Strain Fitness in Methylophilus sp. DMC18 around GFF2074

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
114,196	-				-0.6
114,196	-				-1.5
114,230	-				-0.6
114,230	-				+0.3
114,234	+				+0.6
114,234	+				-0.2
114,254	-				+0.1
114,278	+				-0.9
114,302	+				-0.1
114,305	+				+0.7
114,305	+				-0.9
114,306	-				+0.2
114,320	+				-2.7
114,320	+				+1.4
114,320	+				-1.5
114,321	-				+0.1
114,321	-				-0.0
114,321	-				-0.5
114,321	-				-0.9
114,321	-				-0.3
114,321	-				+0.5
114,321	-				-0.7
114,324	+				-0.4
114,324	+				-1.3
114,324	+				+0.3
114,325	-				-0.6
114,325	-				-1.1
114,355	-				-0.1
114,355	-				-1.2
114,355	-				-0.3
114,372	+				-2.6
114,378	+				-0.9
114,379	-				-1.5
114,379	-				-1.1
114,379	-				-1.3
114,379	-				+0.7
114,379	-				+0.1
114,379	-				+0.5
114,379	-				+0.1
114,382	-				-0.9
114,472	-				+0.5
114,472	-				-1.1
114,486	+				-0.3
114,486	+				-1.5
114,486	+				-0.4
114,486	+				+1.1
114,487	-				-0.9
114,487	-				-0.3
114,487	-				-1.5
114,487	-				-1.3
114,506	-				-1.9
114,532	-				+0.1
114,532	-				+0.2
114,532	-				-0.5
114,532	-				-0.3
114,543	+				-0.6
114,543	+				-0.2
114,544	-				-1.3
114,582	+				-0.9
114,585	+				-0.3
114,586	-				+1.1
114,591	+				+1.7
114,591	+				+0.5
114,591	+				-1.9
114,592	-				-0.6
114,592	-				+2.4
114,606	+				-0.4
114,607	-				+0.1
114,609	+				-1.3
114,618	+				-2.5
114,618	+				+0.7
114,618	+				-2.3
114,618	+				+0.1
114,618	+				-0.2
114,618	+				+0.2
114,619	-				+0.4
114,619	-				-0.1
114,620	+				-1.2
114,620	+				-1.3
114,620	+				-2.1
114,620	+				-1.5
114,620	+				-0.5
114,621	-				-0.4
114,621	-				-0.9
114,621	-				-0.8
114,621	-				+0.1
114,621	-				+0.4
114,621	-				+0.1
114,621	-				-1.1
114,624	+				-1.7
114,624	+				-0.5
114,624	+				+0.7
114,625	-				-0.2
114,625	-				-0.4
114,625	-				-0.9
114,625	-				-0.3
114,625	-				-0.8
114,634	+				-0.3
114,634	+				-0.5
114,634	+				+0.5
114,634	+				+0.1
114,635	-				-0.9
114,635	-				-1.0
114,635	-				-2.1
114,635	-				+1.1
114,635	-				-2.6
114,643	+				-0.9
114,660	+				-0.7
114,660	+				-1.3
114,660	+				+0.7
114,661	-				+0.3
114,661	-				+0.1
114,663	+				-0.4
114,682	+				-1.4
114,682	+				-2.3
114,683	-				+0.1
114,683	-				-1.0
114,691	-		GFF2074	0.10	-0.3
114,696	+		GFF2074	0.10	-1.3
114,697	-		GFF2074	0.10	-2.1
114,736	-		GFF2074	0.11	+0.3
114,750	+		GFF2074	0.12	-1.2
114,751	-		GFF2074	0.12	+0.5
114,751	-		GFF2074	0.12	-0.6
114,754	+		GFF2074	0.12	-0.5
114,754	+		GFF2074	0.12	+0.4
114,769	-		GFF2074	0.12	-0.8
114,773	-		GFF2074	0.12	-0.1
114,773	-		GFF2074	0.12	-2.5
114,786	+		GFF2074	0.13	-1.5
114,786	+		GFF2074	0.13	-0.6
114,786	+		GFF2074	0.13	+0.5
114,786	+		GFF2074	0.13	+0.3
