Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1655 and GFF1656 are separated by 29 nucleotides GFF1656 and GFF1657 are separated by 151 nucleotides GFF1657 and GFF1658 are separated by 58 nucleotides
GFF1655 - putative signaling protein, at 288,560 to 290,164
GFF1655
GFF1656 - hypothetical protein, at 290,194 to 290,433
GFF1656
GFF1657 - hypothetical protein, at 290,585 to 290,803
GFF1657
GFF1658 - DNA polymerase I, at 290,862 to 293,627
GFF1658
Position (kb) 290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 289.617 kb on + strand, within GFF1655 at 289.617 kb on + strand, within GFF1655 at 289.618 kb on - strand, within GFF1655 at 289.624 kb on - strand, within GFF1655 at 289.624 kb on - strand, within GFF1655 at 289.624 kb on - strand, within GFF1655 at 289.647 kb on + strand, within GFF1655 at 289.708 kb on + strand, within GFF1655 at 289.708 kb on + strand, within GFF1655 at 289.763 kb on - strand, within GFF1655 at 289.770 kb on + strand, within GFF1655 at 289.771 kb on - strand, within GFF1655 at 289.885 kb on + strand, within GFF1655 at 289.885 kb on + strand, within GFF1655 at 289.885 kb on + strand, within GFF1655 at 289.885 kb on + strand, within GFF1655 at 289.886 kb on - strand, within GFF1655 at 290.032 kb on - strand at 290.038 kb on + strand at 290.038 kb on + strand at 290.038 kb on + strand at 290.038 kb on + strand at 290.039 kb on - strand at 290.039 kb on - strand at 290.039 kb on - strand at 290.041 kb on + strand at 290.041 kb on + strand at 290.041 kb on + strand at 290.041 kb on + strand at 290.042 kb on - strand at 290.042 kb on - strand at 290.042 kb on - strand at 290.042 kb on - strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.048 kb on - strand at 290.065 kb on + strand at 290.066 kb on - strand at 290.092 kb on - strand at 290.092 kb on - strand at 290.117 kb on + strand at 290.117 kb on + strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.162 kb on + strand at 290.162 kb on + strand at 290.162 kb on + strand at 290.163 kb on - strand at 290.163 kb on - strand at 290.163 kb on - strand at 290.169 kb on + strand at 290.169 kb on + strand at 290.170 kb on - strand at 290.178 kb on - strand at 290.256 kb on + strand, within GFF1656 at 290.266 kb on + strand, within GFF1656 at 290.267 kb on - strand, within GFF1656 at 290.267 kb on - strand, within GFF1656 at 290.267 kb on - strand, within GFF1656 at 290.334 kb on + strand, within GFF1656 at 290.335 kb on - strand, within GFF1656 at 290.413 kb on + strand at 290.439 kb on + strand at 290.440 kb on - strand at 290.440 kb on - strand at 290.440 kb on - strand at 290.453 kb on + strand at 290.453 kb on + strand at 290.466 kb on + strand at 290.467 kb on - strand at 290.467 kb on - strand at 290.467 kb on - strand at 290.472 kb on - strand at 290.472 kb on - strand at 290.472 kb on - strand at 290.506 kb on + strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.690 kb on + strand, within GFF1657 at 290.690 kb on + strand, within GFF1657 at 290.727 kb on + strand, within GFF1657 at 290.727 kb on + strand, within GFF1657 at 290.731 kb on + strand, within GFF1657 at 290.731 kb on + strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.775 kb on - strand, within GFF1657 at 290.775 kb on - strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.783 kb on + strand at 290.820 kb on + strand at 290.837 kb on + strand at 290.837 kb on + strand at 290.838 kb on - strand at 290.838 kb on - strand at 290.846 kb on + strand at 290.846 kb on + strand at 290.847 kb on - strand at 290.864 kb on - strand at 290.905 kb on - strand at 290.905 kb on - strand at 290.920 kb on - strand at 291.151 kb on - strand, within GFF1658 at 291.151 kb on - strand, within GFF1658 at 291.209 kb on - strand, within GFF1658
