Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF59 and GFF60 are separated by 2 nucleotides GFF60 and GFF61 are separated by 176 nucleotides GFF61 and GFF62 are separated by 114 nucleotides
GFF59 - N-formylmaleamate deformylase, at 69,163 to 70,041
GFF59
GFF60 - LexA repressor, at 70,044 to 70,664
GFF60
GFF61 - LexA repressor, at 70,841 to 71,464
GFF61
GFF62 - hypothetical protein, at 71,579 to 72,394
GFF62
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.866 kb on + strand, within GFF59 at 69.866 kb on + strand, within GFF59 at 69.866 kb on + strand, within GFF59 at 69.867 kb on - strand, within GFF59 at 69.904 kb on + strand, within GFF59 at 69.904 kb on + strand, within GFF59 at 69.904 kb on + strand, within GFF59 at 69.904 kb on + strand, within GFF59 at 69.905 kb on - strand, within GFF59 at 69.905 kb on - strand, within GFF59 at 69.905 kb on - strand, within GFF59 at 69.905 kb on - strand, within GFF59 at 69.905 kb on - strand, within GFF59 at 69.905 kb on - strand, within GFF59 at 69.905 kb on - strand, within GFF59 at 69.969 kb on - strand at 69.969 kb on - strand at 69.969 kb on - strand at 70.026 kb on + strand at 70.027 kb on - strand at 70.046 kb on - strand at 70.056 kb on - strand at 70.056 kb on - strand at 70.121 kb on - strand, within GFF60 at 70.121 kb on - strand, within GFF60 at 70.147 kb on - strand, within GFF60 at 70.213 kb on - strand, within GFF60 at 70.213 kb on - strand, within GFF60 at 70.213 kb on - strand, within GFF60 at 70.319 kb on - strand, within GFF60 at 70.345 kb on + strand, within GFF60 at 70.345 kb on + strand, within GFF60 at 70.346 kb on - strand, within GFF60 at 70.346 kb on - strand, within GFF60 at 70.456 kb on - strand, within GFF60 at 70.456 kb on - strand, within GFF60 at 70.456 kb on - strand, within GFF60 at 70.456 kb on - strand, within GFF60 at 70.456 kb on - strand, within GFF60 at 70.464 kb on - strand, within GFF60 at 70.523 kb on - strand, within GFF60 at 70.523 kb on - strand, within GFF60 at 70.563 kb on - strand, within GFF60 at 70.646 kb on + strand at 70.647 kb on - strand at 70.647 kb on - strand at 70.672 kb on - strand at 70.838 kb on + strand at 70.838 kb on + strand at 70.839 kb on - strand at 70.839 kb on - strand at 70.842 kb on + strand at 70.842 kb on + strand at 70.842 kb on + strand at 70.843 kb on - strand at 70.843 kb on - strand at 70.843 kb on - strand at 70.843 kb on - strand at 70.843 kb on - strand at 70.920 kb on + strand, within GFF61 at 70.943 kb on + strand, within GFF61 at 70.944 kb on - strand, within GFF61 at 70.944 kb on - strand, within GFF61 at 71.020 kb on + strand, within GFF61 at 71.047 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.105 kb on + strand, within GFF61 at 71.125 kb on + strand, within GFF61 at 71.125 kb on + strand, within GFF61 at 71.125 kb on + strand, within GFF61 at 71.126 kb on - strand, within GFF61 at 71.146 kb on - strand, within GFF61 