Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2024 and GFF2025 are separated by 4 nucleotides GFF2025 and GFF2026 are separated by 105 nucleotides
GFF2024 - DNA-binding transcriptional regulator NtrC, at 62,642 to 64,033
GFF2024
GFF2025 - hypothetical protein, at 64,038 to 64,712
GFF2025
GFF2026 - hypothetical protein, at 64,818 to 66,173
GFF2026
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 63.159 kb on + strand, within GFF2024 at 63.160 kb on - strand, within GFF2024 at 63.178 kb on + strand, within GFF2024 at 63.218 kb on - strand, within GFF2024 at 63.243 kb on + strand, within GFF2024 at 63.247 kb on - strand, within GFF2024 at 63.247 kb on - strand, within GFF2024 at 63.453 kb on + strand, within GFF2024 at 63.453 kb on + strand, within GFF2024 at 63.453 kb on + strand, within GFF2024 at 63.522 kb on + strand, within GFF2024 at 63.522 kb on + strand, within GFF2024 at 63.574 kb on + strand, within GFF2024 at 63.583 kb on + strand, within GFF2024 at 63.583 kb on + strand, within GFF2024 at 63.584 kb on - strand, within GFF2024 at 63.584 kb on - strand, within GFF2024 at 63.584 kb on - strand, within GFF2024 at 63.664 kb on + strand, within GFF2024 at 63.665 kb on - strand, within GFF2024 at 63.667 kb on + strand, within GFF2024 at 63.667 kb on + strand, within GFF2024 at 63.667 kb on + strand, within GFF2024 at 63.667 kb on + strand, within GFF2024 at 63.668 kb on - strand, within GFF2024 at 63.668 kb on - strand, within GFF2024 at 63.671 kb on + strand, within GFF2024 at 63.672 kb on - strand, within GFF2024 at 63.672 kb on - strand, within GFF2024 at 63.774 kb on + strand, within GFF2024 at 63.774 kb on + strand, within GFF2024 at 63.775 kb on - strand, within GFF2024 at 63.913 kb on + strand at 63.913 kb on + strand at 63.914 kb on - strand at 63.914 kb on - strand at 63.975 kb on + strand at 63.976 kb on - strand at 63.991 kb on + strand at 63.991 kb on + strand at 63.991 kb on + strand at 63.991 kb on + strand at 63.991 kb on + strand at 63.991 kb on + strand at 63.992 kb on - strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 64.017 kb on + strand at 64.040 kb on - strand at 64.040 kb on - strand at 64.040 kb on - strand at 64.047 kb on + strand at 64.048 kb on - strand at 64.048 kb on - strand at 64.048 kb on - strand at 64.097 kb on + strand at 64.097 kb on + strand at 64.097 kb on + strand at 64.097 kb on + strand at 64.097 kb on + strand at 64.098 kb on - strand at 64.098 kb on - strand at 64.098 kb on - strand at 64.100 kb on + strand at 64.101 kb on - strand at 64.137 kb on + strand, within GFF2025 at 64.137 kb on + strand, within GFF2025 at 64.137 kb on + strand, within GFF2025 at 64.138 kb on - strand, within GFF2025 at 64.138 kb on - strand, within GFF2025 at 64.157 kb on + strand, within GFF2025 at 64.157 kb on + strand, within GFF2025 at 64.186 kb on + strand, within GFF2025 at 64.186 kb on + strand, within GFF2025 at 64.187 kb on - strand, within GFF2025 at 64.187 kb on - strand, within GFF2025 at 64.187 kb on - strand, within GFF2025 at 64.191 kb on + strand, within GFF2025 at 64.191 kb on + strand, within GFF2025 at 64.191 kb on + strand, within GFF2025 at 64.191 kb on + strand, within GFF2025 