114,786	+		GFF2074	0.13	-0.3
114,787	-		GFF2074	0.13	-0.3
114,819	+		GFF2074	0.14	+0.9
114,819	+		GFF2074	0.14	+0.7
114,820	-		GFF2074	0.14	-2.1
114,820	-		GFF2074	0.14	-0.4
114,840	+		GFF2074	0.14	+0.5
114,840	+		GFF2074	0.14	-0.8
114,840	+		GFF2074	0.14	-0.7
114,841	-		GFF2074	0.14	-1.9
114,841	-		GFF2074	0.14	-1.5
114,841	-		GFF2074	0.14	-0.3
114,841	-		GFF2074	0.14	-0.6
114,849	+		GFF2074	0.14	-0.9
114,877	+		GFF2074	0.15	+0.7
114,877	+		GFF2074	0.15	-1.1
114,877	+		GFF2074	0.15	-0.2
114,877	+		GFF2074	0.15	-0.7
114,892	-		GFF2074	0.16	-2.4
114,892	-		GFF2074	0.16	-0.3
114,894	+		GFF2074	0.16	-0.7
114,894	+		GFF2074	0.16	-1.1
114,895	-		GFF2074	0.16	+0.1
114,898	+		GFF2074	0.16	-1.7
114,898	+		GFF2074	0.16	-1.1
114,898	+		GFF2074	0.16	+0.7
114,898	+		GFF2074	0.16	+0.3
114,899	-		GFF2074	0.16	+0.6
114,899	-		GFF2074	0.16	-1.5
114,899	-		GFF2074	0.16	-0.1
114,899	-		GFF2074	0.16	-0.9
114,899	-		GFF2074	0.16	-0.5
114,899	-		GFF2074	0.16	+0.1
114,899	-		GFF2074	0.16	-1.7
114,899	-		GFF2074	0.16	-0.9
114,899	-		GFF2074	0.16	-1.5
114,903	+		GFF2074	0.16	+0.5
114,903	+		GFF2074	0.16	-0.0
114,903	+		GFF2074	0.16	-0.3
114,903	+		GFF2074	0.16	-0.7
114,903	+		GFF2074	0.16	+0.8
114,903	+		GFF2074	0.16	-1.1
114,903	+		GFF2074	0.16	-0.5
114,903	+		GFF2074	0.16	-0.9
114,904	-		GFF2074	0.16	-1.7
114,904	-		GFF2074	0.16	-0.9
114,904	-		GFF2074	0.16	-0.2
114,904	-		GFF2074	0.16	-0.5
114,904	-		GFF2074	0.16	-1.9
114,904	-		GFF2074	0.16	-0.7
114,905	+		GFF2074	0.16	+0.2
114,905	+		GFF2074	0.16	-0.4
114,905	+		GFF2074	0.16	-0.7
114,906	-		GFF2074	0.16	-0.2
114,906	-		GFF2074	0.16	-0.5
114,911	+		GFF2074	0.16	-0.6
114,911	+		GFF2074	0.16	-1.3
114,911	+		GFF2074	0.16	-0.2
114,911	+		GFF2074	0.16	-0.1
114,911	+		GFF2074	0.16	-1.1
114,911	+		GFF2074	0.16	-1.7
114,911	+		GFF2074	0.16	+0.2
114,911	+		GFF2074	0.16	+0.1
114,911	+		GFF2074	0.16	-0.9
114,911	+		GFF2074	0.16	+0.3
114,911	+		GFF2074	0.16	-2.3
114,911	+		GFF2074	0.16	-1.3
114,911	+		GFF2074	0.16	-1.5
114,911	+		GFF2074	0.16	-0.0
114,912	-		GFF2074	0.16	-0.1
114,912	-		GFF2074	0.16	-0.5
114,912	-		GFF2074	0.16	-1.4
114,912	-		GFF2074	0.16	-1.5
114,912	-		GFF2074	0.16	+0.0
114,912	-		GFF2074	0.16	-1.5
114,912	-		GFF2074	0.16	-1.7
114,912	-		GFF2074	0.16	-0.4
114,912	-		GFF2074	0.16	+1.1
114,912	-		GFF2074	0.16	+1.4
114,912	-		GFF2074	0.16	-0.0
114,913	+		GFF2074	0.16	-1.3
114,913	+		GFF2074	0.16	+1.1
114,913	+		GFF2074	0.16	-0.9
114,914	-		GFF2074	0.16	-0.5
114,914	-		GFF2074	0.16	-0.7
114,914	-		GFF2074	0.16	+0.5
114,914	-		GFF2074	0.16	-0.9
114,914	-		GFF2074	0.16	-2.3
114,914	-		GFF2074	0.16	-1.5
114,914	-		GFF2074	0.16	-0.6
114,914	-		GFF2074	0.16	+0.2
114,954	+		GFF2074	0.17	+0.8