at 71.146 kb on - strand, within GFF61 at 71.222 kb on + strand, within GFF61 at 71.223 kb on - strand, within GFF61 at 71.223 kb on - strand, within GFF61 at 71.223 kb on - strand, within GFF61 at 71.223 kb on - strand, within GFF61 at 71.229 kb on - strand, within GFF61 at 71.245 kb on + strand, within GFF61 at 71.245 kb on + strand, within GFF61 at 71.320 kb on - strand, within GFF61 at 71.320 kb on - strand, within GFF61 at 71.393 kb on + strand, within GFF61 at 71.393 kb on + strand, within GFF61 at 71.394 kb on - strand, within GFF61 at 71.546 kb on - strand at 71.547 kb on + strand at 71.548 kb on - strand at 71.548 kb on - strand at 71.609 kb on + strand at 71.609 kb on + strand at 71.609 kb on + strand at 71.609 kb on + strand at 71.609 kb on + strand at 71.610 kb on - strand at 71.610 kb on - strand at 71.610 kb on - strand at 71.610 kb on - strand at 71.610 kb on - strand at 71.812 kb on + strand, within GFF62 at 71.812 kb on + strand, within GFF62 at 71.813 kb on - strand, within GFF62 at 71.824 kb on + strand, within GFF62 at 71.825 kb on - strand, within GFF62 at 71.825 kb on - strand, within GFF62 at 71.825 kb on - strand, within GFF62 at 71.825 kb on - strand, within GFF62 at 71.837 kb on + strand, within GFF62 at 71.915 kb on + strand, within GFF62 at 71.916 kb on - strand, within GFF62 at 71.916 kb on - strand, within GFF62 at 71.941 kb on + strand, within GFF62 at 71.942 kb on - strand, within GFF62 at 71.992 kb on + strand, within GFF62 at 71.992 kb on + strand, within GFF62 at 71.992 kb on + strand, within GFF62 at 71.992 kb on + strand, within GFF62 at 71.993 kb on - strand, within GFF62 at 72.036 kb on + strand, within GFF62 at 72.089 kb on + strand, within GFF62 at 72.093 kb on + strand, within GFF62 at 72.093 kb on + strand, within GFF62 at 72.093 kb on + strand, within GFF62 at 72.094 kb on - strand, within GFF62 at 72.179 kb on + strand, within GFF62 at 72.180 kb on - strand, within GFF62 at 72.180 kb on - strand, within GFF62 at 72.236 kb on + strand, within GFF62 at 72.236 kb on + strand, within GFF62 at 72.237 kb on - strand, within GFF62 at 72.237 kb on - strand, within GFF62 at 72.240 kb on + strand, within GFF62 at 72.253 kb on - strand, within GFF62 at 72.268 kb on + strand, within GFF62 at 72.268 kb on + strand, within GFF62 at 72.269 kb on - strand, within GFF62 at 72.269 kb on - strand, within GFF62 at 72.269 kb on - strand, within GFF62 at 72.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 69,866 + GFF59 0.80 -0.5 69,866 + GFF59 0.80 -2.6 69,866 + GFF59 0.80 -1.2 69,867 - GFF59 0.80 -1.2 69,904 + GFF59 0.84 -1.4 69,904 + GFF59 0.84 -0.2 69,904 + GFF59 0.84 -0.7 69,904 + GFF59 0.84 +0.4 69,905 - GFF59 0.84 -0.7 69,905 - GFF59 0.84 -0.0 69,905 - GFF59 0.84 +0.5 69,905 - GFF59 0.84 +0.5 69,905 - GFF59 0.84 -1.0 69,905 - GFF59 0.84 -0.5 69,905 - GFF59 0.84 +0.0 69,969 - +0.2 69,969 - -0.8 69,969 - -1.2 70,026 + -0.5 70,027 - +2.0 