Experiment: Melibiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08735 and ABZR88_RS08740 are separated by 250 nucleotides ABZR88_RS08740 and ABZR88_RS08745 are separated by 31 nucleotides
ABZR88_RS08735: ABZR88_RS08735 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,187,898 to 2,190,270
_RS08735
ABZR88_RS08740: ABZR88_RS08740 - helix-turn-helix domain-containing protein, at 2,190,521 to 2,190,757
_RS08740
ABZR88_RS08745: ABZR88_RS08745 - DUF5107 domain-containing protein, at 2,190,789 to 2,194,097
_RS08745
Position (kb)
2190
2191 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2189.586 kb on + strand, within ABZR88_RS08735 at 2189.587 kb on - strand, within ABZR88_RS08735 at 2189.652 kb on - strand, within ABZR88_RS08735 at 2189.783 kb on - strand, within ABZR88_RS08735 at 2189.807 kb on + strand, within ABZR88_RS08735 at 2189.833 kb on + strand, within ABZR88_RS08735 at 2189.920 kb on - strand, within ABZR88_RS08735 at 2189.922 kb on + strand, within ABZR88_RS08735 at 2190.024 kb on - strand, within ABZR88_RS08735 at 2190.030 kb on - strand, within ABZR88_RS08735 at 2190.089 kb on - strand at 2190.089 kb on - strand at 2190.161 kb on + strand at 2190.161 kb on + strand at 2190.162 kb on - strand at 2190.162 kb on - strand at 2190.225 kb on + strand at 2190.507 kb on - strand at 2190.537 kb on + strand at 2190.636 kb on + strand, within ABZR88_RS08740 at 2190.668 kb on + strand, within ABZR88_RS08740 at 2190.763 kb on + strand at 2190.764 kb on - strand at 2190.769 kb on - strand at 2190.841 kb on - strand at 2190.905 kb on + strand at 2190.907 kb on + strand at 2190.951 kb on + strand at 2190.958 kb on - strand at 2190.958 kb on - strand at 2191.038 kb on - strand at 2191.160 kb on + strand, within ABZR88_RS08745 at 2191.187 kb on + strand, within ABZR88_RS08745 at 2191.187 kb on + strand, within ABZR88_RS08745 at 2191.187 kb on + strand, within ABZR88_RS08745 at 2191.329 kb on - strand, within ABZR88_RS08745 at 2191.370 kb on - strand, within ABZR88_RS08745 at 2191.464 kb on - strand, within ABZR88_RS08745 at 2191.737 kb on + strand, within ABZR88_RS08745
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C) remove 2,189,586 + ABZR88_RS08735 0.71 -0.7 2,189,587 - ABZR88_RS08735 0.71 -0.2 2,189,652 - ABZR88_RS08735 0.74 -0.1 2,189,783 - ABZR88_RS08735 0.79 -0.4 2,189,807 + ABZR88_RS08735 0.80 +0.1 2,189,833 + ABZR88_RS08735 0.82 -0.0 2,189,920 - ABZR88_RS08735 0.85 -1.9 2,189,922 + ABZR88_RS08735 0.85 -0.8 2,190,024 - ABZR88_RS08735 0.90 -0.1 2,190,030 - ABZR88_RS08735 0.90 +1.1 2,190,089 - -0.1 2,190,089 - -0.4 2,190,161 + -0.3 2,190,161 + -0.7 2,190,162 - +0.1 2,190,162 - -0.1 2,190,225 + -0.0 2,190,507 - -0.1 2,190,537 + +1.5 2,190,636 + ABZR88_RS08740 0.49 +0.7 2,190,668 + ABZR88_RS08740 0.62 +0.1 2,190,763 + -0.1 2,190,764 - +0.1 2,190,769 - +0.1 2,190,841 - +0.2 2,190,905 + -0.1 2,190,907 + -0.4 2,190,951 + +0.2 2,190,958 - -0.0 2,190,958 - +0.1 2,191,038 - -0.2 2,191,160 + ABZR88_RS08745 0.11 +0.1 2,191,187 + ABZR88_RS08745 0.12 +0.2 2,191,187 + ABZR88_RS08745 0.12 -0.2 2,191,187 + ABZR88_RS08745 0.12 +0.4 2,191,329 - ABZR88_RS08745 0.16 -0.1 2,191,370 - ABZR88_RS08745 0.18 +0.0 2,191,464 - ABZR88_RS08745 0.20 -0.2 2,191,737 + ABZR88_RS08745 0.29 +2.3
Or see this region's nucleotide sequence