Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF586 and GFF587 are separated by 147 nucleotides GFF587 and GFF588 are separated by 31 nucleotides
GFF586 - ATP-dependent DNA helicase Rep, at 644,930 to 646,954
GFF586
GFF587 - hypothetical protein, at 647,102 to 648,367
GFF587
GFF588 - Ribosome biogenesis GTPase A, at 648,399 to 649,334
GFF588
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 646.967 kb on - strand at 647.014 kb on + strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.015 kb on - strand at 647.023 kb on - strand at 647.023 kb on - strand at 647.023 kb on - strand at 647.032 kb on - strand at 647.049 kb on - strand at 647.049 kb on - strand at 647.049 kb on - strand at 647.049 kb on - strand at 647.049 kb on - strand at 647.051 kb on - strand at 647.051 kb on - strand at 647.051 kb on - strand at 647.059 kb on - strand at 647.059 kb on - strand at 647.059 kb on - strand at 647.059 kb on - strand at 647.059 kb on - strand at 647.059 kb on - strand at 647.059 kb on - strand at 647.073 kb on - strand at 647.073 kb on - strand at 647.073 kb on - strand at 647.073 kb on - strand at 647.073 kb on - strand at 647.073 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.076 kb on - strand at 647.098 kb on - strand at 647.129 kb on - strand at 647.139 kb on + strand at 647.139 kb on + strand at 647.139 kb on + strand at 647.139 kb on + strand at 647.139 kb on + strand at 647.139 kb on + strand at 647.140 kb on - strand at 647.140 kb on - strand at 647.265 kb on - strand, within GFF587 at 647.282 kb on - strand, within GFF587 at 647.305 kb on + strand, within GFF587 at 647.305 kb on + strand, within GFF587 at 647.305 kb on + strand, within GFF587 at 647.306 kb on - strand, within GFF587 at 647.306 kb on - strand, within GFF587 at 647.306 kb on - strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.309 kb on + strand, within GFF587 at 647.310 kb on - strand, within GFF587 at 647.310 kb on - strand, within GFF587 at 647.310 kb on - strand, within GFF587 at 647.312 kb on - strand, within GFF587 at 647.419 kb on + strand, within GFF587 at 647.419 kb on + strand, within GFF587 at 647.461 kb on + strand, within GFF587 at 647.461 kb on + strand, within GFF587 at 647.461 kb on + strand, within GFF587 at 647.481 kb on + strand, within GFF587 at 647.482 kb on - strand, within GFF587 at 647.488 kb on + strand, within GFF587 at 647.512 kb on - strand, within GFF587 at 647.536 kb on - strand, within GFF587 at 647.567 kb on - strand, within GFF587 at 647.584 kb on + strand, within GFF587 at 647.584 kb on + strand, within GFF587 at 647.691 kb on - strand, within GFF587 at 647.691 kb on - strand, within GFF587 at 647.910 kb on - strand, within GFF587 at 647.914 kb on + strand, within GFF587 at 647.933 kb on + strand, within GFF587 at 647.934 kb on - strand, within GFF587 at 647.962 kb on + strand, within GFF587 at 647.962 kb on + strand, within GFF587 at 647.962 kb on + strand, within GFF587 at 647.962 kb on + strand, within GFF587 at 647.962 kb on + strand, within GFF587 at 647.962 kb on + strand, within GFF587 at 647.963 kb on - strand, within GFF587 at 647.963 kb on - strand, within GFF587 at 647.963 kb on - strand, within GFF587 at 647.963 kb on - strand, within GFF587 at 647.963 kb on - strand, within GFF587 at 647.982 kb on + strand, within GFF587 at 647.982 kb on + strand, within GFF587 at 647.982 kb on + strand, within GFF587 at 647.982 kb on + strand, within GFF587 at 647.982 kb on + strand, within GFF587 at 647.983 kb on - strand, within GFF587 at 647.983 kb on - strand, within GFF587 at 647.983 kb on - strand, within GFF587 at 648.172 kb on + strand, within GFF587 at 648.172 kb on + strand, within GFF587 at 648.173 kb on - strand, within GFF587 at 648.173 kb on - strand, within GFF587 at 648.212 kb on + strand, within GFF587 at 648.212 kb on + strand, within GFF587 at 648.213 kb on - strand, within GFF587 at 648.213 kb on - strand, within GFF587 at 648.213 kb on - strand, within GFF587 at 648.283 kb on + strand at 648.284 kb on - strand at 648.295 kb on + strand at 648.295 kb on + strand at 648.295 kb on + strand at 648.295 kb on + strand at 648.296 kb on - strand at 648.297 kb on + strand