Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1299 and GFF1300 are separated by 42 nucleotides GFF1300 and GFF1301 are separated by 389 nucleotides GFF1301 and GFF1302 are separated by 335 nucleotides
GFF1299 - hypothetical protein, at 559,497 to 560,915
GFF1299
GFF1300 - hypothetical protein, at 560,958 to 561,194
GFF1300
GFF1301 - 2-iminobutanoate/2-iminopropanoate deaminase, at 561,584 to 561,958
GFF1301
GFF1302 - Trigger factor, at 562,294 to 563,604
GFF1302
Position (kb) 561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 560.591 kb on + strand, within GFF1299 at 560.592 kb on - strand, within GFF1299 at 560.599 kb on - strand, within GFF1299 at 560.685 kb on - strand, within GFF1299 at 560.712 kb on + strand, within GFF1299 at 560.712 kb on + strand, within GFF1299 at 560.744 kb on + strand, within GFF1299 at 560.773 kb on - strand, within GFF1299 at 560.773 kb on - strand, within GFF1299 at 560.773 kb on - strand, within GFF1299 at 560.773 kb on - strand, within GFF1299 at 560.826 kb on - strand at 560.883 kb on + strand at 560.959 kb on + strand at 560.959 kb on + strand at 560.960 kb on - strand at 560.960 kb on - strand at 560.960 kb on - strand at 560.960 kb on - strand at 561.001 kb on - strand, within GFF1300 at 561.001 kb on - strand, within GFF1300 at 561.001 kb on - strand, within GFF1300 at 561.024 kb on - strand, within GFF1300 at 561.040 kb on - strand, within GFF1300 at 561.167 kb on + strand, within GFF1300 at 561.167 kb on + strand, within GFF1300 at 561.168 kb on - strand, within GFF1300 at 561.168 kb on - strand, within GFF1300 at 561.168 kb on - strand, within GFF1300 at 561.194 kb on + strand at 561.195 kb on - strand at 561.195 kb on - strand at 561.205 kb on - strand at 561.205 kb on - strand at 561.206 kb on + strand at 561.207 kb on - strand at 561.207 kb on - strand at 561.207 kb on - strand at 561.228 kb on - strand at 561.305 kb on + strand at 561.305 kb on + strand at 561.306 kb on - strand at 561.306 kb on - strand at 561.308 kb on - strand at 561.311 kb on - strand at 561.445 kb on + strand at 561.445 kb on + strand at 561.445 kb on + strand at 561.445 kb on + strand at 561.446 kb on - strand at 561.452 kb on + strand at 561.452 kb on + strand at 561.452 kb on + strand at 561.453 kb on - strand at 561.504 kb on + strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.509 kb on + strand at 561.509 kb on + strand at 561.510 kb on - strand at 561.510 kb on - strand at 561.519 kb on + strand at 561.589 kb on + strand at 561.590 kb on - strand at 561.590 kb on - strand at 561.594 kb on + strand at 561.595 kb on - strand at 561.596 kb on - strand at 561.655 kb on + strand, within GFF1301 at 561.655 kb on + strand, within GFF1301 at 561.656 kb on - strand, within GFF1301 at 561.662 kb on + strand, within GFF1301 at 561.662 kb on + strand, within GFF1301 at 561.662 kb on + strand, within GFF1301 at 561.664 kb on + strand, within GFF1301 at 561.664 kb on + strand, within GFF1301 at 561.665 kb on - strand, within GFF1301 at 561.665 kb on - strand, within GFF1301 at 561.665 kb on - strand, within GFF1301 at 561.715 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.739 kb on - strand, within GFF1301 at 561.739 kb on - strand, within GFF1301 at 561.758 kb on - strand, within GFF1301 at 561.851 kb on + strand, within GFF1301 at 561.851 kb on + strand, within GFF1301 at 561.851 kb on + strand, within GFF1301 at 561.852 kb on - strand, within GFF1301 at 561.956 kb on + strand at 561.957 kb on - strand at 561.978 kb on + strand at 561.978 kb on + strand at 561.978 kb on + strand at 561.979 kb on - strand