Experiment: Melibiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07210 and ABZR88_RS07215 are separated by 6 nucleotides ABZR88_RS07215 and ABZR88_RS07220 are separated by 168 nucleotides
ABZR88_RS07210: ABZR88_RS07210 - alpha-galactosidase, at 1,778,401 to 1,780,563
_RS07210
ABZR88_RS07215: ABZR88_RS07215 - LacI family DNA-binding transcriptional regulator, at 1,780,570 to 1,781,595
_RS07215
ABZR88_RS07220: ABZR88_RS07220 - FAD-dependent oxidoreductase, at 1,781,764 to 1,784,058
_RS07220
Position (kb)
1780
1781
1782 Strain fitness (log2 ratio)
-1
0
1 at 1779.860 kb on - strand, within ABZR88_RS07210 at 1779.868 kb on - strand, within ABZR88_RS07210 at 1779.875 kb on - strand, within ABZR88_RS07210 at 1779.882 kb on - strand, within ABZR88_RS07210 at 1779.922 kb on - strand, within ABZR88_RS07210 at 1779.922 kb on - strand, within ABZR88_RS07210 at 1779.922 kb on - strand, within ABZR88_RS07210 at 1780.059 kb on + strand, within ABZR88_RS07210 at 1780.141 kb on + strand, within ABZR88_RS07210 at 1780.291 kb on + strand, within ABZR88_RS07210 at 1780.291 kb on + strand, within ABZR88_RS07210 at 1780.291 kb on + strand, within ABZR88_RS07210 at 1780.291 kb on + strand, within ABZR88_RS07210 at 1780.292 kb on - strand, within ABZR88_RS07210 at 1780.326 kb on + strand, within ABZR88_RS07210 at 1780.403 kb on - strand at 1780.468 kb on + strand at 1780.469 kb on - strand at 1780.480 kb on + strand at 1780.752 kb on - strand, within ABZR88_RS07215 at 1780.752 kb on - strand, within ABZR88_RS07215 at 1780.779 kb on + strand, within ABZR88_RS07215 at 1780.986 kb on - strand, within ABZR88_RS07215 at 1781.216 kb on - strand, within ABZR88_RS07215 at 1781.316 kb on - strand, within ABZR88_RS07215 at 1781.353 kb on + strand, within ABZR88_RS07215 at 1781.392 kb on - strand, within ABZR88_RS07215 at 1781.500 kb on + strand at 1781.887 kb on - strand at 1782.026 kb on + strand, within ABZR88_RS07220 at 1782.078 kb on + strand, within ABZR88_RS07220 at 1782.390 kb on + strand, within ABZR88_RS07220 at 1782.438 kb on + strand, within ABZR88_RS07220 at 1782.449 kb on + strand, within ABZR88_RS07220 at 1782.468 kb on + strand, within ABZR88_RS07220 at 1782.468 kb on + strand, within ABZR88_RS07220 at 1782.475 kb on - strand, within ABZR88_RS07220 at 1782.574 kb on + strand, within ABZR88_RS07220
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C) remove 1,779,860 - ABZR88_RS07210 0.67 -0.9 1,779,868 - ABZR88_RS07210 0.68 -0.3 1,779,875 - ABZR88_RS07210 0.68 -1.1 1,779,882 - ABZR88_RS07210 0.68 -0.1 1,779,922 - ABZR88_RS07210 0.70 +0.2 1,779,922 - ABZR88_RS07210 0.70 -0.1 1,779,922 - ABZR88_RS07210 0.70 -1.2 1,780,059 + ABZR88_RS07210 0.77 -0.6 1,780,141 + ABZR88_RS07210 0.80 -0.0 1,780,291 + ABZR88_RS07210 0.87 +0.0 1,780,291 + ABZR88_RS07210 0.87 -1.1 1,780,291 + ABZR88_RS07210 0.87 -0.6 1,780,291 + ABZR88_RS07210 0.87 -0.8 1,780,292 - ABZR88_RS07210 0.87 -0.4 1,780,326 + ABZR88_RS07210 0.89 -0.6 1,780,403 - -1.0 1,780,468 + -0.7 1,780,469 - +0.5 1,780,480 + +0.3 1,780,752 - ABZR88_RS07215 0.18 -0.7 1,780,752 - ABZR88_RS07215 0.18 -0.3 1,780,779 + ABZR88_RS07215 0.20 +0.0 1,780,986 - ABZR88_RS07215 0.41 -1.0 1,781,216 - ABZR88_RS07215 0.63 +1.5 1,781,316 - ABZR88_RS07215 0.73 +0.1 1,781,353 + ABZR88_RS07215 0.76 -0.1 1,781,392 - ABZR88_RS07215 0.80 +0.1 1,781,500 + -0.5 1,781,887 - -0.3 1,782,026 + ABZR88_RS07220 0.11 -0.6 1,782,078 + ABZR88_RS07220 0.14 -0.3 1,782,390 + ABZR88_RS07220 0.27 -0.3 1,782,438 + ABZR88_RS07220 0.29 -0.2 1,782,449 + ABZR88_RS07220 0.30 +1.0 1,782,468 + ABZR88_RS07220 0.31 +0.1 1,782,468 + ABZR88_RS07220 0.31 -0.2 1,782,475 - ABZR88_RS07220 0.31 -0.4 1,782,574 + ABZR88_RS07220 0.35 -0.1
Or see this region's nucleotide sequence