Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13630

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13620 and ABZR88_RS13625 are separated by 94 nucleotidesABZR88_RS13625 and ABZR88_RS13630 are separated by 3 nucleotidesABZR88_RS13630 and ABZR88_RS13635 are separated by 248 nucleotidesABZR88_RS13635 and ABZR88_RS13640 are separated by 67 nucleotides ABZR88_RS13620: ABZR88_RS13620 - methionyl-tRNA formyltransferase, at 3,407,432 to 3,408,388 _RS13620 ABZR88_RS13625: ABZR88_RS13625 - aspartyl/asparaginyl beta-hydroxylase domain-containing protein, at 3,408,483 to 3,409,205 _RS13625 ABZR88_RS13630: ABZR88_RS13630 - hypothetical protein, at 3,409,209 to 3,410,144 _RS13630 ABZR88_RS13635: ABZR88_RS13635 - phage tail protein, at 3,410,393 to 3,410,923 _RS13635 ABZR88_RS13640: ABZR88_RS13640 - phage tail protein, at 3,410,991 to 3,411,518 _RS13640 Position (kb) 3409 3410 3411Strain fitness (log2 ratio) -1 0 1at 3408.246 kb on - strand, within ABZR88_RS13620at 3408.307 kb on + strandat 3408.310 kb on + strandat 3408.310 kb on + strandat 3408.417 kb on + strandat 3408.426 kb on - strandat 3408.639 kb on + strand, within ABZR88_RS13625at 3408.693 kb on + strand, within ABZR88_RS13625at 3408.697 kb on - strand, within ABZR88_RS13625at 3408.705 kb on + strand, within ABZR88_RS13625at 3408.719 kb on + strand, within ABZR88_RS13625at 3408.991 kb on + strand, within ABZR88_RS13625at 3409.016 kb on + strand, within ABZR88_RS13625at 3409.041 kb on - strand, within ABZR88_RS13625at 3409.094 kb on - strand, within ABZR88_RS13625at 3409.174 kb on - strandat 3409.211 kb on - strandat 3409.310 kb on + strand, within ABZR88_RS13630at 3409.680 kb on + strand, within ABZR88_RS13630at 3409.684 kb on + strand, within ABZR88_RS13630at 3409.743 kb on - strand, within ABZR88_RS13630at 3409.771 kb on - strand, within ABZR88_RS13630at 3409.906 kb on - strand, within ABZR88_RS13630at 3409.972 kb on + strand, within ABZR88_RS13630at 3409.972 kb on + strand, within ABZR88_RS13630at 3410.051 kb on + strandat 3410.055 kb on - strandat 3410.067 kb on - strandat 3410.067 kb on - strandat 3410.078 kb on + strandat 3410.078 kb on + strandat 3410.079 kb on - strandat 3410.132 kb on + strandat 3410.224 kb on + strandat 3410.228 kb on + strandat 3410.229 kb on - strandat 3410.359 kb on + strandat 3410.360 kb on - strandat 3410.405 kb on + strandat 3410.525 kb on + strand, within ABZR88_RS13635at 3410.542 kb on - strand, within ABZR88_RS13635at 3410.620 kb on + strand, within ABZR88_RS13635at 3410.621 kb on - strand, within ABZR88_RS13635at 3410.736 kb on + strand, within ABZR88_RS13635at 3410.739 kb on - strand, within ABZR88_RS13635at 3410.855 kb on - strand, within ABZR88_RS13635at 3410.860 kb on - strand, within ABZR88_RS13635at 3410.882 kb on + strandat 3411.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,408,246 - ABZR88_RS13620 0.85 +0.0
3,408,307 + +0.2
3,408,310 + -0.5
3,408,310 + -0.1
3,408,417 + -0.0
3,408,426 - -0.2
3,408,639 + ABZR88_RS13625 0.22 -0.1
3,408,693 + ABZR88_RS13625 0.29 -0.3
3,408,697 - ABZR88_RS13625 0.30 -0.2
3,408,705 + ABZR88_RS13625 0.31 -0.7
3,408,719 + ABZR88_RS13625 0.33 +0.4
3,408,991 + ABZR88_RS13625 0.70 -0.4
3,409,016 + ABZR88_RS13625 0.74 +0.0
3,409,041 - ABZR88_RS13625 0.77 -0.2
3,409,094 - ABZR88_RS13625 0.85 -0.3
3,409,174 - -0.2
3,409,211 - -0.0
3,409,310 + ABZR88_RS13630 0.11 +0.0
3,409,680 + ABZR88_RS13630 0.50 +0.3
3,409,684 + ABZR88_RS13630 0.51 +0.1
3,409,743 - ABZR88_RS13630 0.57 -0.3
3,409,771 - ABZR88_RS13630 0.60 -0.1
3,409,906 - ABZR88_RS13630 0.74 -0.3
3,409,972 + ABZR88_RS13630 0.82 -0.0
3,409,972 + ABZR88_RS13630 0.82 -0.1
3,410,051 + -0.3
3,410,055 - +0.0
3,410,067 - -0.0
3,410,067 - +0.1
3,410,078 + -0.1
3,410,078 + +0.1
3,410,079 - -0.1
3,410,132 + -0.7
3,410,224 + +0.1
3,410,228 + -0.0
3,410,229 - -0.6
3,410,359 + -0.1
3,410,360 - -1.0
3,410,405 + +0.0
3,410,525 + ABZR88_RS13635 0.25 -0.3
3,410,542 - ABZR88_RS13635 0.28 -0.5
3,410,620 + ABZR88_RS13635 0.43 +0.1
3,410,621 - ABZR88_RS13635 0.43 -0.0
3,410,736 + ABZR88_RS13635 0.65 +0.0
3,410,739 - ABZR88_RS13635 0.65 -0.7
3,410,855 - ABZR88_RS13635 0.87 -0.0
3,410,860 - ABZR88_RS13635 0.88 +0.3
3,410,882 + -0.0
3,411,023 - -0.1

Or see this region's nucleotide sequence