Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13245

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13240 and ABZR88_RS13245 are separated by 152 nucleotidesABZR88_RS13245 and ABZR88_RS13250 are separated by 219 nucleotidesABZR88_RS13250 and ABZR88_RS13255 are separated by 25 nucleotides ABZR88_RS13240: ABZR88_RS13240 - hypothetical protein, at 3,280,160 to 3,280,963 _RS13240 ABZR88_RS13245: ABZR88_RS13245 - alkaline phosphatase family protein, at 3,281,116 to 3,283,812 _RS13245 ABZR88_RS13250: ABZR88_RS13250 - hypothetical protein, at 3,284,032 to 3,284,205 _RS13250 ABZR88_RS13255: ABZR88_RS13255 - hypothetical protein, at 3,284,231 to 3,285,007 _RS13255 Position (kb) 3281 3282 3283 3284Strain fitness (log2 ratio) -1 0 1at 3280.309 kb on - strand, within ABZR88_RS13240at 3280.565 kb on + strand, within ABZR88_RS13240at 3280.688 kb on + strand, within ABZR88_RS13240at 3280.887 kb on + strandat 3280.902 kb on - strandat 3280.986 kb on + strandat 3280.987 kb on - strandat 3281.076 kb on + strandat 3281.081 kb on + strandat 3281.101 kb on + strandat 3281.186 kb on + strandat 3281.264 kb on + strandat 3281.267 kb on + strandat 3281.376 kb on + strandat 3281.697 kb on + strand, within ABZR88_RS13245at 3281.734 kb on + strand, within ABZR88_RS13245at 3281.866 kb on - strand, within ABZR88_RS13245at 3281.868 kb on + strand, within ABZR88_RS13245at 3281.869 kb on - strand, within ABZR88_RS13245at 3281.946 kb on - strand, within ABZR88_RS13245at 3282.030 kb on - strand, within ABZR88_RS13245at 3282.031 kb on + strand, within ABZR88_RS13245at 3282.155 kb on - strand, within ABZR88_RS13245at 3282.159 kb on - strand, within ABZR88_RS13245at 3282.159 kb on - strand, within ABZR88_RS13245at 3282.191 kb on - strand, within ABZR88_RS13245at 3282.243 kb on + strand, within ABZR88_RS13245at 3282.281 kb on + strand, within ABZR88_RS13245at 3282.281 kb on + strand, within ABZR88_RS13245at 3282.282 kb on - strand, within ABZR88_RS13245at 3282.340 kb on - strand, within ABZR88_RS13245at 3282.464 kb on - strand, within ABZR88_RS13245at 3282.469 kb on - strand, within ABZR88_RS13245at 3282.474 kb on + strand, within ABZR88_RS13245at 3282.526 kb on - strand, within ABZR88_RS13245at 3282.603 kb on + strand, within ABZR88_RS13245at 3282.718 kb on + strand, within ABZR88_RS13245at 3282.875 kb on - strand, within ABZR88_RS13245at 3282.909 kb on + strand, within ABZR88_RS13245at 3282.991 kb on - strand, within ABZR88_RS13245at 3283.398 kb on + strand, within ABZR88_RS13245at 3283.399 kb on - strand, within ABZR88_RS13245at 3283.509 kb on + strand, within ABZR88_RS13245at 3283.599 kb on + strandat 3283.641 kb on + strandat 3283.643 kb on + strandat 3283.704 kb on + strandat 3283.734 kb on + strandat 3283.834 kb on - strandat 3283.914 kb on + strandat 3283.914 kb on + strandat 3283.916 kb on + strandat 3284.098 kb on + strand, within ABZR88_RS13250at 3284.207 kb on - strandat 3284.211 kb on - strandat 3284.211 kb on - strandat 3284.211 kb on - strandat 3284.255 kb on + strandat 3284.341 kb on - strand, within ABZR88_RS13255at 3284.395 kb on + strand, within ABZR88_RS13255at 3284.396 kb on - strand, within ABZR88_RS13255at 3284.397 kb on + strand, within ABZR88_RS13255at 3284.541 kb on + strand, within ABZR88_RS13255at 3284.618 kb on - strand, within ABZR88_RS13255at 3284.679 kb on - strand, within ABZR88_RS13255at 3284.740 kb on - strand, within ABZR88_RS13255

