Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00825 and ABZR88_RS00830 are separated by 243 nucleotides ABZR88_RS00830 and ABZR88_RS00835 are separated by 178 nucleotides ABZR88_RS00835 and ABZR88_RS00840 are separated by 534 nucleotides ABZR88_RS00840 and ABZR88_RS00845 overlap by 1 nucleotides
ABZR88_RS00825: ABZR88_RS00825 - cystathionine gamma-synthase family protein, at 159,896 to 161,140
_RS00825
ABZR88_RS00830: ABZR88_RS00830 - hypothetical protein, at 161,384 to 161,791
_RS00830
ABZR88_RS00835: ABZR88_RS00835 - TIM-barrel domain-containing protein, at 161,970 to 164,360
_RS00835
ABZR88_RS00840: ABZR88_RS00840 - VOC family protein, at 164,895 to 165,281
_RS00840
ABZR88_RS00845: ABZR88_RS00845 - acyl carrier protein, at 165,281 to 165,523
_RS00845
Position (kb) 161
162
163
164
165 Strain fitness (log2 ratio) -2
-1
0
1 at 161.010 kb on - strand, within ABZR88_RS00825 at 161.280 kb on - strand at 161.281 kb on + strand at 161.281 kb on + strand at 161.360 kb on - strand at 161.421 kb on + strand at 161.426 kb on - strand, within ABZR88_RS00830 at 161.627 kb on + strand, within ABZR88_RS00830 at 161.691 kb on - strand, within ABZR88_RS00830 at 161.726 kb on + strand, within ABZR88_RS00830 at 161.881 kb on + strand at 161.945 kb on + strand at 162.006 kb on - strand at 162.064 kb on - strand at 162.066 kb on + strand at 162.103 kb on + strand at 162.162 kb on - strand at 162.344 kb on + strand, within ABZR88_RS00835 at 162.410 kb on - strand, within ABZR88_RS00835 at 162.595 kb on + strand, within ABZR88_RS00835 at 162.634 kb on + strand, within ABZR88_RS00835 at 162.780 kb on - strand, within ABZR88_RS00835 at 162.930 kb on - strand, within ABZR88_RS00835 at 162.959 kb on + strand, within ABZR88_RS00835 at 163.063 kb on + strand, within ABZR88_RS00835 at 163.254 kb on - strand, within ABZR88_RS00835 at 163.272 kb on + strand, within ABZR88_RS00835 at 163.553 kb on + strand, within ABZR88_RS00835 at 163.641 kb on - strand, within ABZR88_RS00835 at 163.672 kb on + strand, within ABZR88_RS00835 at 163.678 kb on - strand, within ABZR88_RS00835 at 163.699 kb on - strand, within ABZR88_RS00835 at 163.811 kb on + strand, within ABZR88_RS00835 at 163.940 kb on + strand, within ABZR88_RS00835 at 164.184 kb on - strand at 164.385 kb on - strand at 164.470 kb on + strand at 164.642 kb on - strand at 164.695 kb on - strand at 164.776 kb on - strand at 164.804 kb on + strand at 164.936 kb on - strand, within ABZR88_RS00840 at 165.062 kb on - strand, within ABZR88_RS00840
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days remove 161,010 - ABZR88_RS00825 0.89 -1.2 161,280 - +0.1 161,281 + -0.2 161,281 + +1.1 161,360 - -1.3 161,421 + -0.4 161,426 - ABZR88_RS00830 0.10 -0.2 161,627 + ABZR88_RS00830 0.60 -0.4 161,691 - ABZR88_RS00830 0.75 +0.3 161,726 + ABZR88_RS00830 0.84 -0.7 161,881 + +0.0 161,945 + -0.1 162,006 - -0.2 162,064 - -0.0 162,066 + -0.2 162,103 + -0.1 162,162 - -0.0 162,344 + ABZR88_RS00835 0.16 -0.9 162,410 - ABZR88_RS00835 0.18 -0.0 162,595 + ABZR88_RS00835 0.26 -0.0 162,634 + ABZR88_RS00835 0.28 +0.5 162,780 - ABZR88_RS00835 0.34 -0.7 162,930 - ABZR88_RS00835 0.40 -0.4 162,959 + ABZR88_RS00835 0.41 -0.2 163,063 + ABZR88_RS00835 0.46 -0.5 163,254 - ABZR88_RS00835 0.54 -0.3 163,272 + ABZR88_RS00835 0.54 -1.6 163,553 + ABZR88_RS00835 0.66 +1.1 163,641 - ABZR88_RS00835 0.70 +0.4 163,672 + ABZR88_RS00835 0.71 -0.8 163,678 - ABZR88_RS00835 0.71 -0.7 163,699 - ABZR88_RS00835 0.72 -2.1 163,811 + ABZR88_RS00835 0.77 -0.5 163,940 + ABZR88_RS00835 0.82 +0.3 164,184 - +0.4 164,385 - -0.0 164,470 + -0.3 164,642 - +0.1 164,695 - +0.1 164,776 - +0.0 164,804 + -0.3 164,936 - ABZR88_RS00840 0.11 +0.1 165,062 - ABZR88_RS00840 0.43 -0.0
Or see this region's nucleotide sequence