Strain Fitness in Methylophilus sp. DMC18 around GFF53

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF52 and GFF53 are separated by 129 nucleotidesGFF53 and GFF54 are separated by 84 nucleotidesGFF54 and GFF55 are separated by 67 nucleotides GFF52 - Hydrazine synthase subunit beta, at 62,006 to 62,962 GFF52 GFF53 - hypothetical protein, at 63,092 to 63,589 GFF53 GFF54 - hypothetical protein, at 63,674 to 64,381 GFF54 GFF55 - hypothetical protein, at 64,449 to 64,886 GFF55 Position (kb) 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 62.196 kb on + strand, within GFF52at 62.203 kb on + strand, within GFF52at 62.203 kb on + strand, within GFF52at 62.203 kb on + strand, within GFF52at 62.203 kb on + strand, within GFF52at 62.203 kb on + strand, within GFF52at 62.204 kb on - strand, within GFF52at 62.219 kb on + strand, within GFF52at 62.256 kb on + strand, within GFF52at 62.256 kb on + strand, within GFF52at 62.256 kb on + strand, within GFF52at 62.256 kb on + strand, within GFF52at 62.321 kb on - strand, within GFF52at 62.600 kb on + strand, within GFF52at 62.600 kb on + strand, within GFF52at 62.600 kb on + strand, within GFF52at 62.600 kb on + strand, within GFF52at 62.601 kb on - strand, within GFF52at 62.601 kb on - strand, within GFF52at 62.669 kb on - strand, within GFF52at 62.726 kb on + strand, within GFF52at 62.726 kb on + strand, within GFF52at 62.727 kb on - strand, within GFF52at 62.731 kb on + strand, within GFF52at 62.821 kb on + strand, within GFF52at 62.822 kb on - strand, within GFF52at 62.842 kb on + strand, within GFF52at 62.852 kb on + strand, within GFF52at 62.852 kb on + strand, within GFF52at 62.875 kb on + strandat 62.875 kb on + strandat 62.875 kb on + strandat 62.876 kb on - strandat 62.915 kb on - strandat 62.920 kb on + strandat 62.982 kb on + strandat 62.982 kb on + strandat 62.983 kb on - strandat 63.018 kb on + strandat 63.024 kb on - strandat 63.043 kb on + strandat 63.057 kb on + strandat 63.057 kb on + strandat 63.134 kb on - strandat 63.174 kb on + strand, within GFF53at 63.175 kb on - strand, within GFF53at 63.226 kb on + strand, within GFF53at 63.226 kb on + strand, within GFF53at 63.226 kb on + strand, within GFF53at 63.226 kb on + strand, within GFF53at 63.226 kb on + strand, within GFF53at 63.227 kb on - strand, within GFF53at 63.227 kb on - strand, within GFF53at 63.227 kb on - strand, within GFF53at 63.272 kb on + strand, within GFF53at 63.272 kb on + strand, within GFF53at 63.272 kb on + strand, within GFF53at 63.287 kb on + strand, within GFF53at 63.288 kb on - strand, within GFF53at 63.318 kb on - strand, within GFF53at 63.355 kb on - strand, within GFF53at 