70,046 - -0.1 70,056 - -0.7 70,056 - -0.7 70,121 - GFF60 0.12 +0.9 70,121 - GFF60 0.12 -0.6 70,147 - GFF60 0.17 -0.1 70,213 - GFF60 0.27 -0.0 70,213 - GFF60 0.27 +0.6 70,213 - GFF60 0.27 -0.4 70,319 - GFF60 0.44 -1.0 70,345 + GFF60 0.48 -0.8 70,345 + GFF60 0.48 -0.2 70,346 - GFF60 0.49 -0.0 70,346 - GFF60 0.49 -0.7 70,456 - GFF60 0.66 +0.5 70,456 - GFF60 0.66 -1.0 70,456 - GFF60 0.66 -0.3 70,456 - GFF60 0.66 +0.7 70,456 - GFF60 0.66 +0.1 70,464 - GFF60 0.68 -1.0 70,523 - GFF60 0.77 -1.0 70,523 - GFF60 0.77 -0.3 70,563 - GFF60 0.84 +0.4 70,646 + -0.2 70,647 - +0.1 70,647 - +0.5 70,672 - -0.6 70,838 + -0.4 70,838 + +0.6 70,839 - -1.1 70,839 - -0.4 70,842 + -1.2 70,842 + -0.3 70,842 + +0.2 70,843 - -1.0 70,843 - -0.4 70,843 - -0.8 70,843 - -1.4 70,843 - -0.7 70,920 + GFF61 0.13 -0.2 70,943 + GFF61 0.16 -2.2 70,944 - GFF61 0.17 -0.3 70,944 - GFF61 0.17 -0.6 71,020 + GFF61 0.29 -1.4 71,047 + GFF61 0.33 -0.3 71,105 + GFF61 0.42 -1.0 71,105 + GFF61 0.42 +0.7 71,105 + GFF61 0.42 -1.0 71,105 + GFF61 0.42 +1.6 71,105 + GFF61 0.42 -1.1 71,105 + GFF61 0.42 +0.3 71,105 + GFF61 0.42 -1.4 71,105 + GFF61 0.42 +0.6 71,105 + GFF61 0.42 -0.7 71,105 + GFF61 0.42 -0.6 71,105 + GFF61 0.42 -1.5 71,105 + GFF61 0.42 -1.6 71,125 + GFF61 0.46 -1.6 71,125 + GFF61 0.46 -1.4 71,125 + GFF61 0.46 +1.3 71,126 - GFF61 0.46 +0.2 71,146 - GFF61 0.49 -1.6 71,146 - GFF61 0.49 -0.4 71,222 + GFF61 0.61 -0.7 71,223 - GFF61 0.61 +1.0 71,223 - GFF61 0.61 -0.3 71,223 - GFF61 0.61 -1.4 71,223 - GFF61 0.61 -0.3 71,229 - GFF61 0.62 -1.4 71,245 + GFF61 0.65 -1.6 71,245 + GFF61 0.65 -2.2 71,320 - GFF61 0.77 -0.5 71,320 - GFF61 0.77 -1.2 71,393 + GFF61 0.88 -0.4 71,393 + GFF61 0.88 -0.6 71,394 - GFF61 0.89 +0.4 71,546 - +0.7 71,547 + -2.2 71,548 - +0.6 71,548 - +0.1 71,609 + -2.5 71,609 + -1.4 71,609 + -1.0 71,609 + -1.6 71,609 + +1.0 71,610 - +0.2 71,610 - -1.2 71,610 - -1.6 71,610 - -0.0 71,610 - -0.4 71,812 + GFF62 0.29 -1.4 71,812 + GFF62 0.29 -1.4 71,813 - GFF62 0.29 -1.0 71,824 + GFF62 0.30 -0.4 71,825 - GFF62 0.30 -0.4 71,825 - GFF62 0.30 +0.6 71,825 - GFF62 0.30 +0.1 71,825 - GFF62 0.30 +1.0 71,837 + GFF62 0.32 +0.7 71,915 + GFF62 0.41 -1.5 71,916 - GFF62 0.41 -0.8 71,916 - GFF62 0.41 +0.7 71,941 + GFF62 0.44 -3.1 71,942 - GFF62 0.44 -0.4 71,992 + GFF62 0.51 -0.7 71,992 + GFF62 0.51 +0.2 71,992 + GFF62 0.51 -1.6 71,992 + GFF62 0.51 +0.6 71,993 - GFF62 0.51 -0.1 72,036 + GFF62 0.56 +0.3 72,089 + GFF62 0.62 -0.3 72,093 + GFF62 0.63 -0.6 72,093 + GFF62 0.63 +0.4 72,093 + GFF62 0.63 -0.9 72,094 - GFF62 0.63 -0.6 72,179 + GFF62 0.74 +0.1 72,180 - GFF62 0.74 +0.2 72,180 - GFF62 0.74 +0.6 72,236 + GFF62 0.81 -1.0 72,236 + GFF62 0.81 -2.0 72,237 - GFF62 0.81 -1.1 72,237 - GFF62 0.81 +0.1 72,240 + GFF62 0.81 +0.7 72,253 - GFF62 0.83 -1.3 72,268 + GFF62 0.84 -1.0 72,268 + GFF62 0.84 -0.5 72,269 - GFF62 0.85 -1.2 72,269 - GFF62 0.85 -0.4 72,269 - GFF62 0.85 -0.0 72,367 + -0.0
Or see this region's nucleotide sequence