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 289,617 + GFF1655 0.66 +0.7 289,617 + GFF1655 0.66 -0.0 289,618 - GFF1655 0.66 -0.0 289,624 - GFF1655 0.66 -2.6 289,624 - GFF1655 0.66 -0.4 289,624 - GFF1655 0.66 -0.3 289,647 + GFF1655 0.68 -0.7 289,708 + GFF1655 0.72 -0.4 289,708 + GFF1655 0.72 -0.1 289,763 - GFF1655 0.75 -1.0 289,770 + GFF1655 0.75 -0.0 289,771 - GFF1655 0.75 -1.6 289,885 + GFF1655 0.83 +1.0 289,885 + GFF1655 0.83 -1.5 289,885 + GFF1655 0.83 +1.0 289,885 + GFF1655 0.83 -2.5 289,886 - GFF1655 0.83 -0.0 290,032 - -2.0 290,038 + -1.6 290,038 + +0.2 290,038 + +0.6 290,038 + -1.3 290,039 - -0.2 290,039 - +0.4 290,039 - -0.2 290,041 + -2.2 290,041 + +0.7 290,041 + +0.3 290,041 + -0.0 290,042 - -0.6 290,042 - +0.1 290,042 - -0.0 290,042 - -0.4 290,043 + +0.1 290,043 + -0.5 290,043 + -1.1 290,043 + -0.2 290,043 + +0.7 290,043 + -1.1 290,043 + -1.0 290,043 + -1.6 290,043 + -2.6 290,043 + -0.0 290,043 + -1.2 290,043 + -2.2 290,044 - -0.3 290,044 - -1.6 290,044 - -2.0 290,044 - -1.6 290,044 - -0.2 290,044 - -1.3 290,044 - -0.9 290,044 - -0.0 290,044 - -0.7 290,044 - -0.8 290,044 - -0.1 290,044 - -0.6 290,048 - -0.9 290,065 + -0.3 290,066 - -1.0 290,092 - -0.4 290,092 - -0.0 290,117 + +0.1 290,117 + -1.3 290,118 - -0.9 290,118 - -0.3 290,118 - -0.9 290,118 - -0.2 290,118 - -2.0 290,118 - -2.3 290,162 + -0.6 290,162 + -1.0 290,162 + -0.6 290,163 - -0.6 290,163 - -0.6 290,163 - -0.9 290,169 + +1.0 290,169 + +0.2 290,170 - +0.4 290,178 - -0.9 290,256 + GFF1656 0.26 -1.0 290,266 + GFF1656 0.30 -0.0 290,267 - GFF1656 0.30 +0.3 290,267 - GFF1656 0.30 -1.0 290,267 - GFF1656 0.30 -1.0 290,334 + GFF1656 0.58 -0.0 290,335 - GFF1656 0.59 -0.6 290,413 + -0.1 290,439 + -1.2 290,440 - +0.2 290,440 - -2.0 290,440 - -0.7 290,453 + -0.4 290,453 + -0.6 290,466 + -0.2 290,467 - -0.1 290,467 - -2.0 290,467 - +0.1 290,472 - -1.9 290,472 - +0.8 290,472 - -0.7 290,506 + -1.0 290,557 - -0.4 290,557 - -0.6 290,557 - +0.5 290,557 - -1.0 290,557 - -1.2 290,690 + GFF1657 0.48 +0.6 290,690 + GFF1657 0.48 -0.7 290,727 + GFF1657 0.65 +1.3 290,727 + GFF1657 0.65 +0.3 290,731 + GFF1657 0.67 -1.2 290,731 + GFF1657 0.67 -0.7 290,732 - GFF1657 0.67 +0.1 290,732 - GFF1657 0.67 +0.3 290,732 - GFF1657 0.67 -0.6 290,732 - GFF1657 0.67 +1.0 290,774 + GFF1657 0.86 -1.4 290,774 + GFF1657 0.86 -0.0 290,774 + GFF1657 0.86 +0.2 290,774 + GFF1657 0.86 +0.6 290,774 + GFF1657 0.86 -0.4 290,775 - GFF1657 0.87 -0.3 290,775 - GFF1657 0.87 -1.5 290,776 + GFF1657 0.87 -0.7 290,776 + GFF1657 0.87 -0.5 290,776 + GFF1657 0.87 -0.4 290,776 + GFF1657 0.87 -0.0 290,776 + GFF1657 0.87 -0.5 290,777 - GFF1657 0.88 -2.1 290,777 - GFF1657 0.88 -0.2 290,777 - GFF1657 0.88 -1.2 290,777 - GFF1657 0.88 -0.2 290,777 - GFF1657 0.88 -3.2 290,777 - GFF1657 0.88 -1.6 290,777 - GFF1657 0.88 -0.6 290,777 - GFF1657 0.88 -1.0 290,777 - GFF1657 0.88 -0.6 290,777 - GFF1657 0.88 -2.0 290,783 + -1.5 290,820 + -1.7 290,837 + -0.0 290,837 + +0.9 290,838 - +0.3 290,838 - -1.0 290,846 + -1.8 290,846 + -1.0 290,847 - -0.8 290,864 - -0.3 290,905 - -0.8 290,905 - -1.3 290,920 - +0.1 291,151 - GFF1658 0.10 -0.1 291,151 - GFF1658 0.10 +1.3 291,209 - GFF1658 0.13 -1.3
Or see this region's nucleotide sequence