Strain Fitness in Methylophilus sp. DMC18 around GFF890

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
125,848	+		GFF889	0.53	-0.6
125,848	+		GFF889	0.53	+1.0
125,852	+		GFF889	0.53	-0.0
125,852	+		GFF889	0.53	-1.6
125,852	+		GFF889	0.53	-0.2
125,853	-		GFF889	0.53	+0.8
125,896	-		GFF889	0.56	-1.8
126,432	+		GFF889	0.88	-0.3
126,570	+				-0.9
126,592	-				-0.2
126,672	-				+0.1
126,672	-				-0.7
126,672	-				-0.0
126,678	+				+0.2
126,678	+				-0.3
126,679	-				-1.2
126,679	-				-0.3
126,679	-				-0.4
126,683	+				-0.2
126,683	+				-1.8
126,683	+				-0.5
126,683	+				-0.9
126,684	-				-1.4
126,684	-				-0.8
126,684	-				+0.6
126,688	-				-2.1
126,688	-				-0.8
126,705	+				-0.5
126,706	-				+0.2
126,707	+				-0.8
126,707	+				+0.3
126,709	+				-0.9
126,709	+				+0.2
126,709	+				-0.0
126,731	+				+1.0
126,732	-				-0.5
126,744	+				-0.8
126,753	+				-0.0
126,753	+				-0.3
126,753	+				-0.6
126,753	+				-0.9
126,754	-				-0.0
126,754	-				-0.6
126,754	-				-1.5
126,774	-				-0.6
126,774	-				-1.4
126,774	-				-0.9
126,819	+				-1.6
126,819	+				-0.9
126,819	+				-0.5
126,820	-				-0.5
126,820	-				-0.8
126,820	-				-0.5
126,820	-				-0.3
126,820	-				-0.0
126,823	+				-1.0
126,838	+				-0.5
126,838	+				-0.5
126,839	-				-0.5
126,842	+				-0.4
126,842	+				-0.0
126,843	-				-1.0
126,843	-				-0.0
126,843	-				-0.0
126,843	-				-0.6
126,843	-				-1.6
126,880	-				+0.4
126,899	-				-0.4
126,899	-				+1.0
126,899	-				-0.8
126,915	+		GFF890	0.11	+0.5
126,915	+		GFF890	0.11	+0.1
126,915	+		GFF890	0.11	+0.5
126,915	+		GFF890	0.11	-1.9
126,915	+		GFF890	0.11	-1.3
126,949	+		GFF890	0.15	-0.4
126,949	+		GFF890	0.15	-0.9
126,949	+		GFF890	0.15	-0.6
126,949	+		GFF890	0.15	-1.4
126,950	-		GFF890	0.15	-0.6
126,950	-		GFF890	0.15	-1.0
126,950	-		GFF890	0.15	-1.8
126,951	+		GFF890	0.15	+1.0
126,951	+		GFF890	0.15	-0.0
126,951	+		GFF890	0.15	-1.0
126,951	+		GFF890	0.15	+0.6
126,990	+		GFF890	0.19	-0.4
126,990	+		GFF890	0.19	-0.7
126,990	+		GFF890	0.19	+0.0
126,991	-		GFF890	0.19	-0.7
127,086	-		GFF890	0.30	-0.6
127,103	+		GFF890	0.32	-0.1
127,124	+		GFF890	0.35	+0.4
127,129	+		GFF890	0.35	+0.3
127,130	-		GFF890	0.36	-0.6
127,130	-		GFF890	0.36	-0.8
127,148	+		GFF890	0.38	+0.5
127,148	+		GFF890	0.38	+1.3
127,149	-		GFF890	0.38	-1.2
127,149	-		GFF890	0.38	-0.6
127,235	+		GFF890	0.48	-1.6
127,236	-		GFF890	0.48	-0.4
127,236	-		GFF890	0.48	-0.2
127,236	-		GFF890	0.48	-0.8
127,236	-		GFF890	0.48	+1.2
127,236	-		GFF890	0.48	-0.0
127,272	+		GFF890	0.52	-0.4
127,272	+		GFF890	0.52	-0.6
127,272	+		GFF890	0.52	+0.7
127,272	+		GFF890	0.52	+1.5
127,272	+		GFF890	0.52	+0.2
127,273	-		GFF890	0.52	-0.8
127,274	+		GFF890	0.52	-0.1
127,278	-		GFF890	0.53	-0.9
127,278	-		GFF890	0.53	+0.4
127,295	+		GFF890	0.55	-0.0
127,295	+		GFF890	0.55	+0.3
127,295	+		GFF890	0.55	+0.2
127,323	+		GFF890	0.58	-0.6
127,323	+		GFF890	0.58	-0.8
127,323	+		GFF890	0.58	-0.9
127,323	+		GFF890	0.58	-0.6
