Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02995 and ABZR88_RS03000 are separated by 0 nucleotides ABZR88_RS03000 and ABZR88_RS03005 are separated by 7 nucleotides ABZR88_RS03005 and ABZR88_RS03010 are separated by 11 nucleotides
ABZR88_RS02995: ABZR88_RS02995 - phosphatase PAP2 family protein, at 713,509 to 714,453
_RS02995
ABZR88_RS03000: ABZR88_RS03000 - sterol desaturase family protein, at 714,454 to 715,074
_RS03000
ABZR88_RS03005: ABZR88_RS03005 - DUF4833 domain-containing protein, at 715,082 to 715,660
_RS03005
ABZR88_RS03010: ABZR88_RS03010 - CDP-alcohol phosphatidyltransferase family protein, at 715,672 to 716,424
_RS03010
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1 at 713.618 kb on - strand, within ABZR88_RS02995 at 713.727 kb on - strand, within ABZR88_RS02995 at 713.744 kb on + strand, within ABZR88_RS02995 at 713.795 kb on + strand, within ABZR88_RS02995 at 713.896 kb on + strand, within ABZR88_RS02995 at 713.927 kb on + strand, within ABZR88_RS02995 at 714.181 kb on + strand, within ABZR88_RS02995 at 714.244 kb on - strand, within ABZR88_RS02995 at 714.250 kb on - strand, within ABZR88_RS02995 at 714.290 kb on + strand, within ABZR88_RS02995 at 714.505 kb on + strand at 714.615 kb on + strand, within ABZR88_RS03000 at 714.621 kb on - strand, within ABZR88_RS03000 at 714.709 kb on - strand, within ABZR88_RS03000 at 714.721 kb on - strand, within ABZR88_RS03000 at 714.852 kb on + strand, within ABZR88_RS03000 at 714.853 kb on - strand, within ABZR88_RS03000 at 714.907 kb on + strand, within ABZR88_RS03000 at 714.968 kb on + strand, within ABZR88_RS03000 at 714.969 kb on - strand, within ABZR88_RS03000 at 714.969 kb on - strand, within ABZR88_RS03000 at 715.242 kb on + strand, within ABZR88_RS03005 at 715.243 kb on - strand, within ABZR88_RS03005 at 715.247 kb on - strand, within ABZR88_RS03005 at 715.322 kb on + strand, within ABZR88_RS03005 at 715.645 kb on + strand at 715.744 kb on - strand at 715.826 kb on + strand, within ABZR88_RS03010 at 715.840 kb on - strand, within ABZR88_RS03010 at 715.967 kb on + strand, within ABZR88_RS03010 at 716.046 kb on - strand, within ABZR88_RS03010
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days remove 713,618 - ABZR88_RS02995 0.12 -1.0 713,727 - ABZR88_RS02995 0.23 -0.5 713,744 + ABZR88_RS02995 0.25 -1.8 713,795 + ABZR88_RS02995 0.30 -1.9 713,896 + ABZR88_RS02995 0.41 -1.1 713,927 + ABZR88_RS02995 0.44 -0.6 714,181 + ABZR88_RS02995 0.71 -1.1 714,244 - ABZR88_RS02995 0.78 -0.3 714,250 - ABZR88_RS02995 0.78 +0.8 714,290 + ABZR88_RS02995 0.83 -1.9 714,505 + -0.7 714,615 + ABZR88_RS03000 0.26 -2.6 714,621 - ABZR88_RS03000 0.27 -0.2 714,709 - ABZR88_RS03000 0.41 -1.0 714,721 - ABZR88_RS03000 0.43 -1.0 714,852 + ABZR88_RS03000 0.64 -2.4 714,853 - ABZR88_RS03000 0.64 -1.4 714,907 + ABZR88_RS03000 0.73 -0.2 714,968 + ABZR88_RS03000 0.83 -0.3 714,969 - ABZR88_RS03000 0.83 -0.5 714,969 - ABZR88_RS03000 0.83 -0.0 715,242 + ABZR88_RS03005 0.28 -0.3 715,243 - ABZR88_RS03005 0.28 +0.3 715,247 - ABZR88_RS03005 0.28 +0.2 715,322 + ABZR88_RS03005 0.41 -0.2 715,645 + -0.6 715,744 - -1.5 715,826 + ABZR88_RS03010 0.20 -0.8 715,840 - ABZR88_RS03010 0.22 +0.3 715,967 + ABZR88_RS03010 0.39 -1.0 716,046 - ABZR88_RS03010 0.50 -0.2
Or see this region's nucleotide sequence