at 561.979 kb on - strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.029 kb on - strand at 562.029 kb on - strand at 562.029 kb on - strand at 562.029 kb on - strand at 562.035 kb on + strand at 562.036 kb on - strand at 562.036 kb on - strand at 562.036 kb on - strand at 562.069 kb on + strand at 562.069 kb on + strand at 562.069 kb on + strand at 562.070 kb on - strand at 562.117 kb on + strand at 562.117 kb on + strand at 562.117 kb on + strand at 562.117 kb on + strand at 562.118 kb on - strand at 562.118 kb on - strand at 562.224 kb on + strand at 562.250 kb on + strand at 562.265 kb on + strand at 562.468 kb on + strand, within GFF1302 at 562.468 kb on + strand, within GFF1302 at 562.612 kb on + strand, within GFF1302 at 562.620 kb on + strand, within GFF1302 at 562.750 kb on + strand, within GFF1302 at 562.836 kb on + strand, within GFF1302
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 560,591 + GFF1299 0.77 +0.5 560,592 - GFF1299 0.77 -0.2 560,599 - GFF1299 0.78 -0.4 560,685 - GFF1299 0.84 +0.5 560,712 + GFF1299 0.86 -0.5 560,712 + GFF1299 0.86 -2.5 560,744 + GFF1299 0.88 -1.2 560,773 - GFF1299 0.90 -0.9 560,773 - GFF1299 0.90 -0.4 560,773 - GFF1299 0.90 +0.2 560,773 - GFF1299 0.90 -1.4 560,826 - -0.1 560,883 + -0.3 560,959 + +0.9 560,959 + -0.1 560,960 - +0.9 560,960 - -2.9 560,960 - -1.3 560,960 - -1.8 561,001 - GFF1300 0.18 -0.5 561,001 - GFF1300 0.18 -2.1 561,001 - GFF1300 0.18 -0.2 561,024 - GFF1300 0.28 +1.5 561,040 - GFF1300 0.35 -0.9 561,167 + GFF1300 0.88 +0.7 561,167 + GFF1300 0.88 +0.1 561,168 - GFF1300 0.89 +1.3 561,168 - GFF1300 0.89 -1.4 561,168 - GFF1300 0.89 -1.1 561,194 + -1.4 561,195 - +0.6 561,195 - -0.8 561,205 - -0.2 561,205 - -1.1 561,206 + -0.9 561,207 - -0.1 561,207 - -2.1 561,207 - -0.2 561,228 - -0.1 561,305 + -0.9 561,305 + +0.6 561,306 - -1.1 561,306 - -0.3 561,308 - -1.1 561,311 - +0.5 561,445 + -0.6 561,445 + -0.3 561,445 + -0.9 561,445 + +0.5 561,446 - -0.5 561,452 + -0.5 561,452 + -0.4 561,452 + +0.4 561,453 - -0.1 561,504 + -0.6 561,505 - -1.0 561,505 - -0.2 561,505 - -0.6 561,509 + +0.5 561,509 + -2.1 561,510 - -0.1 561,510 - -1.5 561,519 + -0.6 561,589 + -1.1 561,590 - -1.1 561,590 - -0.9 561,594 + -0.3 561,595 - -0.4 561,596 - +0.4 561,655 + GFF1301 0.19 +1.2 561,655 + GFF1301 0.19 -1.1 561,656 - GFF1301 0.19 +0.5 561,662 + GFF1301 0.21 -0.8 561,662 + GFF1301 0.21 -0.4 561,662 + GFF1301 0.21 -1.6 561,664 + GFF1301 0.21 -1.1 561,664 + GFF1301 0.21 -1.2 561,665 - GFF1301 0.22 -0.8 561,665 - GFF1301 0.22 -1.9 561,665 - GFF1301 0.22 -0.1 561,715 + GFF1301 0.35 -1.9 561,738 + GFF1301 0.41 -0.6 561,738 + GFF1301 0.41 +0.6 561,738 + GFF1301 0.41 -0.4 561,738 + GFF1301 0.41 -0.5 561,738 + GFF1301 0.41 -0.8 561,739 - GFF1301 0.41 +0.9 561,739 - GFF1301 0.41 -0.8 561,758 - GFF1301 0.46 +1.3 561,851 + GFF1301 0.71 -0.1 561,851 + GFF1301 0.71 -0.2 561,851 + GFF1301 0.71 -0.1 561,852 - GFF1301 0.71 -1.1 561,956 + -0.6 561,957 - -0.1 561,978 + -0.8 561,978 + -0.3 561,978 + -0.2 561,979 - -1.1 561,979 - -1.4 562,028 + -1.1 562,028 + -0.5 562,028 + -1.1 562,028 + -0.1 562,028 + -0.3 562,029 - -0.3 562,029 - -0.8 562,029 - -0.2 562,029 - -2.2 562,035 + -0.6 562,036 - -0.6 562,036 - -1.1 562,036 - +0.1 562,069 + +0.3 562,069 + +0.7 562,069 + +0.1 562,070 - -1.1 562,117 + -0.1 562,117 + +0.9 562,117 + -0.2 562,117 + -0.6 562,118 - -2.4 562,118 - -1.1 562,224 + -0.4 562,250 + +0.2 562,265 + -1.4 562,468 + GFF1302 0.13 -1.1 562,468 + GFF1302 0.13 -0.1 562,612 + GFF1302 0.24 -1.1 562,620 + GFF1302 0.25 -0.3 562,750 + GFF1302 0.35 -1.1 562,836 + GFF1302 0.41 -1.1
Or see this region's nucleotide sequence