Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01062

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01061 and MPMX19_01062 overlap by 4 nucleotidesMPMX19_01062 and MPMX19_01063 overlap by 4 nucleotidesMPMX19_01063 and MPMX19_01064 are separated by 54 nucleotides MPMX19_01061: MPMX19_01061 - Glutathione-regulated potassium-efflux system protein KefC, at 1,099,830 to 1,101,641 _01061 MPMX19_01062: MPMX19_01062 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 1,101,638 to 1,102,435 _01062 MPMX19_01063: MPMX19_01063 - hypothetical protein, at 1,102,432 to 1,103,328 _01063 MPMX19_01064: MPMX19_01064 - hypothetical protein, at 1,103,383 to 1,104,363 _01064 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -3 -2 -1 0 1at 1101.168 kb on + strand, within MPMX19_01061at 1101.168 kb on + strand, within MPMX19_01061at 1101.168 kb on + strand, within MPMX19_01061at 1101.168 kb on + strand, within MPMX19_01061at 1101.168 kb on + strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.169 kb on - strand, within MPMX19_01061at 1101.171 kb on + strand, within MPMX19_01061at 1101.171 kb on + strand, within MPMX19_01061at 1101.171 kb on + strand, within MPMX19_01061at 1101.171 kb on + strand, within MPMX19_01061at 1101.172 kb on - strand, within MPMX19_01061at 1101.172 kb on - strand, within MPMX19_01061at 1101.172 kb on - strand, within MPMX19_01061at 1101.172 kb on - strand, within MPMX19_01061at 1101.792 kb on + strand, within MPMX19_01062at 1101.792 kb on + strand, within MPMX19_01062at 1101.792 kb on + strand, within MPMX19_01062at 1101.792 kb on + strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1101.793 kb on - strand, within MPMX19_01062at 1102.583 kb on + strand, within MPMX19_01063at 1102.583 kb on + strand, within MPMX19_01063at 1102.584 kb on - strand, within MPMX19_01063at 1102.584 kb on - strand, within MPMX19_01063at 1102.584 kb on - strand, within MPMX19_01063at 1102.584 kb on - strand, within MPMX19_01063at 1102.584 kb on - strand, within MPMX19_01063at 1102.761 kb on + strand, within MPMX19_01063at 1102.761 kb on + strand, within MPMX19_01063at 1102.762 kb on - strand, within MPMX19_01063at 1102.762 kb on - strand, within MPMX19_01063at 1102.762 kb on - strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.781 kb on + strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.782 kb on - strand, within MPMX19_01063at 1102.947 kb on + strand, within MPMX19_01063at 1102.948 kb on - strand, within MPMX19_01063at 1102.948 kb on - strand, within MPMX19_01063at 1102.948 kb on - strand, within MPMX19_01063at 1102.948 kb on - strand, within MPMX19_01063at 1102.958 kb on + strand, within MPMX19_01063at 1102.958 kb on + strand, within MPMX19_01063at 1102.958 kb on + strand, within MPMX19_01063at 1102.958 kb on + strand, within MPMX19_01063at 1102.959 kb on - strand, within MPMX19_01063at 1102.959 kb on - strand, within MPMX19_01063at 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.258 kb on + strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.259 kb on - strandat 1103.282 kb on + strandat 1103.282 kb on + strandat 1103.282 kb on + strandat 1103.282 kb on + strandat 1103.282 kb on + strandat 1103.283 kb on - strandat 1103.283 kb on - strandat 1103.283 kb on - strandat 1103.384 kb on + strandat 1103.384 kb on + strandat 1103.384 kb on + strandat 1103.384 kb on + strandat 1103.384 kb on + strandat 1103.384 kb on + strandat 1103.385 kb on - strandat 1103.385 kb on - strandat 1103.385 kb on - strandat 1103.385 kb on - strandat 1103.385 kb on - strandat 1103.385 kb on - strandat 1103.385 kb on - strandat 1103.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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1,101,168 + MPMX19_01061 0.74 +0.0
