Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13620 and ABZR88_RS13625 are separated by 94 nucleotides ABZR88_RS13625 and ABZR88_RS13630 are separated by 3 nucleotides ABZR88_RS13630 and ABZR88_RS13635 are separated by 248 nucleotides ABZR88_RS13635 and ABZR88_RS13640 are separated by 67 nucleotides
ABZR88_RS13620: ABZR88_RS13620 - methionyl-tRNA formyltransferase, at 3,407,432 to 3,408,388
_RS13620
ABZR88_RS13625: ABZR88_RS13625 - aspartyl/asparaginyl beta-hydroxylase domain-containing protein, at 3,408,483 to 3,409,205
_RS13625
ABZR88_RS13630: ABZR88_RS13630 - hypothetical protein, at 3,409,209 to 3,410,144
_RS13630
ABZR88_RS13635: ABZR88_RS13635 - phage tail protein, at 3,410,393 to 3,410,923
_RS13635
ABZR88_RS13640: ABZR88_RS13640 - phage tail protein, at 3,410,991 to 3,411,518
_RS13640
Position (kb)
3409
3410
3411 Strain fitness (log2 ratio)
-1
0
1 at 3408.246 kb on - strand, within ABZR88_RS13620 at 3408.307 kb on + strand at 3408.310 kb on + strand at 3408.310 kb on + strand at 3408.417 kb on + strand at 3408.426 kb on - strand at 3408.639 kb on + strand, within ABZR88_RS13625 at 3408.693 kb on + strand, within ABZR88_RS13625 at 3408.697 kb on - strand, within ABZR88_RS13625 at 3408.705 kb on + strand, within ABZR88_RS13625 at 3408.719 kb on + strand, within ABZR88_RS13625 at 3408.991 kb on + strand, within ABZR88_RS13625 at 3409.016 kb on + strand, within ABZR88_RS13625 at 3409.041 kb on - strand, within ABZR88_RS13625 at 3409.094 kb on - strand, within ABZR88_RS13625 at 3409.174 kb on - strand at 3409.211 kb on - strand at 3409.310 kb on + strand, within ABZR88_RS13630 at 3409.680 kb on + strand, within ABZR88_RS13630 at 3409.684 kb on + strand, within ABZR88_RS13630 at 3409.743 kb on - strand, within ABZR88_RS13630 at 3409.771 kb on - strand, within ABZR88_RS13630 at 3409.906 kb on - strand, within ABZR88_RS13630 at 3409.972 kb on + strand, within ABZR88_RS13630 at 3409.972 kb on + strand, within ABZR88_RS13630 at 3410.051 kb on + strand at 3410.055 kb on - strand at 3410.067 kb on - strand at 3410.067 kb on - strand at 3410.078 kb on + strand at 3410.078 kb on + strand at 3410.079 kb on - strand at 3410.132 kb on + strand at 3410.224 kb on + strand at 3410.228 kb on + strand at 3410.229 kb on - strand at 3410.359 kb on + strand at 3410.360 kb on - strand at 3410.405 kb on + strand at 3410.525 kb on + strand, within ABZR88_RS13635 at 3410.542 kb on - strand, within ABZR88_RS13635 at 3410.620 kb on + strand, within ABZR88_RS13635 at 3410.621 kb on - strand, within ABZR88_RS13635 at 3410.736 kb on + strand, within ABZR88_RS13635 at 3410.739 kb on - strand, within ABZR88_RS13635 at 3410.855 kb on - strand, within ABZR88_RS13635 at 3410.860 kb on - strand, within ABZR88_RS13635 at 3410.882 kb on + strand at 3411.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,408,246 - ABZR88_RS13620 0.85 +0.0 3,408,307 + +0.2 3,408,310 + -0.5 3,408,310 + -0.1 3,408,417 + -0.0 3,408,426 - -0.2 3,408,639 + ABZR88_RS13625 0.22 -0.1 3,408,693 + ABZR88_RS13625 0.29 -0.3 3,408,697 - ABZR88_RS13625 0.30 -0.2 3,408,705 + ABZR88_RS13625 0.31 -0.7 3,408,719 + ABZR88_RS13625 0.33 +0.4 3,408,991 + ABZR88_RS13625 0.70 -0.4 3,409,016 + ABZR88_RS13625 0.74 +0.0 3,409,041 - ABZR88_RS13625 0.77 -0.2 3,409,094 - ABZR88_RS13625 0.85 -0.3 3,409,174 - -0.2 3,409,211 - -0.0 3,409,310 + ABZR88_RS13630 0.11 +0.0 3,409,680 + ABZR88_RS13630 0.50 +0.3 3,409,684 + ABZR88_RS13630 0.51 +0.1 3,409,743 - ABZR88_RS13630 0.57 -0.3 3,409,771 - ABZR88_RS13630 0.60 -0.1 3,409,906 - ABZR88_RS13630 0.74 -0.3 3,409,972 + ABZR88_RS13630 0.82 -0.0 3,409,972 + ABZR88_RS13630 0.82 -0.1 3,410,051 + -0.3 3,410,055 - +0.0 3,410,067 - -0.0 3,410,067 - +0.1 3,410,078 + -0.1 3,410,078 + +0.1 3,410,079 - -0.1 3,410,132 + -0.7 3,410,224 + +0.1 3,410,228 + -0.0 3,410,229 - -0.6 3,410,359 + -0.1 3,410,360 - -1.0 3,410,405 + +0.0 3,410,525 + ABZR88_RS13635 0.25 -0.3 3,410,542 - ABZR88_RS13635 0.28 -0.5 3,410,620 + ABZR88_RS13635 0.43 +0.1 3,410,621 - ABZR88_RS13635 0.43 -0.0 3,410,736 + ABZR88_RS13635 0.65 +0.0 3,410,739 - ABZR88_RS13635 0.65 -0.7 3,410,855 - ABZR88_RS13635 0.87 -0.0 3,410,860 - ABZR88_RS13635 0.88 +0.3 3,410,882 + -0.0 3,411,023 - -0.1
Or see this region's nucleotide sequence