Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08740

Experiment: Melibiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08735 and ABZR88_RS08740 are separated by 250 nucleotidesABZR88_RS08740 and ABZR88_RS08745 are separated by 31 nucleotides ABZR88_RS08735: ABZR88_RS08735 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,187,898 to 2,190,270 _RS08735 ABZR88_RS08740: ABZR88_RS08740 - helix-turn-helix domain-containing protein, at 2,190,521 to 2,190,757 _RS08740 ABZR88_RS08745: ABZR88_RS08745 - DUF5107 domain-containing protein, at 2,190,789 to 2,194,097 _RS08745 Position (kb) 2190 2191Strain fitness (log2 ratio) -2 -1 0 1 2at 2189.586 kb on + strand, within ABZR88_RS08735at 2189.587 kb on - strand, within ABZR88_RS08735at 2189.652 kb on - strand, within ABZR88_RS08735at 2189.783 kb on - strand, within ABZR88_RS08735at 2189.807 kb on + strand, within ABZR88_RS08735at 2189.833 kb on + strand, within ABZR88_RS08735at 2189.920 kb on - strand, within ABZR88_RS08735at 2189.922 kb on + strand, within ABZR88_RS08735at 2190.024 kb on - strand, within ABZR88_RS08735at 2190.030 kb on - strand, within ABZR88_RS08735at 2190.089 kb on - strandat 2190.089 kb on - strandat 2190.161 kb on + strandat 2190.161 kb on + strandat 2190.162 kb on - strandat 2190.162 kb on - strandat 2190.225 kb on + strandat 2190.507 kb on - strandat 2190.537 kb on + strandat 2190.636 kb on + strand, within ABZR88_RS08740at 2190.668 kb on + strand, within ABZR88_RS08740at 2190.763 kb on + strandat 2190.764 kb on - strandat 2190.769 kb on - strandat 2190.841 kb on - strandat 2190.905 kb on + strandat 2190.907 kb on + strandat 2190.951 kb on + strandat 2190.958 kb on - strandat 2190.958 kb on - strandat 2191.038 kb on - strandat 2191.160 kb on + strand, within ABZR88_RS08745at 2191.187 kb on + strand, within ABZR88_RS08745at 2191.187 kb on + strand, within ABZR88_RS08745at 2191.187 kb on + strand, within ABZR88_RS08745at 2191.329 kb on - strand, within ABZR88_RS08745at 2191.370 kb on - strand, within ABZR88_RS08745at 2191.464 kb on - strand, within ABZR88_RS08745at 2191.737 kb on + strand, within ABZR88_RS08745

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C)
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2,189,586 + ABZR88_RS08735 0.71 -0.7
2,189,587 - ABZR88_RS08735 0.71 -0.2
2,189,652 - ABZR88_RS08735 0.74 -0.1
2,189,783 - ABZR88_RS08735 0.79 -0.4
2,189,807 + ABZR88_RS08735 0.80 +0.1
2,189,833 + ABZR88_RS08735 0.82 -0.0
2,189,920 - ABZR88_RS08735 0.85 -1.9
2,189,922 + ABZR88_RS08735 0.85 -0.8
2,190,024 - ABZR88_RS08735 0.90 -0.1
2,190,030 - ABZR88_RS08735 0.90 +1.1
2,190,089 - -0.1
2,190,089 - -0.4
2,190,161 + -0.3
2,190,161 + -0.7
2,190,162 - +0.1
2,190,162 - -0.1
2,190,225 + -0.0
2,190,507 - -0.1
2,190,537 + +1.5
2,190,636 + ABZR88_RS08740 0.49 +0.7
2,190,668 + ABZR88_RS08740 0.62 +0.1
2,190,763 + -0.1
2,190,764 - +0.1
2,190,769 - +0.1
2,190,841 - +0.2
2,190,905 + -0.1
2,190,907 + -0.4
2,190,951 + +0.2
2,190,958 - -0.0
2,190,958 - +0.1
2,191,038 - -0.2
2,191,160 + ABZR88_RS08745 0.11 +0.1
2,191,187 + ABZR88_RS08745 0.12 +0.2
2,191,187 + ABZR88_RS08745 0.12 -0.2
2,191,187 + ABZR88_RS08745 0.12 +0.4
2,191,329 - ABZR88_RS08745 0.16 -0.1
2,191,370 - ABZR88_RS08745 0.18 +0.0
2,191,464 - ABZR88_RS08745 0.20 -0.2
2,191,737 + ABZR88_RS08745 0.29 +2.3

Or see this region's nucleotide sequence