63.355 kb on - strand, within GFF53at 63.357 kb on + strand, within GFF53at 63.357 kb on + strand, within GFF53at 63.358 kb on - strand, within GFF53at 63.368 kb on - strand, within GFF53at 63.372 kb on + strand, within GFF53at 63.372 kb on + strand, within GFF53at 63.373 kb on - strand, within GFF53at 63.373 kb on - strand, within GFF53at 63.419 kb on + strand, within GFF53at 63.433 kb on + strand, within GFF53at 63.433 kb on + strand, within GFF53at 63.434 kb on - strand, within GFF53at 63.434 kb on - strand, within GFF53at 63.517 kb on + strand, within GFF53at 63.517 kb on + strand, within GFF53at 63.517 kb on + strand, within GFF53at 63.517 kb on + strand, within GFF53at 63.517 kb on + strand, within GFF53at 63.517 kb on + strand, within GFF53at 63.518 kb on - strand, within GFF53at 63.518 kb on - strand, within GFF53at 63.518 kb on - strand, within GFF53at 63.518 kb on - strand, within GFF53at 63.518 kb on - strand, within GFF53at 63.539 kb on + strand, within GFF53at 63.540 kb on - strandat 63.602 kb on - strandat 63.607 kb on + strandat 63.608 kb on - strandat 63.608 kb on - strandat 63.675 kb on + strandat 63.675 kb on + strandat 63.675 kb on + strandat 63.675 kb on + strandat 63.675 kb on + strandat 63.675 kb on + strandat 63.676 kb on - strandat 63.676 kb on - strandat 63.694 kb on + strandat 63.694 kb on + strandat 63.695 kb on - strandat 63.696 kb on + strandat 63.696 kb on + strandat 63.696 kb on + strandat 63.697 kb on - strandat 63.697 kb on - strandat 63.697 kb on - strandat 63.724 kb on + strandat 63.725 kb on - strandat 63.728 kb on + strandat 63.729 kb on - strandat 63.729 kb on - strandat 63.753 kb on + strand, within GFF54at 63.753 kb on + strand, within GFF54at 63.754 kb on - strand, within GFF54at 63.754 kb on - strand, within GFF54at 63.754 kb on - strand, within GFF54at 63.773 kb on + strand, within GFF54at 63.773 kb on + strand, within GFF54at 63.778 kb on + strand, within GFF54at 63.779 kb on - strand, within GFF54at 63.799 kb on + strand, within GFF54at 63.799 kb on + strand, within GFF54at 63.799 kb on + strand, within GFF54at 63.799 kb on + strand, within GFF54at 63.799 kb on + strand, within GFF54at 63.800 kb on - strand, within GFF54at 63.800 kb on - strand, within GFF54at 63.800 kb on - strand, within GFF54at 63.800 kb on - strand, within GFF54at 63.801 kb on - strand, within GFF54at 63.807 kb on + strand, within GFF54at 63.807 kb on + strand, within GFF54at 63.807 kb on + strand, within GFF54at 63.808 kb on - strand, within GFF54at 63.814 kb on + strand, within GFF54at 63.815 kb on - strand, within GFF54at 63.815 kb on - strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.816 kb on + strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.817 kb on - strand, within GFF54at 63.871 kb on + strand, within GFF54at 63.871 kb on + strand, within GFF54at 63.872 kb on - strand, within GFF54at 63.872 kb on - strand, within GFF54at 63.883 kb on + strand, within GFF54at 63.883 kb on + strand, within GFF54at 63.883 kb on + strand, within GFF54at 63.884 kb on - strand, within GFF54at 63.884 kb on - strand, within GFF54at 63.956 kb on + strand, within GFF54at 63.956 kb on + strand, within GFF54at 63.956 kb on + strand, within GFF54at 63.957 kb on - strand, within GFF54at 63.957 kb on - strand, within GFF54at 63.957 kb on - strand, within GFF54at 63.957 kb on - strand, within GFF54at 64.100 kb on - strand, within GFF54at 64.108 kb on + strand, within GFF54at 64.108 kb on + strand, within GFF54at 64.112 kb on + strand, within GFF54at 64.112 kb on + strand, within GFF54at 64.112 kb on + strand, within GFF54at 64.113 kb on - strand, within GFF54at 64.113 kb on - strand, within GFF54at 64.113 kb on - strand, within GFF54at 64.113 kb on - strand, within GFF54at 64.113 kb on - strand, within GFF54at 64.113 kb on - strand, within GFF54at 64.120 kb on + strand, within GFF54at 64.120 kb on + strand, within GFF54at 64.120 kb on + strand, within GFF54at 64.121 kb on - strand, within GFF54at 64.122 kb on + strand, within GFF54at 64.123 kb on - strand, within GFF54at 64.129 kb on + strand, within GFF54at 64.129 kb on + strand, within GFF54at 64.129 kb on + strand, within GFF54at 64.129 kb on + strand, within GFF54at 64.130 kb on - strand, within GFF54at 64.133 kb on + strand, within GFF54at 64.133 kb on + strand, within GFF54at 64.133 kb on + strand, within GFF54at 64.133 kb on + strand, within GFF54at 64.133 kb on + strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.134 kb on - strand, within GFF54at 64.154 kb on + strand, within GFF54at 64.154 kb on + strand, within GFF54at 64.154 kb on + strand, within GFF54at 64.155 kb on - strand, within GFF54at 64.155 kb on - strand, within GFF54at 64.157 kb on + strand, within GFF54at 64.157 kb on + strand, within GFF54at 64.157 kb on + strand, within GFF54at 64.181 kb on + strand, within GFF54at 64.229 kb on + strand, within GFF54at 64.278 kb on + strand, within GFF54at 64.298 kb on + strand, within GFF54at 64.298 kb on + strand, within GFF54at 64.299 kb on - strand, within GFF54at 64.299 kb on - strand, within GFF54at 64.299 kb on - strand, within GFF54at 64.299 kb on - strand, within GFF54at 64.302 kb on + strand, within GFF54at 64.302 kb on + strand, within GFF54at 64.302 kb on + strand, within GFF54at 64.302 kb on + strand, within GFF54at 64.302 kb on + strand, within