Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01716 and MPMX19_01717 are separated by 3 nucleotides MPMX19_01717 and MPMX19_01718 overlap by 4 nucleotides MPMX19_01718 and MPMX19_01719 overlap by 1 nucleotides MPMX19_01719 and MPMX19_01720 are separated by 109 nucleotides
MPMX19_01716: MPMX19_01716 - hypothetical protein, at 1,809,249 to 1,809,944
_01716
MPMX19_01717: MPMX19_01717 - Pyrophosphatase PpaX, at 1,809,948 to 1,810,652
_01717
MPMX19_01718: MPMX19_01718 - Ribosomal large subunit pseudouridine synthase C, at 1,810,649 to 1,811,716
_01718
MPMX19_01719: MPMX19_01719 - Putative fluoride ion transporter CrcB, at 1,811,716 to 1,812,117
_01719
MPMX19_01720: MPMX19_01720 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 1,812,227 to 1,812,790
_01720
Position (kb) 1810
1811
1812 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1810.103 kb on - strand, within MPMX19_01717 at 1810.117 kb on - strand, within MPMX19_01717 at 1810.117 kb on - strand, within MPMX19_01717 at 1810.399 kb on + strand, within MPMX19_01717 at 1810.399 kb on + strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.400 kb on - strand, within MPMX19_01717 at 1810.702 kb on - strand at 1810.854 kb on + strand, within MPMX19_01718 at 1810.855 kb on - strand, within MPMX19_01718 at 1810.855 kb on - strand, within MPMX19_01718 at 1810.981 kb on - strand, within MPMX19_01718 at 1811.113 kb on - strand, within MPMX19_01718 at 1811.187 kb on - strand, within MPMX19_01718 at 1811.556 kb on + strand, within MPMX19_01718 at 1811.556 kb on + strand, within MPMX19_01718 at 1811.557 kb on - strand, within MPMX19_01718 at 1811.557 kb on - strand, within MPMX19_01718 at 1811.802 kb on - strand, within MPMX19_01719 at 1812.051 kb on - strand, within MPMX19_01719 at 1812.051 kb on - strand, within MPMX19_01719 at 1812.051 kb on - strand, within MPMX19_01719 at 1812.051 kb on - strand, within MPMX19_01719 at 1812.169 kb on + strand at 1812.170 kb on - strand at 1812.170 kb on - strand at 1812.170 kb on - strand at 1812.170 kb on - strand at 1812.170 kb on - strand at 1812.170 kb on - strand at 1812.391 kb on + strand, within MPMX19_01720 at 1812.392 kb on - strand, within MPMX19_01720 at 1812.425 kb on + strand, within MPMX19_01720 at 1812.425 kb on + strand, within MPMX19_01720 at 1812.426 kb on - strand, within MPMX19_01720 at 1812.426 kb on - strand, within MPMX19_01720 at 1812.426 kb on - strand, within MPMX19_01720 at 1812.635 kb on + strand, within MPMX19_01720 at 1812.635 kb on + strand, within MPMX19_01720 at 1812.636 kb on - strand, within MPMX19_01720
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 1,810,103 - MPMX19_01717 0.22 -2.2 1,810,117 - MPMX19_01717 0.24 -1.6 1,810,117 - MPMX19_01717 0.24 -1.0 1,810,399 + MPMX19_01717 0.64 +0.5 1,810,399 + MPMX19_01717 0.64 -0.5 1,810,400 - MPMX19_01717 0.64 +1.3 1,810,400 - MPMX19_01717 0.64 -1.5 1,810,400 - MPMX19_01717 0.64 -0.2 1,810,400 - MPMX19_01717 0.64 +0.9 1,810,400 - MPMX19_01717 0.64 +1.0 1,810,400 - MPMX19_01717 0.64 -0.0 1,810,400 - MPMX19_01717 0.64 -0.2 1,810,400 - MPMX19_01717 0.64 +0.2 1,810,400 - MPMX19_01717 0.64 +1.5 1,810,400 - MPMX19_01717 0.64 -0.3 1,810,400 - MPMX19_01717 0.64 -0.7 1,810,400 - MPMX19_01717 0.64 -0.0 1,810,400 - MPMX19_01717 0.64 +0.5 1,810,400 - MPMX19_01717 0.64 +0.6 1,810,400 - MPMX19_01717 0.64 +0.5 1,810,400 - MPMX19_01717 0.64 +0.6 1,810,702 - +0.8 1,810,854 + MPMX19_01718 0.19 -0.5 1,810,855 - MPMX19_01718 0.19 -0.3 1,810,855 - MPMX19_01718 0.19 -1.5 1,810,981 - MPMX19_01718 0.31 -0.2 1,811,113 - MPMX19_01718 0.43 -1.5 1,811,187 - MPMX19_01718 0.50 -0.9 1,811,556 + MPMX19_01718 0.85 +0.5 1,811,556 + MPMX19_01718 0.85 +2.0 1,811,557 - MPMX19_01718 0.85 -0.5 1,811,557 - MPMX19_01718 0.85 -2.3 1,811,802 - MPMX19_01719 0.21 -0.9 1,812,051 - MPMX19_01719 0.83 +0.2 1,812,051 - MPMX19_01719 0.83 +1.4 1,812,051 - MPMX19_01719 0.83 -0.3 1,812,051 - MPMX19_01719 0.83 -1.9 1,812,169 + -2.2 1,812,170 - +0.1 1,812,170 - -0.5 1,812,170 - -0.9 1,812,170 - -0.0 1,812,170 - -0.5 1,812,170 - -0.9 1,812,391 + MPMX19_01720 0.29 -2.4 1,812,392 - MPMX19_01720 0.29 +0.2 1,812,425 + MPMX19_01720 0.35 -0.1 1,812,425 + MPMX19_01720 0.35 -1.0 1,812,426 - MPMX19_01720 0.35 -0.8 1,812,426 - MPMX19_01720 0.35 -0.0 1,812,426 - MPMX19_01720 0.35 -0.9 1,812,635 + MPMX19_01720 0.72 -0.3 1,812,635 + MPMX19_01720 0.72 +0.5 1,812,636 - MPMX19_01720 0.73 +0.2
Or see this region's nucleotide sequence