Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00296 and MPMX19_00297 are separated by 40 nucleotides MPMX19_00297 and MPMX19_00298 are separated by 322 nucleotides
MPMX19_00296: MPMX19_00296 - (S)-sulfolactate dehydrogenase, at 295,892 to 296,845
_00296
MPMX19_00297: MPMX19_00297 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 296,886 to 297,554
_00297
MPMX19_00298: MPMX19_00298 - hypothetical protein, at 297,877 to 298,935
_00298
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.915 kb on - strand at 296.915 kb on - strand at 296.915 kb on - strand at 296.971 kb on + strand, within MPMX19_00297 at 296.972 kb on - strand, within MPMX19_00297 at 297.353 kb on + strand, within MPMX19_00297 at 297.354 kb on - strand, within MPMX19_00297 at 297.626 kb on - strand at 297.760 kb on - strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 298.045 kb on + strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 296,064 + MPMX19_00296 0.18 +0.0 296,064 + MPMX19_00296 0.18 +0.3 296,064 + MPMX19_00296 0.18 +0.9 296,064 + MPMX19_00296 0.18 +0.0 296,064 + MPMX19_00296 0.18 +0.9 296,064 + MPMX19_00296 0.18 +2.1 296,064 + MPMX19_00296 0.18 -1.8 296,064 + MPMX19_00296 0.18 -0.1 296,064 + MPMX19_00296 0.18 -0.8 296,064 + MPMX19_00296 0.18 +0.9 296,064 + MPMX19_00296 0.18 +0.4 296,065 - MPMX19_00296 0.18 -0.2 296,065 - MPMX19_00296 0.18 +0.6 296,065 - MPMX19_00296 0.18 +1.2 296,065 - MPMX19_00296 0.18 -2.0 296,065 - MPMX19_00296 0.18 +0.0 296,065 - MPMX19_00296 0.18 -1.2 296,065 - MPMX19_00296 0.18 -0.1 296,065 - MPMX19_00296 0.18 +0.2 296,065 - MPMX19_00296 0.18 +0.9 296,065 - MPMX19_00296 0.18 -1.4 296,065 - MPMX19_00296 0.18 +0.8 296,065 - MPMX19_00296 0.18 +0.8 296,223 + MPMX19_00296 0.35 +0.5 296,223 + MPMX19_00296 0.35 -0.3 296,223 + MPMX19_00296 0.35 +0.4 296,223 + MPMX19_00296 0.35 +0.4 296,223 + MPMX19_00296 0.35 +0.5 296,224 - MPMX19_00296 0.35 -0.5 296,224 - MPMX19_00296 0.35 +0.7 296,224 - MPMX19_00296 0.35 -0.2 296,224 - MPMX19_00296 0.35 +1.2 296,224 - MPMX19_00296 0.35 -1.2 296,263 + MPMX19_00296 0.39 +0.0 296,263 + MPMX19_00296 0.39 -0.1 296,263 + MPMX19_00296 0.39 -1.3 296,263 + MPMX19_00296 0.39 +0.4 296,263 + MPMX19_00296 0.39 +0.3 296,263 + MPMX19_00296 0.39 +0.3 296,263 + MPMX19_00296 0.39 +0.3 296,264 - MPMX19_00296 0.39 -0.7 296,264 - MPMX19_00296 0.39 -0.7 296,264 - MPMX19_00296 0.39 -0.1 296,264 - MPMX19_00296 0.39 -0.2 296,264 - MPMX19_00296 0.39 +0.6 296,264 - MPMX19_00296 0.39 +0.0 296,264 - MPMX19_00296 0.39 -1.9 296,264 - MPMX19_00296 0.39 -0.1 296,264 - MPMX19_00296 0.39 -2.3 296,264 - MPMX19_00296 0.39 +0.1 296,490 + MPMX19_00296 0.63 +1.6 296,490 + MPMX19_00296 0.63 -1.1 296,490 + MPMX19_00296 0.63 -0.1 296,490 + MPMX19_00296 0.63 -1.2 296,490 + MPMX19_00296 0.63 +0.0 296,490 + MPMX19_00296 0.63 +0.0 296,490 + MPMX19_00296 0.63 +1.0 296,490 + MPMX19_00296 0.63 -0.8 296,490 + MPMX19_00296 0.63 -0.8 296,490 + MPMX19_00296 0.63 -0.5 296,490 + MPMX19_00296 0.63 -2.1 296,490 + MPMX19_00296 0.63 -1.3 296,490 + MPMX19_00296 0.63 +0.2 296,490 + MPMX19_00296 0.63 +0.9 296,490 + MPMX19_00296 0.63 -0.2 296,491 - MPMX19_00296 0.63 -0.3 296,491 - MPMX19_00296 0.63 +0.4 296,491 - MPMX19_00296 0.63 -0.5 296,491 - MPMX19_00296 0.63 -2.0 296,491 - MPMX19_00296 0.63 -1.2 296,491 - MPMX19_00296 0.63 +0.3 296,491 - MPMX19_00296 0.63 +0.4 296,491 - MPMX19_00296 0.63 +0.4 296,491 - MPMX19_00296 0.63 +0.7 296,491 - MPMX19_00296 0.63 -2.5 296,491 - MPMX19_00296 0.63 -1.3 296,491 - MPMX19_00296 0.63 +0.1 296,491 - MPMX19_00296 0.63 -0.7 296,491 - MPMX19_00296 0.63 -1.1 296,733 + MPMX19_00296 0.88 -0.5 296,733 + MPMX19_00296 0.88 -0.3 296,733 + MPMX19_00296 0.88 -1.0 296,733 + MPMX19_00296 0.88 -0.4 296,733 + MPMX19_00296 0.88 -0.1 296,733 + MPMX19_00296 0.88 -0.4 296,733 + MPMX19_00296 0.88 -2.8 296,733 + MPMX19_00296 0.88 +0.4 296,733 + MPMX19_00296 0.88 -1.0 296,733 + MPMX19_00296 0.88 -0.9 296,734 - MPMX19_00296 0.88 -0.9 296,734 - MPMX19_00296 0.88 -0.7 296,734 - MPMX19_00296 0.88 -0.1 296,734 - MPMX19_00296 0.88 +0.8 296,734 - MPMX19_00296 0.88 +0.1 296,734 - MPMX19_00296 0.88 -2.3 296,734 - MPMX19_00296 0.88 -1.2 296,734 - MPMX19_00296 0.88 -0.5 296,734 - MPMX19_00296 0.88 +0.6 296,734 - MPMX19_00296 0.88 +1.0 296,734 - MPMX19_00296 0.88 +0.3 296,734 - MPMX19_00296 0.88 -0.7 296,734 - MPMX19_00296 0.88 -0.6 296,734 - MPMX19_00296 0.88 -0.5 296,734 - MPMX19_00296 0.88 +0.0 296,734 - MPMX19_00296 0.88 -0.6 296,734 - MPMX19_00296 0.88 +0.7 296,754 + -0.9 296,754 + -0.9 296,754 + -0.9 296,754 + +0.4 296,754 + -0.4 296,754 + +0.1 296,754 + -1.8 296,754 + +0.9 296,754 + +0.1 296,754 + +0.3 296,754 + -0.1 296,755 - -0.6 296,755 - +1.3 296,755 - +0.6 296,755 - -0.7 296,755 - -2.7 296,755 - -0.0 296,755 - -0.6 296,755 - -0.2 296,755 - -0.3 296,755 - -1.7 296,755 - +0.2 296,755 - -1.5 296,755 - -0.6 296,755 - +1.1 296,755 - -0.5 296,769 + +2.1 296,769 + -1.2 296,769 + -0.8 296,769 + -1.2 296,770 - -0.0 296,770 - -0.6 296,770 - +0.0 296,770 - -0.4 296,770 - -0.6 296,914 + +0.3 296,914 + +0.1 296,914 + -0.6 296,914 + +0.7 296,914 + +0.4 296,914 + +1.2 296,914 + -1.1 296,915 - -0.9 296,915 - -1.1 296,915 - -2.1 296,971 + MPMX19_00297 0.13 +0.0 296,972 - MPMX19_00297 0.13 -0.4 297,353 + MPMX19_00297 0.70 -1.9 297,354 - MPMX19_00297 0.70 -1.1 297,626 - -1.3 297,760 - -0.1 297,876 + +0.9 297,876 + -0.7 297,876 + +0.4 297,876 + +0.0 297,876 + -1.0 297,876 + -0.4 297,876 + -0.2 297,876 + -1.1 297,876 + -0.7 297,876 + +0.2 297,876 + -2.7 297,876 + -1.4 297,876 + +0.4 297,876 + +1.1 297,876 + +0.1 297,876 + +0.6 297,876 + -0.3 297,876 + -0.1 297,876 + -0.6 297,876 + -0.4 297,876 + +0.1 297,876 + -0.1 297,876 + +0.5 297,876 + -1.3 297,876 + +0.3 297,876 + +0.3 297,876 + +1.6 297,876 + +1.6 297,876 + -1.4 297,876 + -1.1 297,876 + +0.8 297,877 - -0.3 297,877 - +0.6 297,877 - -0.6 297,877 - -0.4 297,877 - +0.3 297,877 - -1.6 297,877 - -0.1 297,877 - -0.6 297,877 - +1.9 297,877 - -1.1 297,877 - -1.0 297,877 - -0.2 297,877 - -0.2 297,877 - -1.2 297,877 - -0.2 297,877 - +1.3 297,877 - -0.1 297,877 - +0.9 297,877 - -1.7 297,877 - +0.7 297,877 - -1.2 297,877 - +0.1 297,877 - -1.1 297,877 - -0.9 297,877 - +0.0 297,882 + +0.7 297,882 + +0.6 297,882 + -0.3 297,882 + +1.0 297,882 + -1.0 297,882 + +0.2 297,882 + -0.1 297,882 + +0.5 297,882 + +0.4 297,883 - -1.7 297,883 - +0.0 297,883 - -1.2 297,883 - -0.3 297,883 - -0.6 297,883 - -0.4 297,883 - -0.4 297,883 - -0.4 297,883 - -1.6 297,883 - -0.8 297,883 - +0.2 297,883 - -2.0 297,883 - -1.1 297,883 - +0.0 298,045 + MPMX19_00298 0.16 -1.9 298,079 - MPMX19_00298 0.19 +1.4 298,079 - MPMX19_00298 0.19 -0.5 298,079 - MPMX19_00298 0.19 -0.4 298,234 + MPMX19_00298 0.34 -0.4 298,234 + MPMX19_00298 0.34 -0.2 298,234 + MPMX19_00298 0.34 -0.9 298,234 + MPMX19_00298 0.34 -1.6 298,234 + MPMX19_00298 0.34 +0.3 298,234 + MPMX19_00298 0.34 +0.3 298,234 + MPMX19_00298 0.34 -0.2 298,324 + MPMX19_00298 0.42 +0.4 298,324 + MPMX19_00298 0.42 -0.4 298,324 + MPMX19_00298 0.42 -1.0 298,324 + MPMX19_00298 0.42 -2.9 298,324 + MPMX19_00298 0.42 +0.7 298,324 + MPMX19_00298 0.42 +0.3 298,325 - MPMX19_00298 0.42 +0.6 298,325 - MPMX19_00298 0.42 -1.1 298,325 - MPMX19_00298 0.42 +0.3 298,325 - MPMX19_00298 0.42 -0.1 298,325 - MPMX19_00298 0.42 +0.2 298,325 - MPMX19_00298 0.42 +0.6 298,325 - MPMX19_00298 0.42 -0.1 298,325 - MPMX19_00298 0.42 +0.5 298,325 - MPMX19_00298 0.42 -1.1 298,325 - MPMX19_00298 0.42 -1.2
Or see this region's nucleotide sequence