Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08935 and ABZR88_RS08940 are separated by 17 nucleotides ABZR88_RS08940 and ABZR88_RS08945 are separated by 1 nucleotides ABZR88_RS08945 and ABZR88_RS08950 are separated by 12 nucleotides ABZR88_RS08950 and ABZR88_RS08955 are separated by 47 nucleotides
ABZR88_RS08935: ABZR88_RS08935 - O-antigen ligase, at 2,248,083 to 2,249,327
_RS08935
ABZR88_RS08940: ABZR88_RS08940 - sugar transferase, at 2,249,345 to 2,249,941
_RS08940
ABZR88_RS08945: ABZR88_RS08945 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 2,249,943 to 2,251,214
_RS08945
ABZR88_RS08950: ABZR88_RS08950 - DUF2334 domain-containing protein, at 2,251,227 to 2,252,003
_RS08950
ABZR88_RS08955: ABZR88_RS08955 - glycosyltransferase family 4 protein, at 2,252,051 to 2,253,121
_RS08955
Position (kb)
2249
2250
2251
2252 Strain fitness (log2 ratio)
-1
0
1 at 2248.952 kb on + strand, within ABZR88_RS08935 at 2249.140 kb on - strand, within ABZR88_RS08935 at 2249.338 kb on - strand at 2249.376 kb on - strand at 2249.468 kb on - strand, within ABZR88_RS08940 at 2249.536 kb on + strand, within ABZR88_RS08940 at 2249.904 kb on - strand at 2250.042 kb on - strand at 2250.055 kb on + strand at 2250.113 kb on - strand, within ABZR88_RS08945 at 2250.139 kb on + strand, within ABZR88_RS08945 at 2250.216 kb on - strand, within ABZR88_RS08945 at 2250.352 kb on + strand, within ABZR88_RS08945 at 2250.570 kb on - strand, within ABZR88_RS08945 at 2250.596 kb on + strand, within ABZR88_RS08945 at 2250.597 kb on - strand, within ABZR88_RS08945 at 2250.651 kb on + strand, within ABZR88_RS08945 at 2250.651 kb on + strand, within ABZR88_RS08945 at 2250.718 kb on - strand, within ABZR88_RS08945 at 2250.794 kb on + strand, within ABZR88_RS08945 at 2250.993 kb on + strand, within ABZR88_RS08945 at 2251.066 kb on - strand, within ABZR88_RS08945 at 2251.451 kb on - strand, within ABZR88_RS08950 at 2251.454 kb on + strand, within ABZR88_RS08950 at 2251.655 kb on + strand, within ABZR88_RS08950 at 2251.907 kb on + strand, within ABZR88_RS08950 at 2251.993 kb on + strand at 2252.013 kb on - strand at 2252.020 kb on + strand at 2252.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 2,248,952 + ABZR88_RS08935 0.70 +0.6 2,249,140 - ABZR88_RS08935 0.85 -0.2 2,249,338 - +0.1 2,249,376 - -0.0 2,249,468 - ABZR88_RS08940 0.21 -0.3 2,249,536 + ABZR88_RS08940 0.32 -0.5 2,249,904 - -0.1 2,250,042 - +0.5 2,250,055 + -0.2 2,250,113 - ABZR88_RS08945 0.13 +0.0 2,250,139 + ABZR88_RS08945 0.15 -0.6 2,250,216 - ABZR88_RS08945 0.21 +0.5 2,250,352 + ABZR88_RS08945 0.32 +0.3 2,250,570 - ABZR88_RS08945 0.49 -0.4 2,250,596 + ABZR88_RS08945 0.51 +0.2 2,250,597 - ABZR88_RS08945 0.51 -0.2 2,250,651 + ABZR88_RS08945 0.56 +0.1 2,250,651 + ABZR88_RS08945 0.56 -0.4 2,250,718 - ABZR88_RS08945 0.61 +0.2 2,250,794 + ABZR88_RS08945 0.67 +0.1 2,250,993 + ABZR88_RS08945 0.83 +0.0 2,251,066 - ABZR88_RS08945 0.88 +0.1 2,251,451 - ABZR88_RS08950 0.29 -0.3 2,251,454 + ABZR88_RS08950 0.29 -0.1 2,251,655 + ABZR88_RS08950 0.55 -0.2 2,251,907 + ABZR88_RS08950 0.88 -0.1 2,251,993 + -0.3 2,252,013 - +0.0 2,252,020 + -0.1 2,252,024 - -0.1
Or see this region's nucleotide sequence