Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02914 and MPMX19_02915 are separated by 11 nucleotides MPMX19_02915 and MPMX19_02916 overlap by 4 nucleotides MPMX19_02916 and MPMX19_02917 overlap by 4 nucleotides MPMX19_02917 and MPMX19_02918 overlap by 4 nucleotides
MPMX19_02914: MPMX19_02914 - hypothetical protein, at 168,285 to 169,109
_02914
MPMX19_02915: MPMX19_02915 - hypothetical protein, at 169,121 to 170,047
_02915
MPMX19_02916: MPMX19_02916 - hypothetical protein, at 170,044 to 170,898
_02916
MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899
_02917
MPMX19_02918: MPMX19_02918 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 171,896 to 172,804
_02918
Position (kb) 170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 169.122 kb on + strand at 169.122 kb on + strand at 169.122 kb on + strand at 169.122 kb on + strand at 169.123 kb on - strand at 169.123 kb on - strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.170 kb on + strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.171 kb on - strand at 169.288 kb on - strand, within MPMX19_02915 at 169.644 kb on + strand, within MPMX19_02915 at 169.644 kb on + strand, within MPMX19_02915 at 169.645 kb on - strand, within MPMX19_02915 at 169.645 kb on - strand, within MPMX19_02915 at 169.645 kb on - strand, within MPMX19_02915 at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.007 kb on - strand at 170.007 kb on - strand at 170.007 kb on - strand at 170.318 kb on + strand, within MPMX19_02916 at 170.319 kb on - strand, within MPMX19_02916 at 170.319 kb on - strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.381 kb on - strand, within MPMX19_02916 at 170.381 kb on - strand, within MPMX19_02916 at 170.412 kb on - strand, within MPMX19_02916 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.487 kb on + strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 169,122 + -1.4 169,122 + -0.5 169,122 + -0.2 169,122 + +1.2 169,123 - +0.8 169,123 - -0.7 169,170 + +1.6 169,170 + +0.6 169,170 + +0.8 169,170 + -0.4 169,170 + +0.1 169,170 + -1.1 169,170 + +0.2 169,170 + +1.0 169,170 + -1.0 169,170 + -0.0 169,170 + -0.0 169,170 + -0.4 169,171 - -0.2 169,171 - -1.0 169,171 - +0.2 169,171 - -0.8 169,171 - -1.8 169,171 - +0.9 169,171 - +0.3 169,171 - -1.9 169,171 - -1.5 169,171 - +0.1 169,171 - -0.7 169,171 - -1.0 169,171 - +1.1 169,171 - +0.2 169,171 - -0.4 169,171 - -1.0 169,171 - +0.6 169,171 - -0.6 169,288 - MPMX19_02915 0.18 +1.4 169,644 + MPMX19_02915 0.56 -0.7 169,644 + MPMX19_02915 0.56 -1.0 169,645 - MPMX19_02915 0.57 -0.8 169,645 - MPMX19_02915 0.57 -1.6 169,645 - MPMX19_02915 0.57 -1.6 170,006 + -1.8 170,006 + -1.0 170,006 + -0.4 170,006 + +0.6 170,006 + -0.3 170,007 - -1.2 170,007 - -0.5 170,007 - -0.4 170,318 + MPMX19_02916 0.32 -1.6 170,319 - MPMX19_02916 0.32 +0.6 170,319 - MPMX19_02916 0.32 -0.5 170,380 + MPMX19_02916 0.39 -0.9 170,380 + MPMX19_02916 0.39 -1.6 170,380 + MPMX19_02916 0.39 +0.1 170,380 + MPMX19_02916 0.39 -0.7 170,381 - MPMX19_02916 0.39 -1.4 170,381 - MPMX19_02916 0.39 +0.2 170,412 - MPMX19_02916 0.43 -1.0 171,040 + MPMX19_02917 0.14 +0.2 171,040 + MPMX19_02917 0.14 +1.1 171,040 + MPMX19_02917 0.14 -0.4 171,040 + MPMX19_02917 0.14 -0.6 171,040 + MPMX19_02917 0.14 +1.1 171,040 + MPMX19_02917 0.14 +1.3 171,040 + MPMX19_02917 0.14 -1.7 171,041 - MPMX19_02917 0.15 +1.0 171,041 - MPMX19_02917 0.15 -0.3 171,041 - MPMX19_02917 0.15 +0.2 171,041 - MPMX19_02917 0.15 -0.6 171,041 - MPMX19_02917 0.15 +0.4 171,041 - MPMX19_02917 0.15 -0.4 171,487 + MPMX19_02917 0.59 -0.0 171,488 - MPMX19_02917 0.59 +0.2 171,488 - MPMX19_02917 0.59 -1.8 171,598 + MPMX19_02917 0.70 -0.3 171,598 + MPMX19_02917 0.70 -1.1 171,598 + MPMX19_02917 0.70 -0.2 171,598 + MPMX19_02917 0.70 -0.3 171,598 + MPMX19_02917 0.70 +0.6 171,599 - MPMX19_02917 0.70 -0.0 171,599 - MPMX19_02917 0.70 -1.0
Or see this region's nucleotide sequence