Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02530 and ABZR88_RS02535 are separated by 126 nucleotides ABZR88_RS02535 and ABZR88_RS02540 are separated by 79 nucleotides ABZR88_RS02540 and ABZR88_RS02545 are separated by 10 nucleotides
ABZR88_RS02530: ABZR88_RS02530 - hypothetical protein, at 577,466 to 578,722
_RS02530
ABZR88_RS02535: ABZR88_RS02535 - OmpH family outer membrane protein, at 578,849 to 579,412
_RS02535
ABZR88_RS02540: ABZR88_RS02540 - hypothetical protein, at 579,492 to 579,971
_RS02540
ABZR88_RS02545: ABZR88_RS02545 - hypothetical protein, at 579,982 to 585,303
_RS02545
Position (kb) 578
579
580 Strain fitness (log2 ratio) -1
0
1 at 577.895 kb on - strand, within ABZR88_RS02530 at 578.191 kb on + strand, within ABZR88_RS02530 at 578.280 kb on - strand, within ABZR88_RS02530 at 578.291 kb on + strand, within ABZR88_RS02530 at 578.362 kb on - strand, within ABZR88_RS02530 at 578.381 kb on - strand, within ABZR88_RS02530 at 578.469 kb on + strand, within ABZR88_RS02530 at 578.469 kb on + strand, within ABZR88_RS02530 at 578.495 kb on + strand, within ABZR88_RS02530 at 578.584 kb on - strand, within ABZR88_RS02530 at 578.735 kb on + strand at 578.736 kb on - strand at 578.755 kb on + strand at 578.768 kb on - strand at 578.787 kb on + strand at 578.889 kb on + strand at 578.898 kb on - strand at 578.908 kb on + strand, within ABZR88_RS02535 at 578.927 kb on + strand, within ABZR88_RS02535 at 578.937 kb on - strand, within ABZR88_RS02535 at 578.974 kb on - strand, within ABZR88_RS02535 at 579.067 kb on + strand, within ABZR88_RS02535 at 579.068 kb on - strand, within ABZR88_RS02535 at 579.205 kb on - strand, within ABZR88_RS02535 at 579.230 kb on - strand, within ABZR88_RS02535 at 579.502 kb on - strand at 579.676 kb on + strand, within ABZR88_RS02540 at 579.681 kb on + strand, within ABZR88_RS02540 at 579.693 kb on - strand, within ABZR88_RS02540 at 579.712 kb on + strand, within ABZR88_RS02540 at 579.735 kb on - strand, within ABZR88_RS02540 at 579.798 kb on + strand, within ABZR88_RS02540 at 579.901 kb on + strand, within ABZR88_RS02540 at 579.901 kb on + strand, within ABZR88_RS02540 at 579.986 kb on - strand at 580.151 kb on + strand at 580.238 kb on - strand at 580.238 kb on - strand at 580.297 kb on - strand at 580.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days remove 577,895 - ABZR88_RS02530 0.34 +0.3 578,191 + ABZR88_RS02530 0.58 -0.0 578,280 - ABZR88_RS02530 0.65 -0.3 578,291 + ABZR88_RS02530 0.66 -1.0 578,362 - ABZR88_RS02530 0.71 +0.1 578,381 - ABZR88_RS02530 0.73 -0.8 578,469 + ABZR88_RS02530 0.80 +0.8 578,469 + ABZR88_RS02530 0.80 +0.1 578,495 + ABZR88_RS02530 0.82 +0.6 578,584 - ABZR88_RS02530 0.89 +0.2 578,735 + -0.2 578,736 - -0.0 578,755 + +0.5 578,768 - +0.3 578,787 + -0.9 578,889 + -0.1 578,898 - +0.4 578,908 + ABZR88_RS02535 0.10 +0.3 578,927 + ABZR88_RS02535 0.14 -1.0 578,937 - ABZR88_RS02535 0.16 +0.2 578,974 - ABZR88_RS02535 0.22 +0.9 579,067 + ABZR88_RS02535 0.39 +0.0 579,068 - ABZR88_RS02535 0.39 +0.3 579,205 - ABZR88_RS02535 0.63 +0.6 579,230 - ABZR88_RS02535 0.68 +0.3 579,502 - +0.3 579,676 + ABZR88_RS02540 0.38 -1.6 579,681 + ABZR88_RS02540 0.39 -0.0 579,693 - ABZR88_RS02540 0.42 -0.2 579,712 + ABZR88_RS02540 0.46 +0.2 579,735 - ABZR88_RS02540 0.51 +0.0 579,798 + ABZR88_RS02540 0.64 +0.1 579,901 + ABZR88_RS02540 0.85 +0.3 579,901 + ABZR88_RS02540 0.85 +0.3 579,986 - +0.6 580,151 + -0.1 580,238 - +0.1 580,238 - -0.3 580,297 - -1.5 580,390 - +0.2
Or see this region's nucleotide sequence