Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06030

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06025 and ABZR88_RS06030 are separated by 42 nucleotidesABZR88_RS06030 and ABZR88_RS06035 are separated by 14 nucleotides ABZR88_RS06025: ABZR88_RS06025 - fasciclin domain-containing protein, at 1,471,718 to 1,473,451 _RS06025 ABZR88_RS06030: ABZR88_RS06030 - fasciclin domain-containing protein, at 1,473,494 to 1,475,068 _RS06030 ABZR88_RS06035: ABZR88_RS06035 - SusC/RagA family TonB-linked outer membrane protein, at 1,475,083 to 1,478,313 _RS06035 Position (kb) 1473 1474 1475 1476Strain fitness (log2 ratio) -1 0 1at 1472.517 kb on + strand, within ABZR88_RS06025at 1472.637 kb on + strand, within ABZR88_RS06025at 1472.654 kb on - strand, within ABZR88_RS06025at 1472.670 kb on + strand, within ABZR88_RS06025at 1472.730 kb on + strand, within ABZR88_RS06025at 1472.750 kb on + strand, within ABZR88_RS06025at 1472.752 kb on + strand, within ABZR88_RS06025at 1472.753 kb on - strand, within ABZR88_RS06025at 1472.858 kb on - strand, within ABZR88_RS06025at 1472.966 kb on - strand, within ABZR88_RS06025at 1472.976 kb on - strand, within ABZR88_RS06025at 1473.003 kb on + strand, within ABZR88_RS06025at 1473.004 kb on - strand, within ABZR88_RS06025at 1473.120 kb on + strand, within ABZR88_RS06025at 1473.344 kb on - strandat 1473.344 kb on - strandat 1473.457 kb on + strandat 1473.458 kb on - strandat 1473.458 kb on - strandat 1473.580 kb on + strandat 1473.610 kb on + strandat 1473.650 kb on - strandat 1473.822 kb on - strand, within ABZR88_RS06030at 1473.914 kb on - strand, within ABZR88_RS06030at 1473.916 kb on + strand, within ABZR88_RS06030at 1473.933 kb on - strand, within ABZR88_RS06030at 1473.938 kb on - strand, within ABZR88_RS06030at 1474.064 kb on + strand, within ABZR88_RS06030at 1474.072 kb on + strand, within ABZR88_RS06030at 1474.073 kb on - strand, within ABZR88_RS06030at 1474.204 kb on + strand, within ABZR88_RS06030at 1474.209 kb on - strand, within ABZR88_RS06030at 1474.259 kb on - strand, within ABZR88_RS06030at 1474.458 kb on - strand, within ABZR88_RS06030at 1474.458 kb on - strand, within ABZR88_RS06030at 1474.679 kb on - strand, within ABZR88_RS06030at 1474.735 kb on + strand, within ABZR88_RS06030at 1474.782 kb on + strand, within ABZR88_RS06030at 1474.845 kb on - strand, within ABZR88_RS06030at 1474.874 kb on + strand, within ABZR88_RS06030at 1474.978 kb on + strandat 1474.981 kb on + strandat 1475.045 kb on - strandat 1475.218 kb on - strandat 1475.218 kb on - strandat 1475.621 kb on + strand, within ABZR88_RS06035at 1475.727 kb on + strand, within ABZR88_RS06035at 1475.755 kb on - strand, within ABZR88_RS06035at 1475.850 kb on + strand, within ABZR88_RS06035at 1475.851 kb on - strand, within ABZR88_RS06035at 1475.855 kb on - strand, within ABZR88_RS06035at 1476.027 kb on + strand, within ABZR88_RS06035at 1476.027 kb on + strand, within ABZR88_RS06035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,472,517 + ABZR88_RS06025 0.46 +0.1
1,472,637 + ABZR88_RS06025 0.53 +0.1
1,472,654 - ABZR88_RS06025 0.54 -0.2
1,472,670 + ABZR88_RS06025 0.55 +0.3
1,472,730 + ABZR88_RS06025 0.58 -0.3
1,472,750 + ABZR88_RS06025 0.60 +0.1
1,472,752 + ABZR88_RS06025 0.60 +0.1
1,472,753 - ABZR88_RS06025 0.60 +0.0
1,472,858 - ABZR88_RS06025 0.66 -0.2
1,472,966 - ABZR88_RS06025 0.72 -0.1
1,472,976 - ABZR88_RS06025 0.73 -0.1
1,473,003 + ABZR88_RS06025 0.74 +0.1
1,473,004 - ABZR88_RS06025 0.74 +0.3
1,473,120 + ABZR88_RS06025 0.81 +0.4
1,473,344 - -0.9
1,473,344 - +0.7
1,473,457 + +0.3
1,473,458 - -0.3
1,473,458 - +0.1
1,473,580 + -0.5
1,473,610 + +0.3
1,473,650 - -0.1
1,473,822 - ABZR88_RS06030 0.21 -0.2
1,473,914 - ABZR88_RS06030 0.27 -0.1
1,473,916 + ABZR88_RS06030 0.27 -0.1
1,473,933 - ABZR88_RS06030 0.28 -0.1
1,473,938 - ABZR88_RS06030 0.28 -0.2
1,474,064 + ABZR88_RS06030 0.36 -1.3
1,474,072 + ABZR88_RS06030 0.37 +1.2
1,474,073 - ABZR88_RS06030 0.37 -0.1
1,474,204 + ABZR88_RS06030 0.45 +0.1
1,474,209 - ABZR88_RS06030 0.45 +0.1
1,474,259 - ABZR88_RS06030 0.49 -0.2
1,474,458 - ABZR88_RS06030 0.61 -0.3
1,474,458 - ABZR88_RS06030 0.61 +0.1
1,474,679 - ABZR88_RS06030 0.75 -0.1
1,474,735 + ABZR88_RS06030 0.79 +0.1
1,474,782 + ABZR88_RS06030 0.82 +0.2
1,474,845 - ABZR88_RS06030 0.86 -0.0
1,474,874 + ABZR88_RS06030 0.88 +0.2
1,474,978 + +0.2
1,474,981 + +0.1
1,475,045 - -0.1
1,475,218 - -0.4
1,475,218 - +0.1
1,475,621 + ABZR88_RS06035 0.17 +0.1
1,475,727 + ABZR88_RS06035 0.20 -0.2
1,475,755 - ABZR88_RS06035 0.21 -0.3
1,475,850 + ABZR88_RS06035 0.24 -0.1
1,475,851 - ABZR88_RS06035 0.24 -0.0
1,475,855 - ABZR88_RS06035 0.24 -0.2
1,476,027 + ABZR88_RS06035 0.29 +0.1
1,476,027 + ABZR88_RS06035 0.29 -0.0

Or see this region's nucleotide sequence