at 64.192 kb on - strand, within GFF2025 at 64.192 kb on - strand, within GFF2025 at 64.192 kb on - strand, within GFF2025 at 64.192 kb on - strand, within GFF2025 at 64.192 kb on - strand, within GFF2025 at 64.192 kb on - strand, within GFF2025 at 64.202 kb on + strand, within GFF2025 at 64.202 kb on + strand, within GFF2025 at 64.203 kb on - strand, within GFF2025 at 64.203 kb on - strand, within GFF2025 at 64.203 kb on - strand, within GFF2025 at 64.203 kb on - strand, within GFF2025 at 64.203 kb on - strand, within GFF2025 at 64.204 kb on + strand, within GFF2025 at 64.204 kb on + strand, within GFF2025 at 64.204 kb on + strand, within GFF2025 at 64.204 kb on + strand, within GFF2025 at 64.204 kb on + strand, within GFF2025 at 64.205 kb on - strand, within GFF2025 at 64.205 kb on - strand, within GFF2025 at 64.205 kb on - strand, within GFF2025 at 64.205 kb on - strand, within GFF2025 at 64.247 kb on - strand, within GFF2025 at 64.247 kb on - strand, within GFF2025 at 64.299 kb on - strand, within GFF2025 at 64.315 kb on - strand, within GFF2025 at 64.315 kb on - strand, within GFF2025 at 64.334 kb on + strand, within GFF2025 at 64.334 kb on + strand, within GFF2025 at 64.334 kb on + strand, within GFF2025 at 64.343 kb on + strand, within GFF2025 at 64.344 kb on - strand, within GFF2025 at 64.344 kb on - strand, within GFF2025 at 64.347 kb on + strand, within GFF2025 at 64.347 kb on + strand, within GFF2025 at 64.348 kb on - strand, within GFF2025 at 64.348 kb on - strand, within GFF2025 at 64.383 kb on + strand, within GFF2025 at 64.383 kb on + strand, within GFF2025 at 64.383 kb on + strand, within GFF2025 at 64.384 kb on - strand, within GFF2025 at 64.384 kb on - strand, within GFF2025 at 64.384 kb on - strand, within GFF2025 at 64.387 kb on + strand, within GFF2025 at 64.387 kb on + strand, within GFF2025 at 64.387 kb on + strand, within GFF2025 at 64.388 kb on - strand, within GFF2025 at 64.388 kb on - strand, within GFF2025 at 64.389 kb on + strand, within GFF2025 at 64.421 kb on + strand, within GFF2025 at 64.428 kb on + strand, within GFF2025 at 64.428 kb on + strand, within GFF2025 at 64.428 kb on + strand, within GFF2025 at 64.441 kb on + strand, within GFF2025 at 64.441 kb on + strand, within GFF2025 at 64.441 kb on + strand, within GFF2025 at 64.441 kb on + strand, within GFF2025 at 64.487 kb on + strand, within GFF2025 at 64.488 kb on - strand, within GFF2025 at 64.488 kb on - strand, within GFF2025 at 64.488 kb on - strand, within GFF2025 at 64.488 kb on - strand, within GFF2025 at 64.495 kb on + strand, within GFF2025 at 64.496 kb on - strand, within GFF2025 at 64.496 kb on - strand, within GFF2025 at 64.496 kb on - strand, within GFF2025 at 64.505 kb on + strand, within GFF2025 at 64.532 kb on + strand, within GFF2025 at 64.532 kb on + strand, within GFF2025 at 64.532 kb on + strand, within GFF2025 at 64.532 kb on + strand, within GFF2025 at 64.533 kb on - strand, within GFF2025 at 64.533 kb on - strand, within GFF2025 at 64.533 kb on - strand, within GFF2025 at 64.545 kb on + strand, within GFF2025 at 64.553 kb on + strand, within GFF2025 at 64.554 kb on - strand, within GFF2025 at 64.554 kb on - strand, within GFF2025 