at 648.297 kb on + strand at 648.297 kb on + strand at 648.297 kb on + strand at 648.298 kb on - strand at 648.298 kb on - strand at 648.298 kb on - strand at 648.298 kb on - strand at 648.313 kb on + strand at 648.313 kb on + strand at 648.313 kb on + strand at 648.314 kb on - strand at 648.314 kb on - strand at 648.314 kb on - strand at 648.314 kb on - strand at 648.314 kb on - strand at 648.314 kb on - strand at 648.366 kb on - strand at 648.366 kb on - strand at 648.393 kb on + strand at 648.394 kb on - strand at 648.394 kb on - strand at 648.394 kb on - strand at 648.394 kb on - strand at 648.400 kb on + strand at 648.427 kb on - strand at 648.447 kb on - strand at 648.447 kb on - strand at 648.447 kb on - strand at 649.352 kb on - strand at 649.352 kb on - strand at 649.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 646,967 - -1.1 647,014 + -0.9 647,015 - -0.7 647,015 - -1.7 647,015 - -1.4 647,015 - -0.6 647,015 - -0.5 647,015 - -0.7 647,015 - -0.1 647,015 - -1.1 647,015 - -1.4 647,015 - -1.6 647,023 - +0.1 647,023 - -0.1 647,023 - -1.9 647,032 - -0.4 647,049 - +0.1 647,049 - -0.3 647,049 - -0.7 647,049 - +0.9 647,049 - +0.3 647,051 - -0.1 647,051 - +0.7 647,051 - -0.3 647,059 - -0.4 647,059 - +0.4 647,059 - -0.1 647,059 - -1.4 647,059 - -0.4 647,059 - -2.8 647,059 - +0.1 647,073 - -0.4 647,073 - -1.1 647,073 - -0.8 647,073 - -0.2 647,073 - -1.1 647,073 - -0.8 647,076 - +0.5 647,076 - -1.0 647,076 - -0.1 647,076 - -0.7 647,076 - +0.5 647,076 - +0.6 647,076 - -0.5 647,076 - -0.7 647,076 - +0.0 647,076 - -1.0 647,076 - +0.1 647,076 - -0.4 647,098 - -0.3 647,129 - +0.2 647,139 + -0.5 647,139 + -0.4 647,139 + -1.6 647,139 + +0.5 647,139 + -0.1 647,139 + +0.4 647,140 - -0.1 647,140 - -0.9 647,265 - GFF587 0.13 +1.1 647,282 - GFF587 0.14 -1.1 647,305 + GFF587 0.16 -0.1 647,305 + GFF587 0.16 -0.0 647,305 + GFF587 0.16 -0.5 647,306 - GFF587 0.16 -1.2 647,306 - GFF587 0.16 -0.5 647,306 - GFF587 0.16 -0.7 647,309 + GFF587 0.16 +0.5 647,309 + GFF587 0.16 -1.4 647,309 + GFF587 0.16 +0.9 647,309 + GFF587 0.16 -0.7 647,309 + GFF587 0.16 +0.6 647,309 + GFF587 0.16 -0.1 647,309 + GFF587 0.16 -0.1 647,309 + GFF587 0.16 -2.1 647,309 + GFF587 0.16 -0.4 647,310 - GFF587 0.16 +0.5 647,310 - GFF587 0.16 -0.8 647,310 - GFF587 0.16 -1.3 647,312 - GFF587 0.17 -1.1 647,419 + GFF587 0.25 -0.7 647,419 + GFF587 0.25 +0.7 647,461 + GFF587 0.28 -0.4 647,461 + GFF587 0.28 -0.1 647,461 + GFF587 0.28 -1.4 647,481 + GFF587 0.30 -0.4 647,482 - GFF587 0.30 -0.3 647,488 + GFF587 0.30 -1.7 647,512 - GFF587 0.32 +1.5 647,536 - GFF587 0.34 -0.0 647,567 - GFF587 0.37 -2.3 647,584 + GFF587 0.38 -0.7 647,584 + GFF587 0.38 +0.1 647,691 - GFF587 0.47 -0.7 647,691 - GFF587 0.47 -0.6 647,910 - GFF587 0.64 -1.4 647,914 + GFF587 0.64 -0.1 647,933 + GFF587 0.66 -1.4 647,934 - GFF587 0.66 +0.5 647,962 + GFF587 0.68 +0.7 647,962 + GFF587 0.68 -0.7 647,962 + GFF587 0.68 -0.6 647,962 + GFF587 0.68 -1.0 647,962 + GFF587 0.68 -1.9 647,962 + GFF587 0.68 +0.6 647,963 - GFF587 0.68 +0.2 647,963 - GFF587 0.68 -0.7 647,963 - GFF587 0.68 -0.3 647,963 - GFF587 0.68 -0.7 647,963 - GFF587 0.68 +0.7 647,982 + GFF587 0.70 -0.9 647,982 + GFF587 0.70 +0.4 647,982 + GFF587 0.70 -1.7 647,982 + GFF587 0.70 +0.1 647,982 + GFF587 0.70 -0.7 647,983 - GFF587 0.70 -0.4 647,983 - GFF587 0.70 -1.1 647,983 - GFF587 0.70 -1.1 648,172 + GFF587 0.85 +0.2 648,172 + GFF587 0.85 +0.9 648,173 - GFF587 0.85 +0.1 648,173 - GFF587 0.85 -0.4 648,212 + GFF587 0.88 -0.8 648,212 + GFF587 0.88 -0.8 648,213 - GFF587 0.88 -1.4 648,213 - GFF587 0.88 -0.4 648,213 - GFF587 0.88 +0.2 648,283 + -1.7 648,284 - -1.4 648,295 + -1.0 648,295 + -0.6 648,295 + +1.7 648,295 + -1.4 648,296 - -0.6 648,297 + -1.0 648,297 + +0.6 648,297 + -0.9 648,297 + -1.4 648,298 - +0.4 648,298 - -0.8 648,298 - +0.0 648,298 - -0.6 648,313 + +0.6 648,313 + -1.4 648,313 + -1.4 648,314 - -0.6 648,314 - -1.1 648,314 - -0.3 648,314 - +1.1 648,314 - -0.6 648,314 - +0.5 648,366 - -0.1 648,366 - -0.1 648,393 + -1.7 648,394 - -0.2 648,394 - -0.1 648,394 - -2.1 648,394 - -0.4 648,400 + +0.0 648,427 - -1.0 648,447 - -0.6 648,447 - -1.4 648,447 - -0.4 649,352 - -1.3 649,352 - -0.9 649,352 - +1.0
Or see this region's nucleotide sequence