Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF531 and GFF532 are separated by 73 nucleotides GFF532 and GFF533 are separated by 30 nucleotides
GFF531 - Flagellin, at 589,372 to 590,172
GFF531
GFF532 - hypothetical protein, at 590,246 to 590,593
GFF532
GFF533 - hypothetical protein, at 590,624 to 592,312
GFF533
Position (kb) 590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 589.262 kb on - strand at 589.262 kb on - strand at 589.268 kb on - strand at 589.270 kb on + strand at 589.294 kb on + strand at 589.294 kb on + strand at 589.318 kb on + strand at 589.318 kb on + strand at 589.347 kb on + strand at 589.347 kb on + strand at 589.349 kb on + strand at 589.349 kb on + strand at 589.349 kb on + strand at 589.349 kb on + strand at 589.349 kb on + strand at 589.349 kb on + strand at 589.349 kb on + strand at 589.349 kb on + strand at 589.350 kb on - strand at 589.350 kb on - strand at 589.350 kb on - strand at 589.350 kb on - strand at 589.350 kb on - strand at 589.368 kb on + strand at 589.386 kb on + strand at 589.387 kb on - strand at 589.387 kb on - strand at 589.387 kb on - strand at 589.387 kb on - strand at 589.387 kb on - strand at 589.552 kb on - strand, within GFF531 at 589.661 kb on + strand, within GFF531 at 589.681 kb on + strand, within GFF531 at 589.719 kb on + strand, within GFF531 at 589.719 kb on + strand, within GFF531 at 589.720 kb on - strand, within GFF531 at 589.753 kb on - strand, within GFF531 at 589.753 kb on - strand, within GFF531 at 589.830 kb on + strand, within GFF531 at 589.830 kb on + strand, within GFF531 at 589.863 kb on + strand, within GFF531 at 589.863 kb on + strand, within GFF531 at 589.863 kb on + strand, within GFF531 at 589.864 kb on - strand, within GFF531 at 589.864 kb on - strand, within GFF531 at 589.864 kb on - strand, within GFF531 at 589.864 kb on - strand, within GFF531 at 589.864 kb on - strand, within GFF531 at 589.866 kb on + strand, within GFF531 at 590.193 kb on + strand at 590.194 kb on - strand at 590.194 kb on - strand at 590.257 kb on + strand at 590.257 kb on + strand at 590.258 kb on - strand at 590.258 kb on - strand at 590.286 kb on + strand, within GFF532 at 590.304 kb on + strand, within GFF532 at 590.308 kb on + strand, within GFF532 at 590.308 kb on + strand, within GFF532 at 590.308 kb on + strand, within GFF532 at 590.308 kb on + strand, within GFF532 at 590.309 kb on - strand, within GFF532 at 590.309 kb on - strand, within GFF532 at 590.309 kb on - strand, within GFF532 at 590.309 kb on - strand, within GFF532 at 590.327 kb on + strand, within GFF532 at 590.327 kb on + strand, within GFF532 at 590.327 kb on + strand, within GFF532 at 590.328 kb on - strand, within GFF532 at 590.328 kb on - strand, within GFF532 at 590.411 kb on + strand, within GFF532 at 590.411 kb on + strand, within GFF532 at 590.411 kb on + strand, within GFF532 at 590.411 kb on + strand, within GFF532 at 590.411 kb on + strand, within GFF532 at 590.412 kb on - strand, within GFF532 at 590.412 kb on - strand, within GFF532 at 590.436 kb on + strand, within GFF532 at 590.542 kb on + strand, within GFF532 at 590.543 kb on - strand, within GFF532 at 590.562 kb on + strand at 590.563 kb on - strand at 590.563 kb on - strand at 590.607 kb on + strand at 590.608 kb on - strand at 590.608 kb on - strand at 590.608 kb on - strand at 590.618 kb on + strand at 590.619 kb on - strand at 590.619 kb on - strand at 590.619 kb on - strand at 590.623 kb on + strand at 590.624 kb on - strand at 590.624 kb on - strand at 590.637 kb on + strand at 590.661 kb on + strand at 590.661 kb on + strand at 590.665 kb on + strand at 590.665 kb on + strand at 590.665 kb on + strand at 590.666 kb on - strand at 590.666 kb on - strand at 590.737 kb on + strand at 590.741 kb on + strand at 590.741 kb on + strand at 590.741 kb on + strand at 590.741 kb on + strand at 590.742 kb on - strand at 590.742 kb on - strand at 590.742 kb on - strand at 590.742 kb on - strand at 590.742 kb on - strand at 590.762 kb on + strand at 590.762 kb on + strand at 590.763 kb on - strand at 590.767 kb on + strand at 590.768 kb on - strand at 590.788 kb on + strand at 590.870 kb on - strand, within GFF533 at 590.896 kb on + strand, within GFF533 at 590.947 kb on + strand, within GFF533 at 590.947 kb on + strand, within GFF533 at 590.947 kb on + strand, within GFF533 at 590.948 kb on - strand, within GFF533 at 590.948 kb on - strand, within GFF533 at 590.950 kb on + strand, within GFF533 at 590.950 kb on + strand, within GFF533 at 590.950 kb on + strand, within GFF533 at 590.950 kb on + strand, within GFF533 at 590.951 kb on - strand, within GFF533 at 590.951 kb on - strand, within GFF533 at 590.963 kb on + strand, within GFF533 at 590.963 kb on + strand, within GFF533 at 590.963 kb on + strand, within GFF533 at 590.963 kb on + strand, within GFF533 at 590.964 kb on - strand, within GFF533 at 591.016 kb on + strand, within GFF533 at 591.016 kb on + strand, within GFF533 at 591.016 kb on + strand, within GFF533 at 591.017 kb on - strand, within GFF533 at 591.017 kb on - strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.020 kb on + strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.021 kb on - strand, within GFF533 at 591.038 kb on - strand, within GFF533 at 591.064 kb on + strand, within GFF533 at 591.064 kb on + strand, within GFF533 at 591.065 kb on - strand, within GFF533 at 591.082 kb on + strand, within GFF533 at 591.083 kb on - strand, within GFF533 at 591.100 kb on + strand, within GFF533 at 591.100 kb on + strand, within GFF533 at 591.109 kb on + strand, within GFF533 at 591.166 kb on + strand, within GFF533 at 591.166 kb on + strand, within GFF533 at 591.166 kb on + strand, within GFF533 at 591.166 kb on + strand, within GFF533 at 591.167 kb on - strand, within GFF533 at 591.167 kb on - strand, within GFF533 at 591.188 kb on - strand, within GFF533 at 591.229 kb on + strand, within GFF533 at 591.229 kb on + strand, within GFF533 at 591.299 kb on + strand, within GFF533 at 591.336 kb on + strand, within GFF533 at 591.337 kb on - strand, within GFF533 at 591.413 kb on - strand, within GFF533 at 591.413 kb on - strand, within GFF533 at 591.438 kb on + strand, within GFF533 at 591.494 kb on - strand, within GFF533 at 591.503 kb on - strand, within GFF533 at 591.513 kb on + strand, within GFF533 at 591.533 kb on + strand, within GFF533 at 591.533 kb on + strand, within GFF533 at 591.534 kb on - strand, within GFF533 at 591.534 kb on - strand, within GFF533 at 591.547 kb on + strand, within GFF533
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 589,262 - +0.3 589,262 - -0.7 589,268 - -1.1 589,270 + -1.0 589,294 + -1.1 589,294 + -1.4 589,318 + +0.2 589,318 + -0.7 589,347 + +0.1 589,347 + -1.7 589,349 + -2.0 589,349 + -0.1 589,349 + -1.1 589,349 + -1.7 589,349 + -0.5 589,349 + -0.2 589,349 + -0.4 589,349 + -0.9 589,350 - +0.3 589,350 - -0.1 589,350 - +0.7 589,350 - -0.2 589,350 - -0.5 589,368 + -1.4 589,386 + +0.7 589,387 - +0.6 589,387 - -1.1 589,387 - -1.0 589,387 - -0.7 589,387 - +0.1 589,552 - GFF531 0.22 -0.0 589,661 + GFF531 0.36 +0.2 589,681 + GFF531 0.39 +0.9 589,719 + GFF531 0.43 -0.9 589,719 + GFF531 0.43 -0.3 589,720 - GFF531 0.43 -0.4 589,753 - GFF531 0.48 +0.5 589,753 - GFF531 0.48 -0.7 589,830 + GFF531 0.57 -0.2 589,830 + GFF531 0.57 -1.8 589,863 + GFF531 0.61 -0.7 589,863 + GFF531 0.61 -1.2 589,863 + GFF531 0.61 +0.1 589,864 - GFF531 0.61 -1.7 589,864 - GFF531 0.61 -0.4 589,864 - GFF531 0.61 -1.3 589,864 - GFF531 0.61 -1.0 589,864 - GFF531 0.61 -0.4 589,866 + GFF531 0.62 -0.7 590,193 + -0.8 590,194 - -1.0 590,194 - -1.4 590,257 + +0.5 590,257 + -0.7 590,258 - -1.7 590,258 - -0.5 590,286 + GFF532 0.11 +0.9 590,304 + GFF532 0.17 -1.5 590,308 + GFF532 0.18 +0.4 590,308 + GFF532 0.18 -0.4 590,308 + GFF532 0.18 -0.9 590,308 + GFF532 0.18 -1.8 590,309 - GFF532 0.18 -0.1 590,309 - GFF532 0.18 -2.4 590,309 - GFF532 0.18 +0.3 590,309 - GFF532 0.18 +1.5 590,327 + GFF532 0.23 -0.1 590,327 + GFF532 0.23 -0.2 590,327 + GFF532 0.23 +0.5 590,328 - GFF532 0.24 -0.9 590,328 - GFF532 0.24 -0.1 590,411 + GFF532 0.47 -1.2 590,411 + GFF532 0.47 -0.8 590,411 + GFF532 0.47 -1.1 590,411 + GFF532 0.47 -1.7 590,411 + GFF532 0.47 -1.9 590,412 - GFF532 0.48 -2.1 590,412 - GFF532 0.48 -0.9 590,436 + GFF532 0.55 -1.4 590,542 + GFF532 0.85 +0.4 590,543 - GFF532 0.85 -0.2 590,562 + +0.1 590,563 - -0.1 590,563 - +0.5 590,607 + -0.3 590,608 - -0.3 590,608 - -0.8 590,608 - +0.7 590,618 + +0.5 590,619 - -1.9 590,619 - -1.7 590,619 - +0.0 590,623 + -1.4 590,624 - -0.1 590,624 - -0.4 590,637 + -1.5 590,661 + +0.2 590,661 + -1.9 590,665 + -0.9 590,665 + +0.9 590,665 + -0.8 590,666 - +0.1 590,666 - -2.1 590,737 + +0.4 590,741 + -1.4 590,741 + +0.1 590,741 + +0.5 590,741 + -1.0 590,742 - -1.5 590,742 - -1.4 590,742 - -0.1 590,742 - -0.4 590,742 - +1.7 590,762 + -0.1 590,762 + -0.5 590,763 - -3.1 590,767 + -0.4 590,768 - -0.5 590,788 + +1.0 590,870 - GFF533 0.15 +0.1 590,896 + GFF533 0.16 +1.1 590,947 + GFF533 0.19 -1.3 590,947 + GFF533 0.19 -0.9 590,947 + GFF533 0.19 -0.7 590,948 - GFF533 0.19 -0.7 590,948 - GFF533 0.19 -1.4 590,950 + GFF533 0.19 -1.0 590,950 + GFF533 0.19 +0.4 590,950 + GFF533 0.19 -0.0 590,950 + GFF533 0.19 -1.1 590,951 - GFF533 0.19 -1.3 590,951 - GFF533 0.19 -1.0 590,963 + GFF533 0.20 -1.7 590,963 + GFF533 0.20 -1.0 590,963 + GFF533 0.20 +0.4 590,963 + GFF533 0.20 -1.1 590,964 - GFF533 0.20 +0.2 591,016 + GFF533 0.23 -1.0 591,016 + GFF533 0.23 -2.0 591,016 + GFF533 0.23 -1.4 591,017 - GFF533 0.23 -1.2 591,017 - GFF533 0.23 -1.1 591,020 + GFF533 0.23 -0.0 591,020 + GFF533 0.23 -2.8 591,020 + GFF533 0.23 -0.1 591,020 + GFF533 0.23 -0.1 591,020 + GFF533 0.23 -0.4 591,020 + GFF533 0.23 -0.3 591,020 + GFF533 0.23 -1.7 591,020 + GFF533 0.23 -0.2 591,020 + GFF533 0.23 -1.3 591,020 + GFF533 0.23 +0.6 591,021 - GFF533 0.24 -2.1 591,021 - GFF533 0.24 -1.2 591,021 - GFF533 0.24 -0.6 591,021 - GFF533 0.24 +0.8 591,021 - GFF533 0.24 -2.3 591,021 - GFF533 0.24 -0.2 591,021 - GFF533 0.24 +0.0 591,021 - GFF533 0.24 +0.6 591,038 - GFF533 0.25 -0.1 591,064 + GFF533 0.26 +0.5 591,064 + GFF533 0.26 +0.3 591,065 - GFF533 0.26 -0.4 591,082 + GFF533 0.27 -0.0 591,083 - GFF533 0.27 -0.7 591,100 + GFF533 0.28 -0.6 591,100 + GFF533 0.28 -2.4 591,109 + GFF533 0.29 -0.4 591,166 + GFF533 0.32 +1.1 591,166 + GFF533 0.32 -1.4 591,166 + GFF533 0.32 +0.3 591,166 + GFF533 0.32 -0.6 591,167 - GFF533 0.32 +0.9 591,167 - GFF533 0.32 -1.7 591,188 - GFF533 0.33 +0.1 591,229 + GFF533 0.36 +0.9 591,229 + GFF533 0.36 -0.6 591,299 + GFF533 0.40 -1.7 591,336 + GFF533 0.42 -0.5 591,337 - GFF533 0.42 -0.7 591,413 - GFF533 0.47 +0.2 591,413 - GFF533 0.47 +0.2 591,438 + GFF533 0.48 +1.1 591,494 - GFF533 0.52 -0.4 591,503 - GFF533 0.52 -1.8 591,513 + GFF533 0.53 -0.1 591,533 + GFF533 0.54 -0.3 591,533 + GFF533 0.54 -0.1 591,534 - GFF533 0.54 +1.5 591,534 - GFF533 0.54 +0.2 591,547 + GFF533 0.55 -1.1
Or see this region's nucleotide sequence