Experiment: Melibiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07235 and ABZR88_RS07240 are separated by 373 nucleotides ABZR88_RS07240 and ABZR88_RS07245 are separated by 7 nucleotides
ABZR88_RS07235: ABZR88_RS07235 - sialate O-acetylesterase, at 1,786,696 to 1,788,093
_RS07235
ABZR88_RS07240: ABZR88_RS07240 - SusC/RagA family TonB-linked outer membrane protein, at 1,788,467 to 1,791,289
_RS07240
ABZR88_RS07245: ABZR88_RS07245 - RagB/SusD family nutrient uptake outer membrane protein, at 1,791,297 to 1,792,991
_RS07245
Position (kb)
1788
1789
1790
1791
1792 Strain fitness (log2 ratio)
-1
0
1
2 at 1787.665 kb on - strand, within ABZR88_RS07235 at 1787.814 kb on + strand, within ABZR88_RS07235 at 1787.826 kb on - strand, within ABZR88_RS07235 at 1787.835 kb on + strand, within ABZR88_RS07235 at 1788.163 kb on - strand at 1788.552 kb on + strand at 1788.553 kb on - strand at 1788.788 kb on - strand, within ABZR88_RS07240 at 1789.054 kb on + strand, within ABZR88_RS07240 at 1789.070 kb on + strand, within ABZR88_RS07240 at 1789.120 kb on + strand, within ABZR88_RS07240 at 1789.328 kb on + strand, within ABZR88_RS07240 at 1789.329 kb on - strand, within ABZR88_RS07240 at 1789.347 kb on + strand, within ABZR88_RS07240 at 1789.380 kb on + strand, within ABZR88_RS07240 at 1789.413 kb on - strand, within ABZR88_RS07240 at 1789.482 kb on + strand, within ABZR88_RS07240 at 1789.559 kb on - strand, within ABZR88_RS07240 at 1789.562 kb on - strand, within ABZR88_RS07240 at 1789.941 kb on - strand, within ABZR88_RS07240 at 1790.053 kb on + strand, within ABZR88_RS07240 at 1790.123 kb on - strand, within ABZR88_RS07240 at 1790.157 kb on - strand, within ABZR88_RS07240 at 1790.177 kb on - strand, within ABZR88_RS07240 at 1790.187 kb on - strand, within ABZR88_RS07240 at 1790.209 kb on + strand, within ABZR88_RS07240 at 1790.399 kb on + strand, within ABZR88_RS07240 at 1790.471 kb on + strand, within ABZR88_RS07240 at 1790.594 kb on + strand, within ABZR88_RS07240 at 1790.594 kb on + strand, within ABZR88_RS07240 at 1790.594 kb on + strand, within ABZR88_RS07240 at 1790.642 kb on + strand, within ABZR88_RS07240 at 1790.705 kb on + strand, within ABZR88_RS07240 at 1790.831 kb on - strand, within ABZR88_RS07240 at 1790.942 kb on + strand, within ABZR88_RS07240 at 1791.113 kb on - strand at 1791.182 kb on - strand at 1791.286 kb on - strand at 1791.319 kb on + strand at 1791.337 kb on + strand at 1791.603 kb on - strand, within ABZR88_RS07245 at 1791.615 kb on - strand, within ABZR88_RS07245 at 1791.618 kb on + strand, within ABZR88_RS07245 at 1791.618 kb on + strand, within ABZR88_RS07245 at 1791.621 kb on - strand, within ABZR88_RS07245 at 1791.665 kb on - strand, within ABZR88_RS07245 at 1791.806 kb on + strand, within ABZR88_RS07245 at 1791.806 kb on + strand, within ABZR88_RS07245 at 1791.807 kb on - strand, within ABZR88_RS07245 at 1791.970 kb on - strand, within ABZR88_RS07245 at 1792.127 kb on + strand, within ABZR88_RS07245 at 1792.143 kb on + strand, within ABZR88_RS07245
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C) remove 1,787,665 - ABZR88_RS07235 0.69 +0.0 1,787,814 + ABZR88_RS07235 0.80 +0.0 1,787,826 - ABZR88_RS07235 0.81 +0.1 1,787,835 + ABZR88_RS07235 0.81 +0.5 1,788,163 - +0.3 1,788,552 + -0.1 1,788,553 - -0.1 1,788,788 - ABZR88_RS07240 0.11 -1.4 1,789,054 + ABZR88_RS07240 0.21 -0.1 1,789,070 + ABZR88_RS07240 0.21 -0.5 1,789,120 + ABZR88_RS07240 0.23 +0.4 1,789,328 + ABZR88_RS07240 0.30 -0.1 1,789,329 - ABZR88_RS07240 0.31 -0.6 1,789,347 + ABZR88_RS07240 0.31 +0.7 1,789,380 + ABZR88_RS07240 0.32 +0.7 1,789,413 - ABZR88_RS07240 0.34 -0.1 1,789,482 + ABZR88_RS07240 0.36 +0.1 1,789,559 - ABZR88_RS07240 0.39 -0.2 1,789,562 - ABZR88_RS07240 0.39 -0.6 1,789,941 - ABZR88_RS07240 0.52 +0.5 1,790,053 + ABZR88_RS07240 0.56 -0.0 1,790,123 - ABZR88_RS07240 0.59 +0.1 1,790,157 - ABZR88_RS07240 0.60 -1.1 1,790,177 - ABZR88_RS07240 0.61 +0.0 1,790,187 - ABZR88_RS07240 0.61 +0.1 1,790,209 + ABZR88_RS07240 0.62 +0.6 1,790,399 + ABZR88_RS07240 0.68 -0.0 1,790,471 + ABZR88_RS07240 0.71 -0.2 1,790,594 + ABZR88_RS07240 0.75 +0.4 1,790,594 + ABZR88_RS07240 0.75 +0.2 1,790,594 + ABZR88_RS07240 0.75 +1.3 1,790,642 + ABZR88_RS07240 0.77 +2.7 1,790,705 + ABZR88_RS07240 0.79 +0.0 1,790,831 - ABZR88_RS07240 0.84 -0.4 1,790,942 + ABZR88_RS07240 0.88 -0.0 1,791,113 - -0.3 1,791,182 - -0.0 1,791,286 - -0.5 1,791,319 + +0.3 1,791,337 + +0.5 1,791,603 - ABZR88_RS07245 0.18 -0.4 1,791,615 - ABZR88_RS07245 0.19 +0.0 1,791,618 + ABZR88_RS07245 0.19 +0.2 1,791,618 + ABZR88_RS07245 0.19 +0.1 1,791,621 - ABZR88_RS07245 0.19 +0.1 1,791,665 - ABZR88_RS07245 0.22 -0.2 1,791,806 + ABZR88_RS07245 0.30 +0.1 1,791,806 + ABZR88_RS07245 0.30 +0.0 1,791,807 - ABZR88_RS07245 0.30 -0.2 1,791,970 - ABZR88_RS07245 0.40 -0.5 1,792,127 + ABZR88_RS07245 0.49 +0.0 1,792,143 + ABZR88_RS07245 0.50 -0.1
Or see this region's nucleotide sequence