Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19055 and ABZR88_RS19060 are separated by 13 nucleotides ABZR88_RS19060 and ABZR88_RS19065 are separated by 234 nucleotides ABZR88_RS19065 and ABZR88_RS19070 are separated by 13 nucleotides ABZR88_RS19070 and ABZR88_RS19075 are separated by 377 nucleotides
ABZR88_RS19055: ABZR88_RS19055 - efflux RND transporter periplasmic adaptor subunit, at 4,655,336 to 4,656,421
_RS19055
ABZR88_RS19060: ABZR88_RS19060 - MarR family winged helix-turn-helix transcriptional regulator, at 4,656,435 to 4,656,899
_RS19060
ABZR88_RS19065: ABZR88_RS19065 - 1-hydroxycarotenoid 3,4-desaturase CrtD, at 4,657,134 to 4,658,603
_RS19065
ABZR88_RS19070: ABZR88_RS19070 - hypothetical protein, at 4,658,617 to 4,658,805
_RS19070
ABZR88_RS19075: ABZR88_RS19075 - LysR substrate-binding domain-containing protein, at 4,659,183 to 4,660,076
_RS19075
Position (kb)
4657
4658
4659 Strain fitness (log2 ratio)
-2
-1
0
1 at 4656.179 kb on - strand, within ABZR88_RS19055 at 4656.359 kb on - strand at 4656.364 kb on - strand at 4656.381 kb on - strand at 4656.381 kb on - strand at 4656.392 kb on - strand at 4656.392 kb on - strand at 4656.398 kb on - strand at 4656.510 kb on + strand, within ABZR88_RS19060 at 4656.575 kb on + strand, within ABZR88_RS19060 at 4656.669 kb on + strand, within ABZR88_RS19060 at 4656.705 kb on + strand, within ABZR88_RS19060 at 4656.793 kb on + strand, within ABZR88_RS19060 at 4656.848 kb on - strand, within ABZR88_RS19060 at 4656.858 kb on + strand at 4656.865 kb on - strand at 4656.926 kb on + strand at 4656.952 kb on + strand at 4656.952 kb on + strand at 4657.126 kb on + strand at 4657.292 kb on - strand, within ABZR88_RS19065 at 4657.295 kb on + strand, within ABZR88_RS19065 at 4657.296 kb on - strand, within ABZR88_RS19065 at 4657.304 kb on + strand, within ABZR88_RS19065 at 4657.432 kb on - strand, within ABZR88_RS19065 at 4657.600 kb on + strand, within ABZR88_RS19065 at 4657.601 kb on - strand, within ABZR88_RS19065 at 4657.779 kb on + strand, within ABZR88_RS19065 at 4657.862 kb on + strand, within ABZR88_RS19065 at 4657.919 kb on + strand, within ABZR88_RS19065 at 4657.920 kb on - strand, within ABZR88_RS19065 at 4657.921 kb on + strand, within ABZR88_RS19065 at 4657.921 kb on + strand, within ABZR88_RS19065 at 4657.922 kb on - strand, within ABZR88_RS19065 at 4657.942 kb on + strand, within ABZR88_RS19065 at 4658.017 kb on + strand, within ABZR88_RS19065 at 4658.227 kb on + strand, within ABZR88_RS19065 at 4658.409 kb on + strand, within ABZR88_RS19065 at 4658.410 kb on - strand, within ABZR88_RS19065 at 4658.414 kb on - strand, within ABZR88_RS19065 at 4658.891 kb on - strand at 4658.919 kb on - strand at 4659.438 kb on - strand, within ABZR88_RS19075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,656,179 - ABZR88_RS19055 0.78 +0.6 4,656,359 - +0.1 4,656,364 - +0.3 4,656,381 - +0.5 4,656,381 - -0.1 4,656,392 - +0.1 4,656,392 - -0.0 4,656,398 - +0.3 4,656,510 + ABZR88_RS19060 0.16 +0.1 4,656,575 + ABZR88_RS19060 0.30 +1.1 4,656,669 + ABZR88_RS19060 0.50 +1.7 4,656,705 + ABZR88_RS19060 0.58 -0.2 4,656,793 + ABZR88_RS19060 0.77 -0.0 4,656,848 - ABZR88_RS19060 0.89 -0.2 4,656,858 + -0.4 4,656,865 - -1.8 4,656,926 + -0.2 4,656,952 + -0.2 4,656,952 + -0.3 4,657,126 + +0.2 4,657,292 - ABZR88_RS19065 0.11 +0.5 4,657,295 + ABZR88_RS19065 0.11 -0.1 4,657,296 - ABZR88_RS19065 0.11 +0.1 4,657,304 + ABZR88_RS19065 0.12 -0.2 4,657,432 - ABZR88_RS19065 0.20 -0.3 4,657,600 + ABZR88_RS19065 0.32 +0.1 4,657,601 - ABZR88_RS19065 0.32 +0.7 4,657,779 + ABZR88_RS19065 0.44 +1.3 4,657,862 + ABZR88_RS19065 0.50 -1.1 4,657,919 + ABZR88_RS19065 0.53 -0.2 4,657,920 - ABZR88_RS19065 0.53 -0.2 4,657,921 + ABZR88_RS19065 0.54 +0.8 4,657,921 + ABZR88_RS19065 0.54 -0.2 4,657,922 - ABZR88_RS19065 0.54 -0.5 4,657,942 + ABZR88_RS19065 0.55 +0.0 4,658,017 + ABZR88_RS19065 0.60 +0.3 4,658,227 + ABZR88_RS19065 0.74 -1.4 4,658,409 + ABZR88_RS19065 0.87 +0.1 4,658,410 - ABZR88_RS19065 0.87 +0.3 4,658,414 - ABZR88_RS19065 0.87 -0.0 4,658,891 - +0.9 4,658,919 - -0.0 4,659,438 - ABZR88_RS19075 0.29 -0.4
Or see this region's nucleotide sequence