Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07240

Experiment: Melibiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07235 and ABZR88_RS07240 are separated by 373 nucleotidesABZR88_RS07240 and ABZR88_RS07245 are separated by 7 nucleotides ABZR88_RS07235: ABZR88_RS07235 - sialate O-acetylesterase, at 1,786,696 to 1,788,093 _RS07235 ABZR88_RS07240: ABZR88_RS07240 - SusC/RagA family TonB-linked outer membrane protein, at 1,788,467 to 1,791,289 _RS07240 ABZR88_RS07245: ABZR88_RS07245 - RagB/SusD family nutrient uptake outer membrane protein, at 1,791,297 to 1,792,991 _RS07245 Position (kb) 1788 1789 1790 1791 1792Strain fitness (log2 ratio) -1 0 1 2at 1787.665 kb on - strand, within ABZR88_RS07235at 1787.814 kb on + strand, within ABZR88_RS07235at 1787.826 kb on - strand, within ABZR88_RS07235at 1787.835 kb on + strand, within ABZR88_RS07235at 1788.163 kb on - strandat 1788.552 kb on + strandat 1788.553 kb on - strandat 1788.788 kb on - strand, within ABZR88_RS07240at 1789.054 kb on + strand, within ABZR88_RS07240at 1789.070 kb on + strand, within ABZR88_RS07240at 1789.120 kb on + strand, within ABZR88_RS07240at 1789.328 kb on + strand, within ABZR88_RS07240at 1789.329 kb on - strand, within ABZR88_RS07240at 1789.347 kb on + strand, within ABZR88_RS07240at 1789.380 kb on + strand, within ABZR88_RS07240at 1789.413 kb on - strand, within ABZR88_RS07240at 1789.482 kb on + strand, within ABZR88_RS07240at 1789.559 kb on - strand, within ABZR88_RS07240at 1789.562 kb on - strand, within ABZR88_RS07240at 1789.941 kb on - strand, within ABZR88_RS07240at 1790.053 kb on + strand, within ABZR88_RS07240at 1790.123 kb on - strand, within ABZR88_RS07240at 1790.157 kb on - strand, within ABZR88_RS07240at 1790.177 kb on - strand, within ABZR88_RS07240at 1790.187 kb on - strand, within ABZR88_RS07240at 1790.209 kb on + strand, within ABZR88_RS07240at 1790.399 kb on + strand, within ABZR88_RS07240at 1790.471 kb on + strand, within ABZR88_RS07240at 1790.594 kb on + strand, within ABZR88_RS07240at 1790.594 kb on + strand, within ABZR88_RS07240at 1790.594 kb on + strand, within ABZR88_RS07240at 1790.642 kb on + strand, within ABZR88_RS07240at 1790.705 kb on + strand, within ABZR88_RS07240at 1790.831 kb on - strand, within ABZR88_RS07240at 1790.942 kb on + strand, within ABZR88_RS07240at 1791.113 kb on - strandat 1791.182 kb on - strandat 1791.286 kb on - strandat 1791.319 kb on + strandat 1791.337 kb on + strandat 1791.603 kb on - strand, within ABZR88_RS07245at 1791.615 kb on - strand, within ABZR88_RS07245at 1791.618 kb on + strand, within ABZR88_RS07245at 1791.618 kb on + strand, within ABZR88_RS07245at 1791.621 kb on - strand, within ABZR88_RS07245at 1791.665 kb on - strand, within ABZR88_RS07245at 1791.806 kb on + strand, within ABZR88_RS07245at 1791.806 kb on + strand, within ABZR88_RS07245at 1791.807 kb on - strand, within ABZR88_RS07245at 1791.970 kb on - strand, within ABZR88_RS07245at 1792.127 kb on + strand, within ABZR88_RS07245at 1792.143 kb on + strand, within ABZR88_RS07245

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C)
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1,787,665 - ABZR88_RS07235 0.69 +0.0
1,787,814 + ABZR88_RS07235 0.80 +0.0
1,787,826 - ABZR88_RS07235 0.81 +0.1
1,787,835 + ABZR88_RS07235 0.81 +0.5
1,788,163 - +0.3
1,788,552 + -0.1
1,788,553 - -0.1
1,788,788 - ABZR88_RS07240 0.11 -1.4
1,789,054 + ABZR88_RS07240 0.21 -0.1
1,789,070 + ABZR88_RS07240 0.21 -0.5
1,789,120 + ABZR88_RS07240 0.23 +0.4
1,789,328 + ABZR88_RS07240 0.30 -0.1
1,789,329 - ABZR88_RS07240 0.31 -0.6
1,789,347 + ABZR88_RS07240 0.31 +0.7
1,789,380 + ABZR88_RS07240 0.32 +0.7
1,789,413 - ABZR88_RS07240 0.34 -0.1
1,789,482 + ABZR88_RS07240 0.36 +0.1
1,789,559 - ABZR88_RS07240 0.39 -0.2
1,789,562 - ABZR88_RS07240 0.39 -0.6
1,789,941 - ABZR88_RS07240 0.52 +0.5
1,790,053 + ABZR88_RS07240 0.56 -0.0
1,790,123 - ABZR88_RS07240 0.59 +0.1
1,790,157 - ABZR88_RS07240 0.60 -1.1
1,790,177 - ABZR88_RS07240 0.61 +0.0
1,790,187 - ABZR88_RS07240 0.61 +0.1
1,790,209 + ABZR88_RS07240 0.62 +0.6
1,790,399 + ABZR88_RS07240 0.68 -0.0
1,790,471 + ABZR88_RS07240 0.71 -0.2
1,790,594 + ABZR88_RS07240 0.75 +0.4
1,790,594 + ABZR88_RS07240 0.75 +0.2
1,790,594 + ABZR88_RS07240 0.75 +1.3
1,790,642 + ABZR88_RS07240 0.77 +2.7
1,790,705 + ABZR88_RS07240 0.79 +0.0
1,790,831 - ABZR88_RS07240 0.84 -0.4
1,790,942 + ABZR88_RS07240 0.88 -0.0
1,791,113 - -0.3
1,791,182 - -0.0
1,791,286 - -0.5
1,791,319 + +0.3
1,791,337 + +0.5
1,791,603 - ABZR88_RS07245 0.18 -0.4
1,791,615 - ABZR88_RS07245 0.19 +0.0
1,791,618 + ABZR88_RS07245 0.19 +0.2
1,791,618 + ABZR88_RS07245 0.19 +0.1
1,791,621 - ABZR88_RS07245 0.19 +0.1
1,791,665 - ABZR88_RS07245 0.22 -0.2
1,791,806 + ABZR88_RS07245 0.30 +0.1
1,791,806 + ABZR88_RS07245 0.30 +0.0
1,791,807 - ABZR88_RS07245 0.30 -0.2
1,791,970 - ABZR88_RS07245 0.40 -0.5
1,792,127 + ABZR88_RS07245 0.49 +0.0
1,792,143 + ABZR88_RS07245 0.50 -0.1

Or see this region's nucleotide sequence