Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07230

Experiment: Melibiose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS07225 and ABZR88_RS07230 are separated by 1 nucleotidesABZR88_RS07230 and ABZR88_RS07235 are separated by 5 nucleotides ABZR88_RS07225: ABZR88_RS07225 - sodium:solute symporter family protein, at 1,784,062 to 1,785,759 _RS07225 ABZR88_RS07230: ABZR88_RS07230 - alpha/beta hydrolase, at 1,785,761 to 1,786,690 _RS07230 ABZR88_RS07235: ABZR88_RS07235 - sialate O-acetylesterase, at 1,786,696 to 1,788,093 _RS07235 Position (kb) 1785 1786 1787Strain fitness (log2 ratio) -1 0 1at 1784.791 kb on + strand, within ABZR88_RS07225at 1784.813 kb on + strand, within ABZR88_RS07225at 1784.818 kb on - strand, within ABZR88_RS07225at 1784.953 kb on + strand, within ABZR88_RS07225at 1784.953 kb on + strand, within ABZR88_RS07225at 1785.040 kb on - strand, within ABZR88_RS07225at 1785.147 kb on + strand, within ABZR88_RS07225at 1785.180 kb on - strand, within ABZR88_RS07225at 1785.239 kb on + strand, within ABZR88_RS07225at 1785.393 kb on + strand, within ABZR88_RS07225at 1785.457 kb on + strand, within ABZR88_RS07225at 1785.672 kb on - strandat 1785.760 kb on + strandat 1785.775 kb on + strandat 1785.778 kb on - strandat 1785.834 kb on - strandat 1785.933 kb on + strand, within ABZR88_RS07230at 1785.934 kb on - strand, within ABZR88_RS07230at 1786.331 kb on - strand, within ABZR88_RS07230at 1786.480 kb on + strand, within ABZR88_RS07230at 1786.721 kb on + strandat 1786.722 kb on - strandat 1786.958 kb on + strand, within ABZR88_RS07235at 1786.983 kb on + strand, within ABZR88_RS07235at 1787.037 kb on + strand, within ABZR88_RS07235at 1787.037 kb on + strand, within ABZR88_RS07235at 1787.283 kb on + strand, within ABZR88_RS07235at 1787.302 kb on - strand, within ABZR88_RS07235at 1787.404 kb on - strand, within ABZR88_RS07235at 1787.407 kb on + strand, within ABZR88_RS07235at 1787.665 kb on - strand, within ABZR88_RS07235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C)
remove
1,784,791 + ABZR88_RS07225 0.43 -0.2
1,784,813 + ABZR88_RS07225 0.44 -1.3
1,784,818 - ABZR88_RS07225 0.45 -0.1
1,784,953 + ABZR88_RS07225 0.52 -0.2
1,784,953 + ABZR88_RS07225 0.52 -1.0
1,785,040 - ABZR88_RS07225 0.58 -0.4
1,785,147 + ABZR88_RS07225 0.64 +0.3
1,785,180 - ABZR88_RS07225 0.66 -0.1
1,785,239 + ABZR88_RS07225 0.69 +0.9
1,785,393 + ABZR88_RS07225 0.78 -0.5
1,785,457 + ABZR88_RS07225 0.82 -0.5
1,785,672 - +0.7
1,785,760 + +0.0
1,785,775 + +0.5
1,785,778 - +0.2
1,785,834 - +0.0
1,785,933 + ABZR88_RS07230 0.18 +0.0
1,785,934 - ABZR88_RS07230 0.19 +0.4
1,786,331 - ABZR88_RS07230 0.61 -0.2
1,786,480 + ABZR88_RS07230 0.77 -0.7
1,786,721 + -0.1
1,786,722 - -0.5
1,786,958 + ABZR88_RS07235 0.19 +0.2
1,786,983 + ABZR88_RS07235 0.21 +0.1
1,787,037 + ABZR88_RS07235 0.24 +0.1
1,787,037 + ABZR88_RS07235 0.24 +0.3
1,787,283 + ABZR88_RS07235 0.42 +0.2
1,787,302 - ABZR88_RS07235 0.43 +0.8
1,787,404 - ABZR88_RS07235 0.51 -0.4
1,787,407 + ABZR88_RS07235 0.51 +0.3
1,787,665 - ABZR88_RS07235 0.69 +0.0

Or see this region's nucleotide sequence