Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS19065

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS19055 and ABZR88_RS19060 are separated by 13 nucleotidesABZR88_RS19060 and ABZR88_RS19065 are separated by 234 nucleotidesABZR88_RS19065 and ABZR88_RS19070 are separated by 13 nucleotidesABZR88_RS19070 and ABZR88_RS19075 are separated by 377 nucleotides ABZR88_RS19055: ABZR88_RS19055 - efflux RND transporter periplasmic adaptor subunit, at 4,655,336 to 4,656,421 _RS19055 ABZR88_RS19060: ABZR88_RS19060 - MarR family winged helix-turn-helix transcriptional regulator, at 4,656,435 to 4,656,899 _RS19060 ABZR88_RS19065: ABZR88_RS19065 - 1-hydroxycarotenoid 3,4-desaturase CrtD, at 4,657,134 to 4,658,603 _RS19065 ABZR88_RS19070: ABZR88_RS19070 - hypothetical protein, at 4,658,617 to 4,658,805 _RS19070 ABZR88_RS19075: ABZR88_RS19075 - LysR substrate-binding domain-containing protein, at 4,659,183 to 4,660,076 _RS19075 Position (kb) 4657 4658 4659Strain fitness (log2 ratio) -2 -1 0 1at 4656.179 kb on - strand, within ABZR88_RS19055at 4656.359 kb on - strandat 4656.364 kb on - strandat 4656.381 kb on - strandat 4656.381 kb on - strandat 4656.392 kb on - strandat 4656.392 kb on - strandat 4656.398 kb on - strandat 4656.510 kb on + strand, within ABZR88_RS19060at 4656.575 kb on + strand, within ABZR88_RS19060at 4656.669 kb on + strand, within ABZR88_RS19060at 4656.705 kb on + strand, within ABZR88_RS19060at 4656.793 kb on + strand, within ABZR88_RS19060at 4656.848 kb on - strand, within ABZR88_RS19060at 4656.858 kb on + strandat 4656.865 kb on - strandat 4656.926 kb on + strandat 4656.952 kb on + strandat 4656.952 kb on + strandat 4657.126 kb on + strandat 4657.292 kb on - strand, within ABZR88_RS19065at 4657.295 kb on + strand, within ABZR88_RS19065at 4657.296 kb on - strand, within ABZR88_RS19065at 4657.304 kb on + strand, within ABZR88_RS19065at 4657.432 kb on - strand, within ABZR88_RS19065at 4657.600 kb on + strand, within ABZR88_RS19065at 4657.601 kb on - strand, within ABZR88_RS19065at 4657.779 kb on + strand, within ABZR88_RS19065at 4657.862 kb on + strand, within ABZR88_RS19065at 4657.919 kb on + strand, within ABZR88_RS19065at 4657.920 kb on - strand, within ABZR88_RS19065at 4657.921 kb on + strand, within ABZR88_RS19065at 4657.921 kb on + strand, within ABZR88_RS19065at 4657.922 kb on - strand, within ABZR88_RS19065at 4657.942 kb on + strand, within ABZR88_RS19065at 4658.017 kb on + strand, within ABZR88_RS19065at 4658.227 kb on + strand, within ABZR88_RS19065at 4658.409 kb on + strand, within ABZR88_RS19065at 4658.410 kb on - strand, within ABZR88_RS19065at 4658.414 kb on - strand, within ABZR88_RS19065at 4658.891 kb on - strandat 4658.919 kb on - strandat 4659.438 kb on - strand, within ABZR88_RS19075

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,656,179 - ABZR88_RS19055 0.78 +0.6
4,656,359 - +0.1
4,656,364 - +0.3
4,656,381 - +0.5
4,656,381 - -0.1
4,656,392 - +0.1
4,656,392 - -0.0
4,656,398 - +0.3
4,656,510 + ABZR88_RS19060 0.16 +0.1
4,656,575 + ABZR88_RS19060 0.30 +1.1
4,656,669 + ABZR88_RS19060 0.50 +1.7
4,656,705 + ABZR88_RS19060 0.58 -0.2
4,656,793 + ABZR88_RS19060 0.77 -0.0
4,656,848 - ABZR88_RS19060 0.89 -0.2
4,656,858 + -0.4
4,656,865 - -1.8
4,656,926 + -0.2
4,656,952 + -0.2
4,656,952 + -0.3
4,657,126 + +0.2
4,657,292 - ABZR88_RS19065 0.11 +0.5
4,657,295 + ABZR88_RS19065 0.11 -0.1
4,657,296 - ABZR88_RS19065 0.11 +0.1
4,657,304 + ABZR88_RS19065 0.12 -0.2
4,657,432 - ABZR88_RS19065 0.20 -0.3
4,657,600 + ABZR88_RS19065 0.32 +0.1
4,657,601 - ABZR88_RS19065 0.32 +0.7
4,657,779 + ABZR88_RS19065 0.44 +1.3
4,657,862 + ABZR88_RS19065 0.50 -1.1
4,657,919 + ABZR88_RS19065 0.53 -0.2
4,657,920 - ABZR88_RS19065 0.53 -0.2
4,657,921 + ABZR88_RS19065 0.54 +0.8
4,657,921 + ABZR88_RS19065 0.54 -0.2
4,657,922 - ABZR88_RS19065 0.54 -0.5
4,657,942 + ABZR88_RS19065 0.55 +0.0
4,658,017 + ABZR88_RS19065 0.60 +0.3
4,658,227 + ABZR88_RS19065 0.74 -1.4
4,658,409 + ABZR88_RS19065 0.87 +0.1
4,658,410 - ABZR88_RS19065 0.87 +0.3
4,658,414 - ABZR88_RS19065 0.87 -0.0
4,658,891 - +0.9
4,658,919 - -0.0
4,659,438 - ABZR88_RS19075 0.29 -0.4

Or see this region's nucleotide sequence