1,101,168 + MPMX19_01061 0.74 +0.3
1,101,168 + MPMX19_01061 0.74 -1.0
1,101,168 + MPMX19_01061 0.74 -2.4
1,101,168 + MPMX19_01061 0.74 -0.5
1,101,169 - MPMX19_01061 0.74 -0.1
1,101,169 - MPMX19_01061 0.74 +0.6
1,101,169 - MPMX19_01061 0.74 +0.1
1,101,169 - MPMX19_01061 0.74 -0.4
1,101,169 - MPMX19_01061 0.74 -0.7
1,101,169 - MPMX19_01061 0.74 +0.7
1,101,169 - MPMX19_01061 0.74 +1.5
1,101,169 - MPMX19_01061 0.74 +0.6
1,101,169 - MPMX19_01061 0.74 -0.5
1,101,169 - MPMX19_01061 0.74 +0.6
1,101,171 + MPMX19_01061 0.74 +0.5
1,101,171 + MPMX19_01061 0.74 +0.3
1,101,171 + MPMX19_01061 0.74 -0.0
1,101,171 + MPMX19_01061 0.74 -0.7
1,101,172 - MPMX19_01061 0.74 +0.9
1,101,172 - MPMX19_01061 0.74 +1.0
1,101,172 - MPMX19_01061 0.74 +0.9
1,101,172 - MPMX19_01061 0.74 +1.1
1,101,792 + MPMX19_01062 0.19 -1.4
1,101,792 + MPMX19_01062 0.19 +1.5
1,101,792 + MPMX19_01062 0.19 -0.6
1,101,792 + MPMX19_01062 0.19 -2.9
1,101,793 - MPMX19_01062 0.19 +0.2
1,101,793 - MPMX19_01062 0.19 -0.3
1,101,793 - MPMX19_01062 0.19 +0.0
1,101,793 - MPMX19_01062 0.19 +0.1
1,101,793 - MPMX19_01062 0.19 -0.8
1,101,793 - MPMX19_01062 0.19 -1.3
1,101,793 - MPMX19_01062 0.19 +0.5
1,101,793 - MPMX19_01062 0.19 +0.5
1,102,583 + MPMX19_01063 0.17 -0.1
1,102,583 + MPMX19_01063 0.17 +0.2
1,102,584 - MPMX19_01063 0.17 +0.7
1,102,584 - MPMX19_01063 0.17 -0.1
1,102,584 - MPMX19_01063 0.17 -2.0
1,102,584 - MPMX19_01063 0.17 -0.4
1,102,584 - MPMX19_01063 0.17 -2.7
1,102,761 + MPMX19_01063 0.37 -0.2
1,102,761 + MPMX19_01063 0.37 +0.0
1,102,762 - MPMX19_01063 0.37 -0.5
1,102,762 - MPMX19_01063 0.37 -1.1
1,102,762 - MPMX19_01063 0.37 -0.2
1,102,781 + MPMX19_01063 0.39 +0.5
1,102,781 + MPMX19_01063 0.39 -0.1
1,102,781 + MPMX19_01063 0.39 -1.1
1,102,781 + MPMX19_01063 0.39 -0.1
1,102,781 + MPMX19_01063 0.39 -1.5
1,102,781 + MPMX19_01063 0.39 -1.3
1,102,781 + MPMX19_01063 0.39 -0.5
1,102,781 + MPMX19_01063 0.39 +0.1
1,102,781 + MPMX19_01063 0.39 -0.2
1,102,782 - MPMX19_01063 0.39 -0.2
1,102,782 - MPMX19_01063 0.39 -0.3
1,102,782 - MPMX19_01063 0.39 -0.2
1,102,782 - MPMX19_01063 0.39 +1.5
1,102,782 - MPMX19_01063 0.39 -0.4
1,102,782 - MPMX19_01063 0.39 +1.1
1,102,782 - MPMX19_01063 0.39 -0.5
1,102,782 - MPMX19_01063 0.39 -0.6
1,102,947 + MPMX19_01063 0.57 -0.1
1,102,948 - MPMX19_01063 0.58 +0.3
1,102,948 - MPMX19_01063 0.58 -0.3
1,102,948 - MPMX19_01063 0.58 -0.3
1,102,948 - MPMX19_01063 0.58 -1.0
1,102,958 + MPMX19_01063 0.59 -1.3
1,102,958 + MPMX19_01063 0.59 -0.1
1,102,958 + MPMX19_01063 0.59 +0.4
1,102,958 + MPMX19_01063 0.59 +1.1
1,102,959 - MPMX19_01063 0.59 -1.1
1,102,959 - MPMX19_01063 0.59 -0.9
1,103,258 + -0.6
1,103,258 + +0.5
1,103,258 + -0.5
1,103,258 + -1.5
1,103,258 + -1.6
1,103,258 + +0.1
1,103,258 + -0.8
1,103,258 + +0.8
1,103,258 + +0.5
1,103,258 + -1.5
1,103,259 - +0.2
1,103,259 - +1.1
1,103,259 - -0.6
1,103,259 - -1.0
1,103,259 - +0.5
1,103,259 - -0.1
1,103,259 - +0.9
1,103,259 - +0.3
1,103,259 - -0.3
1,103,259 - -0.3
1,103,282 + +0.7
1,103,282 + -1.4
1,103,282 + -1.1
1,103,282 + -1.0
1,103,282 + -0.9
1,103,283 - +0.2
1,103,283 - -0.4
1,103,283 - +1.3
1,103,384 + +0.4
1,103,384 + -1.2
1,103,384 + +0.5
1,103,384 + +0.9
1,103,384 + +0.3
1,103,384 + +0.5
1,103,385 - -0.2
1,103,385 - -0.2
1,103,385 - +0.0
1,103,385 - -1.7
1,103,385 - +0.7
1,103,385 - -0.2
1,103,385 - +0.3
1,103,385 - -1.2

Or see this region's nucleotide sequence