at 64.554 kb on - strand, within GFF2025 at 64.554 kb on - strand, within GFF2025 at 64.554 kb on - strand, within GFF2025 at 64.557 kb on - strand, within GFF2025 at 64.557 kb on - strand, within GFF2025 at 64.557 kb on - strand, within GFF2025 at 64.580 kb on + strand, within GFF2025 at 64.580 kb on + strand, within GFF2025 at 64.580 kb on + strand, within GFF2025 at 64.580 kb on + strand, within GFF2025 at 64.581 kb on - strand, within GFF2025 at 64.581 kb on - strand, within GFF2025 at 64.598 kb on - strand, within GFF2025 at 64.598 kb on - strand, within GFF2025 at 64.611 kb on + strand, within GFF2025 at 64.630 kb on + strand, within GFF2025 at 64.631 kb on - strand, within GFF2025 at 64.653 kb on - strand at 64.653 kb on - strand at 64.689 kb on + strand at 64.703 kb on - strand at 64.712 kb on + strand at 64.713 kb on - strand at 64.716 kb on + strand at 64.716 kb on + strand at 64.716 kb on + strand at 64.716 kb on + strand at 64.716 kb on + strand at 64.716 kb on + strand at 64.716 kb on + strand at 64.717 kb on - strand at 64.717 kb on - strand at 64.717 kb on - strand at 64.717 kb on - strand at 64.726 kb on + strand at 64.726 kb on + strand at 64.726 kb on + strand at 64.726 kb on + strand at 64.727 kb on - strand at 64.727 kb on - strand at 64.727 kb on - strand at 64.730 kb on + strand at 64.730 kb on + strand at 64.731 kb on - strand at 64.741 kb on - strand at 64.741 kb on - strand at 64.743 kb on + strand at 64.744 kb on - strand at 64.750 kb on + strand at 64.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 63,159 + GFF2024 0.37 +0.3 63,160 - GFF2024 0.37 +0.7 63,178 + GFF2024 0.39 -1.5 63,218 - GFF2024 0.41 -2.3 63,243 + GFF2024 0.43 -1.7 63,247 - GFF2024 0.43 -2.1 63,247 - GFF2024 0.43 -0.8 63,453 + GFF2024 0.58 +0.1 63,453 + GFF2024 0.58 -0.9 63,453 + GFF2024 0.58 -1.7 63,522 + GFF2024 0.63 +0.7 63,522 + GFF2024 0.63 -0.9 63,574 + GFF2024 0.67 +0.7 63,583 + GFF2024 0.68 -1.7 63,583 + GFF2024 0.68 -0.3 63,584 - GFF2024 0.68 +0.6 63,584 - GFF2024 0.68 +0.3 63,584 - GFF2024 0.68 +0.1 63,664 + GFF2024 0.73 +1.3 63,665 - GFF2024 0.73 +0.2 63,667 + GFF2024 0.74 -1.3 63,667 + GFF2024 0.74 -0.9 63,667 + GFF2024 0.74 -1.3 63,667 + GFF2024 0.74 -0.9 63,668 - GFF2024 0.74 -2.4 63,668 - GFF2024 0.74 -0.3 63,671 + GFF2024 0.74 -2.4 63,672 - GFF2024 0.74 -0.7 63,672 - GFF2024 0.74 -1.0 63,774 + GFF2024 0.81 -0.3 63,774 + GFF2024 0.81 -0.3 63,775 - GFF2024 0.81 -0.9 63,913 + -0.3 63,913 + -1.6 63,914 - +0.1 63,914 - -1.3 63,975 + +1.1 63,976 - -1.3 63,991 + -2.1 63,991 + -2.3 63,991 + -1.2 63,991 + +0.1 63,991 + -2.3 63,991 + +0.7 63,992 - -1.7 63,997 + -1.3 63,997 + +0.5 63,997 + -0.9 64,017 + -1.3 64,040 - -1.3 64,040 - -0.7 64,040 - -0.9 64,047 + -1.2 64,048 - -0.7 64,048 - -0.3 64,048 - -0.6 64,097 + -1.5 64,097 + +0.1 64,097 + -0.9 64,097 + -0.9 64,097 + +0.7 64,098 - +0.1 64,098 - -0.7 64,098 - -0.9 64,100 + +0.7 64,101 - -0.5 64,137 + GFF2025 0.15 +0.0 64,137 + GFF2025 0.15 -0.9 64,137 + GFF2025 0.15 +0.3 64,138 - GFF2025 0.15 -0.5 64,138 - GFF2025 0.15 -0.3 64,157 + GFF2025 0.18 -0.1 64,157 + GFF2025 0.18 -0.7 64,186 + GFF2025 0.22 +0.3 64,186 + GFF2025 0.22 -2.6 64,187 - GFF2025 0.22 +0.1 64,187 - GFF2025 0.22 -0.5 64,187 - GFF2025 0.22 -2.3 64,191 + GFF2025 0.23 -0.3 64,191 + GFF2025 0.23 +1.1 64,191 + GFF2025 0.23 -0.2 64,191 + GFF2025 0.23 +1.1 64,192 - GFF2025 0.23 -0.9 64,192 - GFF2025 0.23 -0.2 64,192 - GFF2025 0.23 +0.1 64,192 - GFF2025 0.23 -0.7 64,192 - GFF2025 0.23 -0.9 64,192 - GFF2025 0.23 -1.7 64,202 + GFF2025 0.24 -1.5 64,202 + GFF2025 0.24 -1.7 64,203 - GFF2025 0.24 -0.9 64,203 - GFF2025 0.24 -2.6 64,203 - GFF2025 0.24 -1.1 64,203 - GFF2025 0.24 -1.4 64,203 - GFF2025 0.24 +0.3 64,204 + GFF2025 0.25 -0.7 64,204 + GFF2025 0.25 -0.3 64,204 + GFF2025 0.25 -0.3 64,204 + GFF2025 0.25 +0.1 64,204 + GFF2025 0.25 -0.3 64,205 - GFF2025 0.25 -1.9 64,205 - GFF2025 0.25 -0.1 64,205 - GFF2025 0.25 -0.3 64,205 - GFF2025 0.25 -0.9 64,247 - GFF2025 0.31 -1.0 64,247 - GFF2025 0.31 -0.7 64,299 - GFF2025 0.39 -1.3 64,315 - GFF2025 0.41 -1.3 64,315 - GFF2025 0.41 +0.3 64,334 + GFF2025 0.44 -1.6 64,334 + GFF2025 0.44 +0.3 64,334 + GFF2025 0.44 +0.3 64,343 + GFF2025 0.45 -0.5 64,344 - GFF2025 0.45 -0.2 64,344 - GFF2025 0.45 -1.0 64,347 + GFF2025 0.46 +1.7 64,347 + GFF2025 0.46 -0.8 64,348 - GFF2025 0.46 -1.0 64,348 - GFF2025 0.46 +0.3 64,383 + GFF2025 0.51 -0.7 64,383 + GFF2025 0.51 -0.3 64,383 + GFF2025 0.51 +0.7 64,384 - GFF2025 0.51 -1.3 64,384 - GFF2025 0.51 -0.3 64,384 - GFF2025 0.51 -1.3 64,387 + GFF2025 0.52 -0.9 64,387 + GFF2025 0.52 +0.4 64,387 + GFF2025 0.52 -1.7 64,388 - GFF2025 0.52 -0.4 64,388 - GFF2025 0.52 -0.0 64,389 + GFF2025 0.52 +0.3 64,421 + GFF2025 0.57 -0.1 64,428 + GFF2025 0.58 -1.7 64,428 + GFF2025 0.58 +0.9 64,428 + GFF2025 0.58 +0.4 64,441 + GFF2025 0.60 -2.3 64,441 + GFF2025 0.60 -0.7 64,441 + GFF2025 0.60 -1.4 64,441 + GFF2025 0.60 -0.9 64,487 + GFF2025 0.67 -1.0 64,488 - GFF2025 0.67 +1.1 64,488 - GFF2025 0.67 -0.3 64,488 - GFF2025 0.67 -0.9 64,488 - GFF2025 0.67 +0.4 64,495 + GFF2025 0.68 -0.9 64,496 - GFF2025 0.68 +0.5 64,496 - GFF2025 0.68 -1.5 64,496 - GFF2025 0.68 +0.6 64,505 + GFF2025 0.69 -0.2 64,532 + GFF2025 0.73 -1.7 64,532 + GFF2025 0.73 -0.5 64,532 + GFF2025 0.73 +0.1 64,532 + GFF2025 0.73 +0.1 64,533 - GFF2025 0.73 -0.5 64,533 - GFF2025 0.73 -1.0 64,533 - GFF2025 0.73 +1.4 64,545 + GFF2025 0.75 -0.0 64,553 + GFF2025 0.76 -0.5 64,554 - GFF2025 0.76 -1.3 64,554 - GFF2025 0.76 -0.9 64,554 - GFF2025 0.76 -2.3 64,554 - GFF2025 0.76 +0.1 64,554 - GFF2025 0.76 +0.1 64,557 - GFF2025 0.77 -0.2 64,557 - GFF2025 0.77 -0.8 64,557 - GFF2025 0.77 -2.5 64,580 + GFF2025 0.80 -0.6 64,580 + GFF2025 0.80 -0.9 64,580 + GFF2025 0.80 +0.1 64,580 + GFF2025 0.80 -1.3 64,581 - GFF2025 0.80 -0.3 64,581 - GFF2025 0.80 +0.1 64,598 - GFF2025 0.83 -2.5 64,598 - GFF2025 0.83 -1.3 64,611 + GFF2025 0.85 -1.1 64,630 + GFF2025 0.88 -1.5 64,631 - GFF2025 0.88 +0.3 64,653 - -0.9 64,653 - -1.2 64,689 + -1.5 64,703 - +0.6 64,712 + -0.8 64,713 - -0.6 64,716 + -1.1 64,716 + +1.1 64,716 + -0.5 64,716 + -1.1 64,716 + -1.5 64,716 + -0.6 64,716 + -0.6 64,717 - -1.8 64,717 - -0.6 64,717 - -0.4 64,717 - +0.1 64,726 + -0.4 64,726 + -0.2 64,726 + -0.9 64,726 + -1.1 64,727 - -0.3 64,727 - +0.4 64,727 - +0.7 64,730 + -0.5 64,730 + -2.7 64,731 - -0.7 64,741 - -0.4 64,741 - -0.2 64,743 + -1.3 64,744 - +0.5 64,750 + -1.3 64,753 - +1.4
Or see this region's nucleotide sequence