Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13240 and ABZR88_RS13245 are separated by 152 nucleotides ABZR88_RS13245 and ABZR88_RS13250 are separated by 219 nucleotides ABZR88_RS13250 and ABZR88_RS13255 are separated by 25 nucleotides
ABZR88_RS13240: ABZR88_RS13240 - hypothetical protein, at 3,280,160 to 3,280,963
_RS13240
ABZR88_RS13245: ABZR88_RS13245 - alkaline phosphatase family protein, at 3,281,116 to 3,283,812
_RS13245
ABZR88_RS13250: ABZR88_RS13250 - hypothetical protein, at 3,284,032 to 3,284,205
_RS13250
ABZR88_RS13255: ABZR88_RS13255 - hypothetical protein, at 3,284,231 to 3,285,007
_RS13255
Position (kb)
3281
3282
3283
3284 Strain fitness (log2 ratio)
-1
0
1 at 3280.309 kb on - strand, within ABZR88_RS13240 at 3280.565 kb on + strand, within ABZR88_RS13240 at 3280.688 kb on + strand, within ABZR88_RS13240 at 3280.887 kb on + strand at 3280.902 kb on - strand at 3280.986 kb on + strand at 3280.987 kb on - strand at 3281.076 kb on + strand at 3281.081 kb on + strand at 3281.101 kb on + strand at 3281.186 kb on + strand at 3281.264 kb on + strand at 3281.267 kb on + strand at 3281.376 kb on + strand at 3281.697 kb on + strand, within ABZR88_RS13245 at 3281.734 kb on + strand, within ABZR88_RS13245 at 3281.866 kb on - strand, within ABZR88_RS13245 at 3281.868 kb on + strand, within ABZR88_RS13245 at 3281.869 kb on - strand, within ABZR88_RS13245 at 3281.946 kb on - strand, within ABZR88_RS13245 at 3282.030 kb on - strand, within ABZR88_RS13245 at 3282.031 kb on + strand, within ABZR88_RS13245 at 3282.155 kb on - strand, within ABZR88_RS13245 at 3282.159 kb on - strand, within ABZR88_RS13245 at 3282.159 kb on - strand, within ABZR88_RS13245 at 3282.191 kb on - strand, within ABZR88_RS13245 at 3282.243 kb on + strand, within ABZR88_RS13245 at 3282.281 kb on + strand, within ABZR88_RS13245 at 3282.281 kb on + strand, within ABZR88_RS13245 at 3282.282 kb on - strand, within ABZR88_RS13245 at 3282.340 kb on - strand, within ABZR88_RS13245 at 3282.464 kb on - strand, within ABZR88_RS13245 at 3282.469 kb on - strand, within ABZR88_RS13245 at 3282.474 kb on + strand, within ABZR88_RS13245 at 3282.526 kb on - strand, within ABZR88_RS13245 at 3282.603 kb on + strand, within ABZR88_RS13245 at 3282.718 kb on + strand, within ABZR88_RS13245 at 3282.875 kb on - strand, within ABZR88_RS13245 at 3282.909 kb on + strand, within ABZR88_RS13245 at 3282.991 kb on - strand, within ABZR88_RS13245 at 3283.398 kb on + strand, within ABZR88_RS13245 at 3283.399 kb on - strand, within ABZR88_RS13245 at 3283.509 kb on + strand, within ABZR88_RS13245 at 3283.599 kb on + strand at 3283.641 kb on + strand at 3283.643 kb on + strand at 3283.704 kb on + strand at 3283.734 kb on + strand at 