Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01520 and ABZR88_RS01525 are separated by 22 nucleotides ABZR88_RS01525 and ABZR88_RS01530 are separated by 84 nucleotides ABZR88_RS01530 and ABZR88_RS01535 are separated by 170 nucleotides
ABZR88_RS01520: ABZR88_RS01520 - efflux RND transporter periplasmic adaptor subunit, at 347,131 to 348,474
_RS01520
ABZR88_RS01525: ABZR88_RS01525 - TolC family protein, at 348,497 to 349,867
_RS01525
ABZR88_RS01530: ABZR88_RS01530 - polysaccharide deacetylase family protein, at 349,952 to 350,572
_RS01530
ABZR88_RS01535: ABZR88_RS01535 - 2-oxoglutarate dehydrogenase E1 component, at 350,743 to 353,547
_RS01535
Position (kb) 348
349
350 Strain fitness (log2 ratio) -1
0
1 at 347.776 kb on + strand, within ABZR88_RS01520 at 347.874 kb on - strand, within ABZR88_RS01520 at 347.895 kb on + strand, within ABZR88_RS01520 at 347.896 kb on - strand, within ABZR88_RS01520 at 348.152 kb on + strand, within ABZR88_RS01520 at 348.152 kb on + strand, within ABZR88_RS01520 at 348.153 kb on - strand, within ABZR88_RS01520 at 348.336 kb on + strand, within ABZR88_RS01520 at 348.453 kb on + strand at 348.593 kb on - strand at 348.613 kb on + strand at 348.861 kb on - strand, within ABZR88_RS01525 at 348.969 kb on + strand, within ABZR88_RS01525 at 348.970 kb on - strand, within ABZR88_RS01525 at 349.151 kb on + strand, within ABZR88_RS01525 at 349.174 kb on + strand, within ABZR88_RS01525 at 349.321 kb on + strand, within ABZR88_RS01525 at 349.604 kb on - strand, within ABZR88_RS01525 at 349.867 kb on + strand at 349.989 kb on + strand at 350.102 kb on + strand, within ABZR88_RS01530 at 350.137 kb on + strand, within ABZR88_RS01530 at 350.138 kb on - strand, within ABZR88_RS01530 at 350.138 kb on - strand, within ABZR88_RS01530 at 350.204 kb on - strand, within ABZR88_RS01530 at 350.284 kb on + strand, within ABZR88_RS01530 at 350.285 kb on - strand, within ABZR88_RS01530 at 350.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 347,776 + ABZR88_RS01520 0.48 +0.0 347,874 - ABZR88_RS01520 0.55 -0.6 347,895 + ABZR88_RS01520 0.57 +1.0 347,896 - ABZR88_RS01520 0.57 +1.4 348,152 + ABZR88_RS01520 0.76 +0.6 348,152 + ABZR88_RS01520 0.76 +1.0 348,153 - ABZR88_RS01520 0.76 +0.2 348,336 + ABZR88_RS01520 0.90 -0.3 348,453 + -0.5 348,593 - -0.3 348,613 + -0.2 348,861 - ABZR88_RS01525 0.27 +0.0 348,969 + ABZR88_RS01525 0.34 -0.5 348,970 - ABZR88_RS01525 0.35 +0.8 349,151 + ABZR88_RS01525 0.48 +0.1 349,174 + ABZR88_RS01525 0.49 +0.8 349,321 + ABZR88_RS01525 0.60 -1.5 349,604 - ABZR88_RS01525 0.81 +0.7 349,867 + +1.2 349,989 + -0.3 350,102 + ABZR88_RS01530 0.24 +0.6 350,137 + ABZR88_RS01530 0.30 -0.8 350,138 - ABZR88_RS01530 0.30 -0.4 350,138 - ABZR88_RS01530 0.30 -0.5 350,204 - ABZR88_RS01530 0.41 +1.6 350,284 + ABZR88_RS01530 0.53 -1.3 350,285 - ABZR88_RS01530 0.54 -0.5 350,586 - -0.0
Or see this region's nucleotide sequence