114,955	-		GFF2074	0.17	-2.6
114,964	+		GFF2074	0.18	-2.3
114,964	+		GFF2074	0.18	-0.6
114,964	+		GFF2074	0.18	+0.1
114,964	+		GFF2074	0.18	-0.1
114,964	+		GFF2074	0.18	-0.4
114,964	+		GFF2074	0.18	+0.4
114,964	+		GFF2074	0.18	-0.9
114,965	-		GFF2074	0.18	-0.3
114,965	-		GFF2074	0.18	+0.3
114,965	-		GFF2074	0.18	-1.1
114,965	-		GFF2074	0.18	-0.0
114,965	-		GFF2074	0.18	+0.7
114,965	-		GFF2074	0.18	-1.5
114,965	-		GFF2074	0.18	-0.2
114,965	-		GFF2074	0.18	-0.9
114,965	-		GFF2074	0.18	-2.3
114,965	-		GFF2074	0.18	-1.6
114,965	-		GFF2074	0.18	-0.7
114,969	+		GFF2074	0.18	-1.4
114,970	-		GFF2074	0.18	+0.1
114,988	+		GFF2074	0.18	+0.5
114,989	-		GFF2074	0.18	+0.9
114,999	+		GFF2074	0.19	-0.9
115,000	-		GFF2074	0.19	+1.6
115,000	-		GFF2074	0.19	-0.9
115,006	+		GFF2074	0.19	+0.1
115,007	-		GFF2074	0.19	-1.9
115,022	+		GFF2074	0.19	+0.1
115,023	-		GFF2074	0.19	+0.7
115,023	-		GFF2074	0.19	-1.2
115,041	+		GFF2074	0.20	-1.3
115,041	+		GFF2074	0.20	-1.3
115,042	-		GFF2074	0.20	+0.3
115,047	-		GFF2074	0.20	-0.6
115,047	-		GFF2074	0.20	+1.1
115,047	-		GFF2074	0.20	+1.4
115,050	+		GFF2074	0.20	-0.9
115,050	+		GFF2074	0.20	+0.6
115,050	+		GFF2074	0.20	-1.0
115,050	+		GFF2074	0.20	-0.2
115,050	+		GFF2074	0.20	+0.2
115,050	+		GFF2074	0.20	-1.5
115,062	+		GFF2074	0.20	+0.7
115,122	-		GFF2074	0.22	-1.5
115,122	-		GFF2074	0.22	-0.9
115,122	-		GFF2074	0.22	-0.1
115,145	-		GFF2074	0.23	-0.6
115,145	-		GFF2074	0.23	-0.3
115,145	-		GFF2074	0.23	-1.9
115,159	+		GFF2074	0.23	-2.3
115,160	-		GFF2074	0.23	-0.9
115,207	+		GFF2074	0.24	+0.2
115,208	-		GFF2074	0.24	-0.9
115,238	+		GFF2074	0.25	-1.5
115,238	+		GFF2074	0.25	-0.7
115,238	+		GFF2074	0.25	+0.7
115,238	+		GFF2074	0.25	-0.8
115,238	+		GFF2074	0.25	+0.2
115,239	-		GFF2074	0.25	+0.3
115,239	-		GFF2074	0.25	-1.3
115,239	-		GFF2074	0.25	-1.5
115,239	-		GFF2074	0.25	-1.2
115,239	-		GFF2074	0.25	+0.1
115,239	-		GFF2074	0.25	-0.5
115,239	-		GFF2074	0.25	-0.7
115,239	-		GFF2074	0.25	-1.1
115,239	-		GFF2074	0.25	-0.9
115,239	-		GFF2074	0.25	-0.9
115,245	+		GFF2074	0.25	-0.3
115,246	-		GFF2074	0.25	-0.8
115,250	+		GFF2074	0.25	-1.4
115,250	+		GFF2074	0.25	-1.9
115,250	+		GFF2074	0.25	-0.3
115,250	+		GFF2074	0.25	-0.7
115,251	-		GFF2074	0.25	-0.9
115,258	-		GFF2074	0.26	+1.4
115,316	+		GFF2074	0.27	-0.5
115,335	+		GFF2074	0.28	+0.7
115,335	+		GFF2074	0.28	-1.1
115,359	+		GFF2074	0.28	+0.3
115,366	-		GFF2074	0.29	-0.3
115,378	+		GFF2074	0.29	-0.3
115,378	+		GFF2074	0.29	-0.7
115,378	+		GFF2074	0.29	+0.1
115,379	-		GFF2074	0.29	-0.9
115,379	-		GFF2074	0.29	-0.9
115,379	-		GFF2074	0.29	+0.1
115,392	+		GFF2074	0.29	-0.9
115,392	+		GFF2074	0.29	-1.9
115,392	+		GFF2074	0.29	+0.3
115,392	+		GFF2074	0.29	+0.5
