Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01150 and ABZR88_RS01155 are separated by 360 nucleotides ABZR88_RS01155 and ABZR88_RS01160 are separated by 84 nucleotides ABZR88_RS01160 and ABZR88_RS01165 are separated by 21 nucleotides ABZR88_RS01165 and ABZR88_RS01170 are separated by 308 nucleotides
ABZR88_RS01150: ABZR88_RS01150 - DUF5103 domain-containing protein, at 265,811 to 267,073
_RS01150
ABZR88_RS01155: ABZR88_RS01155 - phenylalanine--tRNA ligase subunit beta, at 267,434 to 269,833
_RS01155
ABZR88_RS01160: ABZR88_RS01160 - hypothetical protein, at 269,918 to 270,205
_RS01160
ABZR88_RS01165: ABZR88_RS01165 - cell division protein ZapA, at 270,227 to 270,520
_RS01165
ABZR88_RS01170: ABZR88_RS01170 - ribonuclease Y, at 270,829 to 272,391
_RS01170
Position (kb) 267
268
269
270 Strain fitness (log2 ratio) -2
-1
0
1 at 266.486 kb on - strand, within ABZR88_RS01150 at 266.486 kb on - strand, within ABZR88_RS01150 at 266.507 kb on - strand, within ABZR88_RS01150 at 266.594 kb on - strand, within ABZR88_RS01150 at 266.598 kb on - strand, within ABZR88_RS01150 at 266.747 kb on + strand, within ABZR88_RS01150 at 266.816 kb on + strand, within ABZR88_RS01150 at 266.841 kb on + strand, within ABZR88_RS01150 at 266.871 kb on - strand, within ABZR88_RS01150 at 266.900 kb on + strand, within ABZR88_RS01150 at 267.005 kb on + strand at 267.072 kb on - strand at 267.072 kb on - strand at 267.072 kb on - strand at 269.864 kb on + strand at 269.867 kb on + strand at 269.879 kb on + strand at 270.103 kb on + strand, within ABZR88_RS01160 at 270.178 kb on + strand at 270.249 kb on + strand at 270.253 kb on + strand at 270.310 kb on + strand, within ABZR88_RS01165 at 270.775 kb on + strand at 270.812 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days remove 266,486 - ABZR88_RS01150 0.53 -0.1 266,486 - ABZR88_RS01150 0.53 -0.5 266,507 - ABZR88_RS01150 0.55 -0.4 266,594 - ABZR88_RS01150 0.62 +0.0 266,598 - ABZR88_RS01150 0.62 +0.2 266,747 + ABZR88_RS01150 0.74 +0.2 266,816 + ABZR88_RS01150 0.80 +0.7 266,841 + ABZR88_RS01150 0.82 +0.3 266,871 - ABZR88_RS01150 0.84 -1.8 266,900 + ABZR88_RS01150 0.86 +0.4 267,005 + -0.7 267,072 - -0.1 267,072 - +0.1 267,072 - -0.1 269,864 + -0.7 269,867 + -0.4 269,879 + +0.5 270,103 + ABZR88_RS01160 0.64 +0.3 270,178 + +0.4 270,249 + +0.2 270,253 + +0.1 270,310 + ABZR88_RS01165 0.28 +0.7 270,775 + -0.3 270,812 + -0.9
Or see this region's nucleotide sequence