GFF54at 64.302 kb on + strand, within GFF54at 64.303 kb on - strand, within GFF54at 64.303 kb on - strand, within GFF54at 64.303 kb on - strand, within GFF54at 64.303 kb on - strand, within GFF54at 64.303 kb on - strand, within GFF54at 64.303 kb on - strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.304 kb on + strand, within GFF54at 64.305 kb on - strand, within GFF54at 64.305 kb on - strand, within GFF54at 64.305 kb on - strand, within GFF54at 64.305 kb on - strand, within GFF54at 64.305 kb on - strand, within GFF54at 64.305 kb on - strand, within GFF54at 64.305 kb on - strand, within GFF54at 64.324 kb on - strandat 64.342 kb on + strandat 64.383 kb on + strandat 64.383 kb on + strandat 64.383 kb on + strandat 64.383 kb on + strandat 64.418 kb on + strandat 64.418 kb on + strandat 64.426 kb on - strandat 64.450 kb on + strandat 64.451 kb on - strandat 64.486 kb on - strandat 64.488 kb on + strandat 64.489 kb on - strandat 64.514 kb on + strand, within GFF55at 64.514 kb on + strand, within GFF55at 64.514 kb on + strand, within GFF55at 64.563 kb on - strand, within GFF55at 64.563 kb on - strand, within GFF55at 64.588 kb on + strand, within GFF55at 64.588 kb on + strand, within GFF55at 64.588 kb on + strand, within GFF55at 64.588 kb on + strand, within GFF55at 64.589 kb on - strand, within GFF55at 64.589 kb on - strand, within GFF55at 64.589 kb on - strand, within GFF55

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
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62,196 + GFF52 0.20 -0.0
62,203 + GFF52 0.21 -0.6
62,203 + GFF52 0.21 +0.2
62,203 + GFF52 0.21 -2.4
62,203 + GFF52 0.21 -0.4
62,203 + GFF52 0.21 +0.0
62,204 - GFF52 0.21 -1.0
62,219 + GFF52 0.22 -0.1
62,256 + GFF52 0.26 +0.2
62,256 + GFF52 0.26 +0.2
62,256 + GFF52 0.26 +0.2
62,256 + GFF52 0.26 -1.4
62,321 - GFF52 0.33 -0.4
62,600 + GFF52 0.62 -0.2
62,600 + GFF52 0.62 -2.2
62,600 + GFF52 0.62 -0.6
62,600 + GFF52 0.62 -0.6
62,601 - GFF52 0.62 -1.4
62,601 - GFF52 0.62 -1.8
62,669 - GFF52 0.69 -0.4
62,726 + GFF52 0.75 +1.1
62,726 + GFF52 0.75 -1.8
62,727 - GFF52 0.75 -0.6
62,731 + GFF52 0.76 -1.6
62,821 + GFF52 0.85 +0.4
62,822 - GFF52 0.85 -0.0
62,842 + GFF52 0.87 -0.0
62,852 + GFF52 0.88 -2.0
62,852 + GFF52 0.88 -0.6
62,875 + -1.0
62,875 + -1.0
62,875 + +0.4
62,876 - -0.8
62,915 - +0.2
62,920 + +0.3
62,982 + -1.2
62,982 + -1.4
62,983 - -0.4
63,018 + -0.0
63,024 - -0.5
63,043 + +1.0
63,057 + -0.3
63,057 + +0.3
63,134 - -0.2
63,174 + GFF53 0.16 +0.6
63,175 - GFF53 0.17 -1.8
63,226 + GFF53 0.27 -0.3
63,226 + GFF53 0.27 -0.0
63,226 + GFF53 0.27 -0.8
63,226 + GFF53 0.27 +1.0
63,226 + GFF53 0.27 -0.0
63,227 - GFF53 0.27 -0.0
63,227 - GFF53 0.27 -0.9
