Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08945

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS08935 and ABZR88_RS08940 are separated by 17 nucleotidesABZR88_RS08940 and ABZR88_RS08945 are separated by 1 nucleotidesABZR88_RS08945 and ABZR88_RS08950 are separated by 12 nucleotidesABZR88_RS08950 and ABZR88_RS08955 are separated by 47 nucleotides ABZR88_RS08935: ABZR88_RS08935 - O-antigen ligase, at 2,248,083 to 2,249,327 _RS08935 ABZR88_RS08940: ABZR88_RS08940 - sugar transferase, at 2,249,345 to 2,249,941 _RS08940 ABZR88_RS08945: ABZR88_RS08945 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 2,249,943 to 2,251,214 _RS08945 ABZR88_RS08950: ABZR88_RS08950 - DUF2334 domain-containing protein, at 2,251,227 to 2,252,003 _RS08950 ABZR88_RS08955: ABZR88_RS08955 - glycosyltransferase family 4 protein, at 2,252,051 to 2,253,121 _RS08955 Position (kb) 2249 2250 2251 2252Strain fitness (log2 ratio) -1 0 1at 2248.952 kb on + strand, within ABZR88_RS08935at 2249.140 kb on - strand, within ABZR88_RS08935at 2249.338 kb on - strandat 2249.376 kb on - strandat 2249.468 kb on - strand, within ABZR88_RS08940at 2249.536 kb on + strand, within ABZR88_RS08940at 2249.904 kb on - strandat 2250.042 kb on - strandat 2250.055 kb on + strandat 2250.113 kb on - strand, within ABZR88_RS08945at 2250.139 kb on + strand, within ABZR88_RS08945at 2250.216 kb on - strand, within ABZR88_RS08945at 2250.352 kb on + strand, within ABZR88_RS08945at 2250.570 kb on - strand, within ABZR88_RS08945at 2250.596 kb on + strand, within ABZR88_RS08945at 2250.597 kb on - strand, within ABZR88_RS08945at 2250.651 kb on + strand, within ABZR88_RS08945at 2250.651 kb on + strand, within ABZR88_RS08945at 2250.718 kb on - strand, within ABZR88_RS08945at 2250.794 kb on + strand, within ABZR88_RS08945at 2250.993 kb on + strand, within ABZR88_RS08945at 2251.066 kb on - strand, within ABZR88_RS08945at 2251.451 kb on - strand, within ABZR88_RS08950at 2251.454 kb on + strand, within ABZR88_RS08950at 2251.655 kb on + strand, within ABZR88_RS08950at 2251.907 kb on + strand, within ABZR88_RS08950at 2251.993 kb on + strandat 2252.013 kb on - strandat 2252.020 kb on + strandat 2252.024 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
2,248,952 + ABZR88_RS08935 0.70 +0.6
2,249,140 - ABZR88_RS08935 0.85 -0.2
2,249,338 - +0.1
2,249,376 - -0.0
2,249,468 - ABZR88_RS08940 0.21 -0.3
2,249,536 + ABZR88_RS08940 0.32 -0.5
2,249,904 - -0.1
2,250,042 - +0.5
2,250,055 + -0.2
2,250,113 - ABZR88_RS08945 0.13 +0.0
2,250,139 + ABZR88_RS08945 0.15 -0.6
2,250,216 - ABZR88_RS08945 0.21 +0.5
2,250,352 + ABZR88_RS08945 0.32 +0.3
2,250,570 - ABZR88_RS08945 0.49 -0.4
2,250,596 + ABZR88_RS08945 0.51 +0.2
2,250,597 - ABZR88_RS08945 0.51 -0.2
2,250,651 + ABZR88_RS08945 0.56 +0.1
2,250,651 + ABZR88_RS08945 0.56 -0.4
2,250,718 - ABZR88_RS08945 0.61 +0.2
2,250,794 + ABZR88_RS08945 0.67 +0.1
2,250,993 + ABZR88_RS08945 0.83 +0.0
2,251,066 - ABZR88_RS08945 0.88 +0.1
2,251,451 - ABZR88_RS08950 0.29 -0.3
2,251,454 + ABZR88_RS08950 0.29 -0.1
2,251,655 + ABZR88_RS08950 0.55 -0.2
2,251,907 + ABZR88_RS08950 0.88 -0.1
2,251,993 + -0.3
2,252,013 - +0.0
2,252,020 + -0.1
2,252,024 - -0.1

Or see this region's nucleotide sequence