115,392	+		GFF2074	0.29	-0.7
115,393	-		GFF2074	0.29	-0.5
115,393	-		GFF2074	0.29	-0.9
115,393	-		GFF2074	0.29	-1.9
115,393	-		GFF2074	0.29	-0.7
115,393	-		GFF2074	0.29	-0.5
115,393	-		GFF2074	0.29	-0.5
115,393	-		GFF2074	0.29	-0.3
115,393	-		GFF2074	0.29	-0.1
115,396	+		GFF2074	0.29	-0.4
115,396	+		GFF2074	0.29	-2.5
115,396	+		GFF2074	0.29	-0.9
115,419	+		GFF2074	0.30	-1.9
115,420	-		GFF2074	0.30	-1.0
115,420	-		GFF2074	0.30	-0.3
115,420	-		GFF2074	0.30	-0.9
115,422	+		GFF2074	0.30	+0.1
115,422	+		GFF2074	0.30	-0.6
115,422	+		GFF2074	0.30	+0.1
115,423	-		GFF2074	0.30	-1.1
115,423	-		GFF2074	0.30	+0.1
115,423	-		GFF2074	0.30	+0.1
115,446	+		GFF2074	0.31	-1.4
115,446	+		GFF2074	0.31	-1.2
115,447	-		GFF2074	0.31	-0.9
115,447	-		GFF2074	0.31	-1.3
115,447	-		GFF2074	0.31	+0.2
115,447	-		GFF2074	0.31	-1.9
115,447	-		GFF2074	0.31	-0.9
115,447	-		GFF2074	0.31	-0.3
115,447	-		GFF2074	0.31	-0.3
115,447	-		GFF2074	0.31	+1.7
115,447	-		GFF2074	0.31	-0.5
115,453	-		GFF2074	0.31	+0.5
115,453	-		GFF2074	0.31	-0.8
115,506	+		GFF2074	0.32	-0.3
115,506	+		GFF2074	0.32	-0.8
115,519	-		GFF2074	0.33	+0.1
115,528	-		GFF2074	0.33	-1.7
115,567	-		GFF2074	0.34	-1.6
115,593	+		GFF2074	0.35	-1.3
115,593	+		GFF2074	0.35	+0.3
115,593	+		GFF2074	0.35	-0.3
115,593	+		GFF2074	0.35	-1.1
115,593	+		GFF2074	0.35	-1.7
115,593	+		GFF2074	0.35	-0.4
115,594	-		GFF2074	0.35	+0.3
115,599	+		GFF2074	0.35	-0.0
115,600	-		GFF2074	0.35	-0.6
115,600	-		GFF2074	0.35	-1.6
115,600	-		GFF2074	0.35	-0.9
115,662	+		GFF2074	0.37	-1.1
115,662	+		GFF2074	0.37	-0.9
115,662	+		GFF2074	0.37	+0.1
115,662	+		GFF2074	0.37	-0.4
115,662	+		GFF2074	0.37	-1.9
115,662	+		GFF2074	0.37	-1.5
115,662	+		GFF2074	0.37	-1.0
115,662	+		GFF2074	0.37	+0.1
115,663	-		GFF2074	0.37	-0.7
115,663	-		GFF2074	0.37	+1.1
115,663	-		GFF2074	0.37	-1.1
115,663	-		GFF2074	0.37	+1.1
115,663	-		GFF2074	0.37	-1.6
115,666	+		GFF2074	0.37	-0.5
115,666	+		GFF2074	0.37	-1.9
115,666	+		GFF2074	0.37	-0.9
115,666	+		GFF2074	0.37	-1.3
115,666	+		GFF2074	0.37	-1.2
115,666	+		GFF2074	0.37	-0.3
115,667	-		GFF2074	0.37	-0.3
115,667	-		GFF2074	0.37	-1.5
115,667	-		GFF2074	0.37	+0.6
115,667	-		GFF2074	0.37	-0.3
115,667	-		GFF2074	0.37	-1.3
115,669	-		GFF2074	0.37	-1.5
115,683	+		GFF2074	0.37	-0.9
115,719	+		GFF2074	0.38	-0.5
115,726	-		GFF2074	0.38	-0.7
115,767	+		GFF2074	0.40	-1.5
115,768	-		GFF2074	0.40	-0.7
115,768	-		GFF2074	0.40	+0.8
115,780	-		GFF2074	0.40	-0.3
115,782	+		GFF2074	0.40	-1.5
115,782	+		GFF2074	0.40	+0.3
115,783	-		GFF2074	0.40	-0.5
115,783	-		GFF2074	0.40	+0.8
115,783	-		GFF2074	0.40	+0.7
115,783	-		GFF2074	0.40	-1.9
115,783	-		GFF2074	0.40	-1.4
115,783	-		GFF2074	0.40	-1.5
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