63,227 - GFF53 0.27 -1.8
63,272 + GFF53 0.36 -0.6
63,272 + GFF53 0.36 -0.3
63,272 + GFF53 0.36 -0.8
63,287 + GFF53 0.39 -0.6
63,288 - GFF53 0.39 +0.2
63,318 - GFF53 0.45 +0.1
63,355 - GFF53 0.53 -0.2
63,355 - GFF53 0.53 -0.0
63,357 + GFF53 0.53 -0.8
63,357 + GFF53 0.53 -0.6
63,358 - GFF53 0.53 -1.0
63,368 - GFF53 0.55 -2.2
63,372 + GFF53 0.56 +1.5
63,372 + GFF53 0.56 +1.4
63,373 - GFF53 0.56 -1.0
63,373 - GFF53 0.56 +0.1
63,419 + GFF53 0.66 -0.3
63,433 + GFF53 0.68 -1.0
63,433 + GFF53 0.68 -1.4
63,434 - GFF53 0.69 -0.0
63,434 - GFF53 0.69 +0.1
63,517 + GFF53 0.85 -0.5
63,517 + GFF53 0.85 -0.6
63,517 + GFF53 0.85 -0.4
63,517 + GFF53 0.85 -1.4
63,517 + GFF53 0.85 +1.0
63,517 + GFF53 0.85 +0.7
63,518 - GFF53 0.86 -0.0
63,518 - GFF53 0.86 -0.4
63,518 - GFF53 0.86 -0.3
63,518 - GFF53 0.86 -1.6
63,518 - GFF53 0.86 +0.5
63,539 + GFF53 0.90 +1.3
63,540 - -0.7
63,602 - -1.4
63,607 + -0.4
63,608 - -0.0
63,608 - -0.8
63,675 + -2.6
63,675 + -0.7
63,675 + -0.8
63,675 + -0.3
63,675 + +0.2
63,675 + -1.4
63,676 - +0.8
63,676 - -0.6
63,694 + +0.4
63,694 + -1.5
63,695 - -0.1
63,696 + +0.7
63,696 + -0.8
63,696 + -1.3
63,697 - -0.5
63,697 - -0.6
63,697 - -0.3
63,724 + -0.2
63,725 - -0.8
63,728 + -0.2
63,729 - -0.8
63,729 - -0.4
63,753 + GFF54 0.11 -0.6
63,753 + GFF54 0.11 +0.8
63,754 - GFF54 0.11 +1.3
63,754 - GFF54 0.11 -0.2
63,754 - GFF54 0.11 -2.7
63,773 + GFF54 0.14 -1.0
63,773 + GFF54 0.14 -0.5
63,778 + GFF54 0.15 -1.0
63,779 - GFF54 0.15 -0.5
63,799 + GFF54 0.18 -1.1
63,799 + GFF54 0.18 -0.4
63,799 + GFF54 0.18 -0.2
63,799 + GFF54 0.18 -1.0
63,799 + GFF54 0.18 -0.6
63,800 - GFF54 0.18 -1.0
63,800 - GFF54 0.18 -1.6
63,800 - GFF54 0.18 +1.0
63,800 - GFF54 0.18 -0.0
63,801 - GFF54 0.18 -0.8
63,807 + GFF54 0.19 -0.0
63,807 + GFF54 0.19 +1.6
63,807 + GFF54 0.19 +0.6
63,808 - GFF54 0.19 -0.4
63,814 + GFF54 0.20 -0.0
63,815 - GFF54 0.20 -1.2
63,815 - GFF54 0.20 -0.5
63,816 + GFF54 0.20 -0.4
63,816 + GFF54 0.20 +1.0
63,816 + GFF54 0.20 -1.2
63,816 + GFF54 0.20 -0.7
63,816 + GFF54 0.20 -0.6
63,816 + GFF54 0.20 -0.4
63,816 + GFF54 0.20 -0.4
63,816 + GFF54 0.20 -1.4
63,817 - GFF54 0.20 -0.1
63,817 - GFF54 0.20 -0.5
63,817 - GFF54 0.20 +0.6
63,817 - GFF54 0.20 -0.8
63,817 - GFF54 0.20 -1.0
63,817 - GFF54 0.20 -1.2
63,817 - GFF54 0.20 -0.3
63,817 - GFF54 0.20 -0.9
63,817 - GFF54 0.20 +0.3
63,817 - GFF54 0.20 -1.2
63,817 - GFF54 0.20 -1.4
63,817 - GFF54 0.20 +0.7
63,871 + GFF54 0.28 -0.4
63,871 + GFF54 0.28 -0.4
63,872 - GFF54 0.28 -0.5
63,872 - GFF54 0.28 -1.0
63,883 + GFF54 0.30 -1.0
63,883 + GFF54 0.30 -0.4
63,883 + GFF54 0.30 -0.6
63,884 - GFF54 0.30 -0.0
63,884 - GFF54 0.30 -1.4
63,956 + GFF54 0.40 -0.7
63,956 + GFF54 0.40 -1.5