127,324	-		GFF890	0.58	-0.9
127,324	-		GFF890	0.58	+0.5
127,324	-		GFF890	0.58	-1.0
127,324	-		GFF890	0.58	-1.6
127,358	+		GFF890	0.62	+0.2
127,403	+		GFF890	0.67	-1.6
127,404	-		GFF890	0.67	+0.5
127,404	-		GFF890	0.67	-2.0
127,404	-		GFF890	0.67	-0.2
127,448	+		GFF890	0.72	+0.3
127,448	+		GFF890	0.72	-1.0
127,448	+		GFF890	0.72	-2.0
127,448	+		GFF890	0.72	-1.5
127,449	-		GFF890	0.72	-0.0
127,509	+		GFF890	0.79	-0.6
127,510	-		GFF890	0.79	-0.1
127,510	-		GFF890	0.79	+0.6
127,513	+		GFF890	0.80	-1.0
127,513	+		GFF890	0.80	+0.3
127,513	+		GFF890	0.80	+0.5
127,513	+		GFF890	0.80	-0.0
127,514	-		GFF890	0.80	-0.2
127,514	-		GFF890	0.80	+0.7
127,526	+		GFF890	0.81	-0.3
127,526	+		GFF890	0.81	-1.0
127,526	+		GFF890	0.81	-1.4
127,527	-		GFF890	0.81	-0.7
127,527	-		GFF890	0.81	-1.6
127,529	+		GFF890	0.82	+0.4
127,537	+		GFF890	0.82	+1.0
127,537	+		GFF890	0.82	-0.5
127,537	+		GFF890	0.82	-0.7
127,537	+		GFF890	0.82	-1.0
127,538	-		GFF890	0.83	+0.6
127,538	-		GFF890	0.83	-0.6
127,538	-		GFF890	0.83	-1.0
127,538	-		GFF890	0.83	-0.6
127,538	-		GFF890	0.83	-0.6
127,583	+		GFF890	0.88	-2.2
127,613	+				-1.0
127,613	+				-1.0
127,613	+				+1.0
127,622	+				-0.4
127,622	+				-1.6
127,633	+				-1.4
127,634	-				+0.2
127,634	-				-0.8
127,715	+				-0.6
127,715	+				-1.7
127,715	+				-1.8
127,715	+				-0.0
127,716	-				+0.2
127,716	-				+0.2
127,716	-				-0.6
127,716	-				-2.2
127,716	-				-0.6
127,716	-				-1.0
127,721	+				-1.5
127,721	+				-0.5
127,721	+				-2.2
127,722	-				-1.7
127,722	-				-0.9
127,725	+				-1.1
127,725	+				-0.3
127,726	-				-0.6
127,734	+				-0.4
127,735	-				-1.5
127,763	-				-0.8
127,766	-				-1.1
127,774	+				-0.6
127,805	+				-0.3
127,805	+				-0.9
127,805	+				-0.3
127,806	-				-0.0
127,806	-				-1.6
127,806	-				-1.4
127,806	-				+0.2
127,806	-				+0.7
127,806	-				+0.1
127,830	-				-1.4
127,836	+				+0.4
127,843	+				-0.0
127,881	+				-0.3
127,881	+				-0.2
127,882	-				-0.3
127,912	+				+0.7
127,913	-				-1.4
127,917	-				-0.3
127,939	+				-1.6
127,940	-				-0.8
127,940	-				-0.1
127,994	-				-0.0
128,020	+				-1.2
128,020	+				-0.6
128,020	+				-1.1
128,020	+				-0.4
128,021	-				-1.8
128,021	-				+1.0
128,032	+				-2.6
128,033	-				+1.0
128,033	-				-0.0
128,047	+				-1.0
128,047	+				+0.7
128,047	+				-0.8
128,047	+				-1.0
128,047	+				-0.4
128,047	+				+0.5
128,048	-				+0.5
128,048	-				-0.4
128,054	+				-0.5
128,054	+				+0.3
128,054	+				-1.6
128,055	-				-2.8
128,055	-				-1.0
128,063	+				-1.0
128,063	+				-0.8
128,064	-				+0.5
128,067	+				-0.4
128,067	+				-0.6
128,067	+				+0.4
128,068	-				+0.5
128,068	-				+0.7
128,068	-				-0.9
128,076	-				-2.2
128,076	-				-0.4
128,114	+				+0.4
128,114	+				-0.9
128,115	-				-0.1
128,120	-				-1.4
128,120	-				-1.4
128,131	-				-1.0
128,139	+				-1.4
128,154	-				+0.4
128,244	+				-0.0
128,619	+		GFF891	0.39	+1.8
128,683	+		GFF891	0.45	-0.0
128,683	+		GFF891	0.45	-0.4