Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17715 and ABZR88_RS17720 are separated by 99 nucleotides ABZR88_RS17720 and ABZR88_RS17725 are separated by 145 nucleotides ABZR88_RS17725 and ABZR88_RS17730 are separated by 144 nucleotides
ABZR88_RS17715: ABZR88_RS17715 - acyltransferase, at 4,330,970 to 4,332,226
_RS17715
ABZR88_RS17720: ABZR88_RS17720 - hypothetical protein, at 4,332,326 to 4,332,775
_RS17720
ABZR88_RS17725: ABZR88_RS17725 - DNA-directed RNA polymerase subunit beta', at 4,332,921 to 4,337,213
_RS17725
ABZR88_RS17730: ABZR88_RS17730 - DNA-directed RNA polymerase subunit beta, at 4,337,358 to 4,341,161
_RS17730
Position (kb) 4332
4333
4334
4335
4336
4337
4338 Strain fitness (log2 ratio) -1
0
1 at 4332.048 kb on - strand, within ABZR88_RS17715 at 4332.144 kb on - strand at 4332.284 kb on + strand at 4332.354 kb on + strand at 4332.600 kb on - strand, within ABZR88_RS17720 at 4332.620 kb on - strand, within ABZR88_RS17720 at 4332.713 kb on + strand, within ABZR88_RS17720 at 4332.716 kb on - strand, within ABZR88_RS17720 at 4332.727 kb on + strand, within ABZR88_RS17720 at 4332.802 kb on + strand at 4332.803 kb on - strand at 4332.823 kb on - strand at 4332.825 kb on + strand at 4332.837 kb on - strand at 4332.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 4,332,048 - ABZR88_RS17715 0.86 -0.5 4,332,144 - -0.3 4,332,284 + -0.7 4,332,354 + +0.4 4,332,600 - ABZR88_RS17720 0.61 +1.0 4,332,620 - ABZR88_RS17720 0.65 +0.5 4,332,713 + ABZR88_RS17720 0.86 +0.2 4,332,716 - ABZR88_RS17720 0.87 +0.0 4,332,727 + ABZR88_RS17720 0.89 -0.0 4,332,802 + +0.1 4,332,803 - +0.0 4,332,823 - +0.4 4,332,825 + +0.0 4,332,837 - +0.3 4,332,852 - +0.1
Or see this region's nucleotide sequence