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,280,309 - ABZR88_RS13240 0.19 -0.2
3,280,565 + ABZR88_RS13240 0.50 -0.3
3,280,688 + ABZR88_RS13240 0.66 -0.4
3,280,887 + -1.0
3,280,902 - +0.8
3,280,986 + -0.3
3,280,987 - +0.1
3,281,076 + +0.1
3,281,081 + -0.1
3,281,101 + -0.3
3,281,186 + -0.1
3,281,264 + +0.2
3,281,267 + +0.3
3,281,376 + -0.1
3,281,697 + ABZR88_RS13245 0.22 -0.0
3,281,734 + ABZR88_RS13245 0.23 -0.3
3,281,866 - ABZR88_RS13245 0.28 -0.3
3,281,868 + ABZR88_RS13245 0.28 -0.2
3,281,869 - ABZR88_RS13245 0.28 -0.2
3,281,946 - ABZR88_RS13245 0.31 -0.0
3,282,030 - ABZR88_RS13245 0.34 -0.1
3,282,031 + ABZR88_RS13245 0.34 -0.0
3,282,155 - ABZR88_RS13245 0.39 -0.2
3,282,159 - ABZR88_RS13245 0.39 -0.1
3,282,159 - ABZR88_RS13245 0.39 -0.0
3,282,191 - ABZR88_RS13245 0.40 -0.1
3,282,243 + ABZR88_RS13245 0.42 -0.1
3,282,281 + ABZR88_RS13245 0.43 -1.3
3,282,281 + ABZR88_RS13245 0.43 +0.5
3,282,282 - ABZR88_RS13245 0.43 +0.0
3,282,340 - ABZR88_RS13245 0.45 -0.3
3,282,464 - ABZR88_RS13245 0.50 -0.3
3,282,469 - ABZR88_RS13245 0.50 -0.0
3,282,474 + ABZR88_RS13245 0.50 -0.5
3,282,526 - ABZR88_RS13245 0.52 -0.4
3,282,603 + ABZR88_RS13245 0.55 +0.8
3,282,718 + ABZR88_RS13245 0.59 -0.0
3,282,875 - ABZR88_RS13245 0.65 -0.1
3,282,909 + ABZR88_RS13245 0.66 +0.6
3,282,991 - ABZR88_RS13245 0.70 -0.3
3,283,398 + ABZR88_RS13245 0.85 -0.3
3,283,399 - ABZR88_RS13245 0.85 -0.9
3,283,509 + ABZR88_RS13245 0.89 -0.7
3,283,599 + -0.8
3,283,641 + -1.0
3,283,643 + +0.2
3,283,704 + +0.1
3,283,734 + -0.3
3,283,834 - +0.1
3,283,914 + -0.5
3,283,914 + -0.4
3,283,916 + -0.1
3,284,098 + ABZR88_RS13250 0.38 -0.1
3,284,207 - +0.2
3,284,211 - +1.0
3,284,211 - -0.1
3,284,211 - -0.1
3,284,255 + +0.2
3,284,341 - ABZR88_RS13255 0.14 +0.1
3,284,395 + ABZR88_RS13255 0.21 -0.3
3,284,396 - ABZR88_RS13255 0.21 +0.1
3,284,397 + ABZR88_RS13255 0.21 -0.2
3,284,541 + ABZR88_RS13255 0.40 -0.6
3,284,618 - ABZR88_RS13255 0.50 +0.3
3,284,679 - ABZR88_RS13255 0.58 +0.0
3,284,740 - ABZR88_RS13255 0.66 +0.2

Or see this region's nucleotide sequence