63,956 + GFF54 0.40 +0.4
63,957 - GFF54 0.40 -1.1
63,957 - GFF54 0.40 +0.1
63,957 - GFF54 0.40 -1.0
63,957 - GFF54 0.40 +0.4
64,100 - GFF54 0.60 -1.1
64,108 + GFF54 0.61 -0.6
64,108 + GFF54 0.61 +0.1
64,112 + GFF54 0.62 -0.9
64,112 + GFF54 0.62 +0.6
64,112 + GFF54 0.62 -0.4
64,113 - GFF54 0.62 -0.0
64,113 - GFF54 0.62 -0.3
64,113 - GFF54 0.62 -0.9
64,113 - GFF54 0.62 +0.7
64,113 - GFF54 0.62 -1.4
64,113 - GFF54 0.62 -1.4
64,120 + GFF54 0.63 -0.4
64,120 + GFF54 0.63 -1.0
64,120 + GFF54 0.63 -1.1
64,121 - GFF54 0.63 +0.2
64,122 + GFF54 0.63 -1.4
64,123 - GFF54 0.63 -1.4
64,129 + GFF54 0.64 -1.4
64,129 + GFF54 0.64 -1.8
64,129 + GFF54 0.64 +0.2
64,129 + GFF54 0.64 -0.0
64,130 - GFF54 0.64 -0.0
64,133 + GFF54 0.65 -0.8
64,133 + GFF54 0.65 -1.6
64,133 + GFF54 0.65 -0.1
64,133 + GFF54 0.65 -1.0
64,133 + GFF54 0.65 +0.6
64,134 - GFF54 0.65 -2.0
64,134 - GFF54 0.65 -0.0
64,134 - GFF54 0.65 -2.0
64,134 - GFF54 0.65 -1.0
64,134 - GFF54 0.65 -2.4
64,134 - GFF54 0.65 -1.0
64,134 - GFF54 0.65 -1.6
64,134 - GFF54 0.65 -0.5
64,154 + GFF54 0.68 -0.7
64,154 + GFF54 0.68 -0.0
64,154 + GFF54 0.68 +0.6
64,155 - GFF54 0.68 -1.4
64,155 - GFF54 0.68 -0.5
64,157 + GFF54 0.68 -1.6
64,157 + GFF54 0.68 -0.6
64,157 + GFF54 0.68 -1.0
64,181 + GFF54 0.72 +2.0
64,229 + GFF54 0.78 -1.5
64,278 + GFF54 0.85 -1.0
64,298 + GFF54 0.88 -1.7
64,298 + GFF54 0.88 -0.6
64,299 - GFF54 0.88 +0.2
64,299 - GFF54 0.88 +0.3
64,299 - GFF54 0.88 -1.8
64,299 - GFF54 0.88 -1.0
64,302 + GFF54 0.89 -0.6
64,302 + GFF54 0.89 -1.6
64,302 + GFF54 0.89 -0.4
64,302 + GFF54 0.89 -0.6
64,302 + GFF54 0.89 +0.6
64,302 + GFF54 0.89 +0.1
64,303 - GFF54 0.89 +0.5
64,303 - GFF54 0.89 -0.3
64,303 - GFF54 0.89 -1.0
64,303 - GFF54 0.89 -0.9
64,303 - GFF54 0.89 +1.3
64,303 - GFF54 0.89 -0.8
64,304 + GFF54 0.89 +0.3
64,304 + GFF54 0.89 -0.6
64,304 + GFF54 0.89 +0.5
64,304 + GFF54 0.89 -1.4
64,304 + GFF54 0.89 +0.2
64,304 + GFF54 0.89 -0.0
64,304 + GFF54 0.89 -1.4
64,304 + GFF54 0.89 -0.4
64,305 - GFF54 0.89 -0.9
64,305 - GFF54 0.89 -1.0
64,305 - GFF54 0.89 -0.7
64,305 - GFF54 0.89 -0.5
64,305 - GFF54 0.89 -0.5
64,305 - GFF54 0.89 -0.5
64,305 - GFF54 0.89 -0.4
64,324 - -0.0
64,342 + -1.3
64,383 + -1.2
64,383 + -0.3
64,383 + +0.6
64,383 + -0.5
64,418 + +1.0
64,418 + -0.7
64,426 - -2.2
64,450 + -0.8
64,451 - -0.0
64,486 - -0.9
64,488 + -0.6
64,489 - -0.6
64,514 + GFF55 0.15 -0.3
64,514 + GFF55 0.15 -0.7
64,514 + GFF55 0.15 +0.4
64,563 - GFF55 0.26 +0.1
64,563 - GFF55 0.26 -0.0
64,588 + GFF55 0.32 -1.2
64,588 + GFF55 0.32 +0.5
64,588 + GFF55 0.32 -1.8
64,588 + GFF55 0.32 -0.2
64,589 - GFF55 0.32 -1.1
64,589 - GFF55 0.32 -0.2
64,589 - GFF55 0.32 -1.0

Or see this region's nucleotide sequence