3283.834 kb on - strand at 3283.914 kb on + strand at 3283.914 kb on + strand at 3283.916 kb on + strand at 3284.098 kb on + strand, within ABZR88_RS13250 at 3284.207 kb on - strand at 3284.211 kb on - strand at 3284.211 kb on - strand at 3284.211 kb on - strand at 3284.255 kb on + strand at 3284.341 kb on - strand, within ABZR88_RS13255 at 3284.395 kb on + strand, within ABZR88_RS13255 at 3284.396 kb on - strand, within ABZR88_RS13255 at 3284.397 kb on + strand, within ABZR88_RS13255 at 3284.541 kb on + strand, within ABZR88_RS13255 at 3284.618 kb on - strand, within ABZR88_RS13255 at 3284.679 kb on - strand, within ABZR88_RS13255 at 3284.740 kb on - strand, within ABZR88_RS13255
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,280,309 - ABZR88_RS13240 0.19 -0.2 3,280,565 + ABZR88_RS13240 0.50 -0.3 3,280,688 + ABZR88_RS13240 0.66 -0.4 3,280,887 + -1.0 3,280,902 - +0.8 3,280,986 + -0.3 3,280,987 - +0.1 3,281,076 + +0.1 3,281,081 + -0.1 3,281,101 + -0.3 3,281,186 + -0.1 3,281,264 + +0.2 3,281,267 + +0.3 3,281,376 + -0.1 3,281,697 + ABZR88_RS13245 0.22 -0.0 3,281,734 + ABZR88_RS13245 0.23 -0.3 3,281,866 - ABZR88_RS13245 0.28 -0.3 3,281,868 + ABZR88_RS13245 0.28 -0.2 3,281,869 - ABZR88_RS13245 0.28 -0.2 3,281,946 - ABZR88_RS13245 0.31 -0.0 3,282,030 - ABZR88_RS13245 0.34 -0.1 3,282,031 + ABZR88_RS13245 0.34 -0.0 3,282,155 - ABZR88_RS13245 0.39 -0.2 3,282,159 - ABZR88_RS13245 0.39 -0.1 3,282,159 - ABZR88_RS13245 0.39 -0.0 3,282,191 - ABZR88_RS13245 0.40 -0.1 3,282,243 + ABZR88_RS13245 0.42 -0.1 3,282,281 + ABZR88_RS13245 0.43 -1.3 3,282,281 + ABZR88_RS13245 0.43 +0.5 3,282,282 - ABZR88_RS13245 0.43 +0.0 3,282,340 - ABZR88_RS13245 0.45 -0.3 3,282,464 - ABZR88_RS13245 0.50 -0.3 3,282,469 - ABZR88_RS13245 0.50 -0.0 3,282,474 + ABZR88_RS13245 0.50 -0.5 3,282,526 - ABZR88_RS13245 0.52 -0.4 3,282,603 + ABZR88_RS13245 0.55 +0.8 3,282,718 + ABZR88_RS13245 0.59 -0.0 3,282,875 - ABZR88_RS13245 0.65 -0.1 3,282,909 + ABZR88_RS13245 0.66 +0.6 3,282,991 - ABZR88_RS13245 0.70 -0.3 3,283,398 + ABZR88_RS13245 0.85 -0.3 3,283,399 - ABZR88_RS13245 0.85 -0.9 3,283,509 + ABZR88_RS13245 0.89 -0.7 3,283,599 + -0.8 3,283,641 + -1.0 3,283,643 + +0.2 3,283,704 + +0.1 3,283,734 + -0.3 3,283,834 - +0.1 3,283,914 + -0.5 3,283,914 + -0.4 3,283,916 + -0.1 3,284,098 + ABZR88_RS13250 0.38 -0.1 3,284,207 - +0.2 3,284,211 - +1.0 3,284,211 - -0.1 3,284,211 - -0.1 3,284,255 + +0.2 3,284,341 - ABZR88_RS13255 0.14 +0.1 3,284,395 + ABZR88_RS13255 0.21 -0.3 3,284,396 - ABZR88_RS13255 0.21 +0.1 3,284,397 + ABZR88_RS13255 0.21 -0.2 3,284,541 + ABZR88_RS13255 0.40 -0.6 3,284,618 - ABZR88_RS13255 0.50 +0.3 3,284,679 - ABZR88_RS13255 0.58 +0.0 3,284,740 - ABZR88_RS13255 0.66 +0.2
Or see this region's nucleotide sequence