Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07215

Experiment: Melibiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07210 and ABZR88_RS07215 are separated by 6 nucleotidesABZR88_RS07215 and ABZR88_RS07220 are separated by 168 nucleotides ABZR88_RS07210: ABZR88_RS07210 - alpha-galactosidase, at 1,778,401 to 1,780,563 _RS07210 ABZR88_RS07215: ABZR88_RS07215 - LacI family DNA-binding transcriptional regulator, at 1,780,570 to 1,781,595 _RS07215 ABZR88_RS07220: ABZR88_RS07220 - FAD-dependent oxidoreductase, at 1,781,764 to 1,784,058 _RS07220 Position (kb) 1780 1781 1782Strain fitness (log2 ratio) -1 0 1at 1779.860 kb on - strand, within ABZR88_RS07210at 1779.868 kb on - strand, within ABZR88_RS07210at 1779.875 kb on - strand, within ABZR88_RS07210at 1779.882 kb on - strand, within ABZR88_RS07210at 1779.922 kb on - strand, within ABZR88_RS07210at 1779.922 kb on - strand, within ABZR88_RS07210at 1779.922 kb on - strand, within ABZR88_RS07210at 1780.059 kb on + strand, within ABZR88_RS07210at 1780.141 kb on + strand, within ABZR88_RS07210at 1780.291 kb on + strand, within ABZR88_RS07210at 1780.291 kb on + strand, within ABZR88_RS07210at 1780.291 kb on + strand, within ABZR88_RS07210at 1780.291 kb on + strand, within ABZR88_RS07210at 1780.292 kb on - strand, within ABZR88_RS07210at 1780.326 kb on + strand, within ABZR88_RS07210at 1780.403 kb on - strandat 1780.468 kb on + strandat 1780.469 kb on - strandat 1780.480 kb on + strandat 1780.752 kb on - strand, within ABZR88_RS07215at 1780.752 kb on - strand, within ABZR88_RS07215at 1780.779 kb on + strand, within ABZR88_RS07215at 1780.986 kb on - strand, within ABZR88_RS07215at 1781.216 kb on - strand, within ABZR88_RS07215at 1781.316 kb on - strand, within ABZR88_RS07215at 1781.353 kb on + strand, within ABZR88_RS07215at 1781.392 kb on - strand, within ABZR88_RS07215at 1781.500 kb on + strandat 1781.887 kb on - strandat 1782.026 kb on + strand, within ABZR88_RS07220at 1782.078 kb on + strand, within ABZR88_RS07220at 1782.390 kb on + strand, within ABZR88_RS07220at 1782.438 kb on + strand, within ABZR88_RS07220at 1782.449 kb on + strand, within ABZR88_RS07220at 1782.468 kb on + strand, within ABZR88_RS07220at 1782.468 kb on + strand, within ABZR88_RS07220at 1782.475 kb on - strand, within ABZR88_RS07220at 1782.574 kb on + strand, within ABZR88_RS07220

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C)
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1,779,860 - ABZR88_RS07210 0.67 -0.9
1,779,868 - ABZR88_RS07210 0.68 -0.3
1,779,875 - ABZR88_RS07210 0.68 -1.1
1,779,882 - ABZR88_RS07210 0.68 -0.1
1,779,922 - ABZR88_RS07210 0.70 +0.2
1,779,922 - ABZR88_RS07210 0.70 -0.1
1,779,922 - ABZR88_RS07210 0.70 -1.2
1,780,059 + ABZR88_RS07210 0.77 -0.6
1,780,141 + ABZR88_RS07210 0.80 -0.0
1,780,291 + ABZR88_RS07210 0.87 +0.0
1,780,291 + ABZR88_RS07210 0.87 -1.1
1,780,291 + ABZR88_RS07210 0.87 -0.6
1,780,291 + ABZR88_RS07210 0.87 -0.8
1,780,292 - ABZR88_RS07210 0.87 -0.4
1,780,326 + ABZR88_RS07210 0.89 -0.6
1,780,403 - -1.0
1,780,468 + -0.7
1,780,469 - +0.5
1,780,480 + +0.3
1,780,752 - ABZR88_RS07215 0.18 -0.7
1,780,752 - ABZR88_RS07215 0.18 -0.3
1,780,779 + ABZR88_RS07215 0.20 +0.0
1,780,986 - ABZR88_RS07215 0.41 -1.0
1,781,216 - ABZR88_RS07215 0.63 +1.5
1,781,316 - ABZR88_RS07215 0.73 +0.1
1,781,353 + ABZR88_RS07215 0.76 -0.1
1,781,392 - ABZR88_RS07215 0.80 +0.1
1,781,500 + -0.5
1,781,887 - -0.3
1,782,026 + ABZR88_RS07220 0.11 -0.6
1,782,078 + ABZR88_RS07220 0.14 -0.3
1,782,390 + ABZR88_RS07220 0.27 -0.3
1,782,438 + ABZR88_RS07220 0.29 -0.2
1,782,449 + ABZR88_RS07220 0.30 +1.0
1,782,468 + ABZR88_RS07220 0.31 +0.1
1,782,468 + ABZR88_RS07220 0.31 -0.2
1,782,475 - ABZR88_RS07220 0.31 -0.4
1,782,574 + ABZR88_RS07220 0.35 -0.1

Or see this region's nucleotide sequence