Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02850 and ABZR88_RS02855 are separated by 11 nucleotides ABZR88_RS02855 and ABZR88_RS02860 are separated by 173 nucleotides ABZR88_RS02860 and ABZR88_RS02865 are separated by 40 nucleotides ABZR88_RS02865 and ABZR88_RS02870 are separated by 178 nucleotides
ABZR88_RS02850: ABZR88_RS02850 - pirin family protein, at 678,050 to 678,919
_RS02850
ABZR88_RS02855: ABZR88_RS02855 - GNAT family N-acetyltransferase, at 678,931 to 679,224
_RS02855
ABZR88_RS02860: ABZR88_RS02860 - hypothetical protein, at 679,398 to 679,661
_RS02860
ABZR88_RS02865: ABZR88_RS02865 - hypothetical protein, at 679,702 to 680,193
_RS02865
ABZR88_RS02870: ABZR88_RS02870 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 680,372 to 681,112
_RS02870
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1 at 678.427 kb on - strand, within ABZR88_RS02850 at 678.427 kb on - strand, within ABZR88_RS02850 at 678.427 kb on - strand, within ABZR88_RS02850 at 678.427 kb on - strand, within ABZR88_RS02850 at 678.565 kb on + strand, within ABZR88_RS02850 at 678.679 kb on - strand, within ABZR88_RS02850 at 678.792 kb on + strand, within ABZR88_RS02850 at 678.909 kb on + strand at 679.109 kb on + strand, within ABZR88_RS02855 at 679.110 kb on - strand, within ABZR88_RS02855 at 679.379 kb on + strand at 679.421 kb on - strand at 679.453 kb on + strand, within ABZR88_RS02860 at 679.476 kb on + strand, within ABZR88_RS02860 at 679.483 kb on - strand, within ABZR88_RS02860 at 679.720 kb on + strand at 679.730 kb on + strand at 680.222 kb on + strand at 680.251 kb on - strand at 680.434 kb on - strand at 680.544 kb on + strand, within ABZR88_RS02870 at 680.544 kb on + strand, within ABZR88_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days remove 678,427 - ABZR88_RS02850 0.43 +0.1 678,427 - ABZR88_RS02850 0.43 -0.3 678,427 - ABZR88_RS02850 0.43 -0.3 678,427 - ABZR88_RS02850 0.43 -0.0 678,565 + ABZR88_RS02850 0.59 -0.6 678,679 - ABZR88_RS02850 0.72 -0.2 678,792 + ABZR88_RS02850 0.85 -0.8 678,909 + -0.4 679,109 + ABZR88_RS02855 0.61 -1.8 679,110 - ABZR88_RS02855 0.61 -0.1 679,379 + +0.2 679,421 - +0.4 679,453 + ABZR88_RS02860 0.21 -0.4 679,476 + ABZR88_RS02860 0.30 +0.7 679,483 - ABZR88_RS02860 0.32 -0.4 679,720 + +0.5 679,730 + -0.3 680,222 + -0.2 680,251 - -0.8 680,434 - +0.9 680,544 + ABZR88_RS02870 0.23 -0.0 680,544 + ABZR88_RS02870 0.23 +0.6
Or see this region's nucleotide sequence