1 475,755 - MPMX19_03179 0.62 +1.1 475,845 - MPMX19_03179 0.76 +1.2 475,845 - MPMX19_03179 0.76 +0.2 475,845 - MPMX19_03179 0.76 -1.7 475,850 + MPMX19_03179 0.76 +0.1 475,850 + MPMX19_03179 0.76 +0.5 475,851 - MPMX19_03179 0.77 -1.2 475,869 + MPMX19_03179 0.79 -0.1 475,869 + MPMX19_03179 0.79 +0.1 475,869 + MPMX19_03179 0.79 -0.3 475,869 + MPMX19_03179 0.79 -0.1 475,869 + MPMX19_03179 0.79 -0.5 475,869 + MPMX19_03179 0.79 -0.1 475,869 + MPMX19_03179 0.79 -0.5 475,869 + MPMX19_03179 0.79 -0.0 475,869 + MPMX19_03179 0.79 -1.4 475,869 + MPMX19_03179 0.79 +0.5 475,869 + MPMX19_03179 0.79 +0.2 475,870 - MPMX19_03179 0.79 +0.6 475,870 - MPMX19_03179 0.79 -0.2 475,870 - MPMX19_03179 0.79 -1.1 475,870 - MPMX19_03179 0.79 -1.5 475,870 - MPMX19_03179 0.79 -0.1 475,870 - MPMX19_03179 0.79 -1.3 475,953 + -1.3 475,953 + -0.7 475,954 - +1.1 475,997 + -0.3 475,998 - -2.1 476,012 + -0.3 476,012 + +0.1 476,013 - -1.8 476,013 - -0.7 476,013 - -0.8 476,031 - -0.2 476,031 - -0.3 476,176 + MPMX19_03180 0.54 +1.1 476,176 + MPMX19_03180 0.54 -1.6 476,176 + MPMX19_03180 0.54 -0.2 476,176 + MPMX19_03180 0.54 +0.9 476,177 - MPMX19_03180 0.54 -0.6 476,177 - MPMX19_03180 0.54 -1.5 476,177 - MPMX19_03180 0.54 -0.4 476,180 + MPMX19_03180 0.55 +0.7 476,180 + MPMX19_03180 0.55 -0.6 476,180 + MPMX19_03180 0.55 +0.9 476,180 + MPMX19_03180 0.55 +0.0 476,181 - MPMX19_03180 0.56 -1.1 476,181 - MPMX19_03180 0.56 +0.5 476,213 - MPMX19_03180 0.66 +0.8 476,281 + MPMX19_03180 0.87 +0.1 476,281 + MPMX19_03180 0.87 -0.2 476,281 + MPMX19_03180 0.87 -1.4 476,281 + MPMX19_03180 0.87 +0.8 476,281 + MPMX19_03180 0.87 -0.1 476,282 - MPMX19_03180 0.87 -0.5 476,282 - MPMX19_03180 0.87 -0.5 476,282 - MPMX19_03180 0.87 -0.6 476,282 - MPMX19_03180 0.87 -0.0 476,282 - MPMX19_03180 0.87 +0.1 476,282 - MPMX19_03180 0.87 +1.5 476,584 + -0.3 476,585 - -1.1 476,585 - -1.5 477,091 - MPMX19_03182 0.48 -1.0 477,091 - MPMX19_03182 0.48 -1.1 477,410 + MPMX19_03182 0.84 -1.8 477,410 + MPMX19_03182 0.84 -0.3 477,410 + MPMX19_03182 0.84 +0.8 477,411 - MPMX19_03182 0.84 -1.3 477,456 + MPMX19_03182 0.89 -0.7 477,456 + MPMX19_03182 0.89 -1.1 477,456 + MPMX19_03182 0.89 -0.4 477,456 + MPMX19_03182 0.89 -0.8 477,457 - MPMX19_03182 0.89 +0.4 477,457 - MPMX19_03182 0.89 -1.6 477,457 - MPMX19_03182 0.89 +0.8 477,457 - MPMX19_03182 0.89 -0.7 477,465 + -1.8 477,466 - -1.3 477,466 - +0.1 477,573 + +0.5 477,573 + +0.0 477,573 + -0.0 477,574 - +0.5 477,574 - -0.3 477,574 - -0.1 477,575 + +0.4 477,575 + -0.9 477,575 + -0.7 477,575 + -1.9 477,575 + +0.3 477,575 + +0.2 477,575 + +0.8 477,575 + -2.2 477,576 - -1.4 477,576 - -1.5 477,576 - -0.1 477,576 - -0.8 477,576 - +0.1 477,576 - -1.1 477,576 - -1.0 477,576 - -0.8 477,576 - +1.0 477,608 + -0.6 477,608 + +0.3 477,608 + -1.7 477,608 + -2.3 477,609 - -0.5 477,609 - +1.0 477,727 + +0.2 477,760 + -0.1 477,760 + +0.1 477,760 + +0.3 477,760 + -1.3 477,761 - +0.1 477,854 + -0.8 477,854 + -1.8 477,854 + +0.4 477,855 - +0.5 477,855 - -0.5 477,855 - -0.2 477,937 + -0.6 477,937 + -0.4 477,937 + -0.9 477,938 - +0.0 477,938 - -1.1 477,938 - -1.3 477,938 - -0.2 478,035 + +0.4 478,035 + +0.2 478,035 + -1.6 478,035 + -1.4 478,036 - -1.1 478,036 - +0.5 478,101 + -1.2 478,147 - +0.7 478,147 - -0.1 478,233 + +0.9 478,234 - -0.2 478,234 - +1.1 478,234 - +0.6 478,234 - +0.4 478,234 - +0.1 478,234 - -1.5 478,234 - -0.8 478,234 - +0.4 478,234 - -0.8 478,254 - +0.4 478,254 - -0.3 478,254 - -2.1 478,254 - -1.9 478,254 - -0.2 478,535 + -0.0 478,535 + -0.6 478,535 + -1.6 478,535 + -0.2 478,535 + -1.1 478,535 + -0.8 478,535 + -0.6 478,535 + +0.2 478,535 + +0.5 478,535 + -0.8 478,536 - -0.6 478,536 - -0.6 478,536 - -1.9 478,536 - -1.0 478,536 - -1.1 478,536 - -0.9 478,536 - -1.9 478,536 - +0.0 478,536 - -0.4 478,536 - -0.3 478,536 - -0.6 478,536 - -0.5 478,536 - -1.4
Or see this region's nucleotide sequence