Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06939

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06937 and MPMX19_06938 are separated by 132 nucleotidesMPMX19_06938 and MPMX19_06939 overlap by 8 nucleotidesMPMX19_06939 and MPMX19_06940 are separated by 4 nucleotides MPMX19_06937: MPMX19_06937 - hypothetical protein, at 209,535 to 210,818 _06937 MPMX19_06938: MPMX19_06938 - Short-chain-enoyl-CoA hydratase, at 210,951 to 211,766 _06938 MPMX19_06939: MPMX19_06939 - S-(hydroxymethyl)glutathione dehydrogenase, at 211,759 to 212,889 _06939 MPMX19_06940: MPMX19_06940 - Ectoine dioxygenase, at 212,894 to 213,730 _06940 Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 210.939 kb on + strandat 210.939 kb on + strandat 210.940 kb on - strandat 211.886 kb on + strand, within MPMX19_06939at 211.886 kb on + strand, within MPMX19_06939at 211.886 kb on + strand, within MPMX19_06939at 211.887 kb on - strand, within MPMX19_06939at 211.887 kb on - strand, within MPMX19_06939at 211.899 kb on - strand, within MPMX19_06939at 211.899 kb on - strand, within MPMX19_06939at 212.450 kb on + strand, within MPMX19_06939at 212.450 kb on + strand, within MPMX19_06939at 212.451 kb on - strand, within MPMX19_06939at 212.594 kb on + strand, within MPMX19_06939at 212.594 kb on + strand, within MPMX19_06939at 212.595 kb on - strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.895 kb on + strandat 212.895 kb on + strandat 212.895 kb on + strandat 212.895 kb on + strandat 212.896 kb on - strandat 213.048 kb on + strand, within MPMX19_06940at 213.048 kb on + strand, within MPMX19_06940at 213.049 kb on - strand, within MPMX19_06940at 213.049 kb on - strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.441 kb on + strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.684 kb on + strandat 213.684 kb on + strandat 213.685 kb on - strandat 213.700 kb on - strandat 213.793 kb on + strandat 213.793 kb on + strandat 213.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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210,939 + +0.7
210,939 + +1.3
210,940 - -1.8
211,886 + MPMX19_06939 0.11 -1.4
211,886 + MPMX19_06939 0.11 +0.1
211,886 + MPMX19_06939 0.11 -0.5
211,887 - MPMX19_06939 0.11 +0.1
211,887 - MPMX19_06939 0.11 -0.4
211,899 - MPMX19_06939 0.12 +0.2
211,899 - MPMX19_06939 0.12 +0.3
212,450 + MPMX19_06939 0.61 -1.8
212,450 + MPMX19_06939 0.61 -1.3
212,451 - MPMX19_06939 0.61 +0.9
212,594 + MPMX19_06939 0.74 +0.4
212,594 + MPMX19_06939 0.74 -0.5
212,595 - MPMX19_06939 0.74 -0.4
212,597 + MPMX19_06939 0.74 -1.1
212,597 + MPMX19_06939 0.74 -1.1
212,597 + MPMX19_06939 0.74 -0.2
212,597 + MPMX19_06939 0.74 -1.1
212,597 + MPMX19_06939 0.74 -0.8
212,597 + MPMX19_06939 0.74 -2.3
212,597 + MPMX19_06939 0.74 -1.8
212,597 + MPMX19_06939 0.74 -1.0
212,597 + MPMX19_06939 0.74 -0.8
212,597 + MPMX19_06939 0.74 -0.8
212,598 - MPMX19_06939 0.74 -0.4
212,598 - MPMX19_06939 0.74 -0.1
212,598 - MPMX19_06939 0.74 +0.5
212,598 - MPMX19_06939 0.74 -0.2
212,598 - MPMX19_06939 0.74 +0.1
212,598 - MPMX19_06939 0.74 -1.0
212,598 - MPMX19_06939 0.74 -1.0
212,598 - MPMX19_06939 0.74 +0.7
212,598 - MPMX19_06939 0.74 -1.1
212,618 + MPMX19_06939 0.76 -1.8
212,618 + MPMX19_06939 0.76 +0.6
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 -0.3
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 +0.5
212,618 + MPMX19_06939 0.76 -0.8
212,618 + MPMX19_06939 0.76 +0.4
212,618 + MPMX19_06939 0.76 -0.3
212,618 + MPMX19_06939 0.76 -0.6
212,618 + MPMX19_06939 0.76 -1.2
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 -0.8
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 -1.7
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 +0.0
212,618 + MPMX19_06939 0.76 -1.2
212,618 + MPMX19_06939 0.76 +0.1
212,618 + MPMX19_06939 0.76 -0.9
212,618 + MPMX19_06939 0.76 +1.5
212,618 + MPMX19_06939 0.76 +0.5
212,618 + MPMX19_06939 0.76 -0.3
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 -0.9
212,618 + MPMX19_06939 0.76 -0.8
212,619 - MPMX19_06939 0.76 -2.2
212,619 - MPMX19_06939 0.76 +0.7
212,619 - MPMX19_06939 0.76 -1.9
212,619 - MPMX19_06939 0.76 -1.0
212,619 - MPMX19_06939 0.76 -1.8
212,619 - MPMX19_06939 0.76 -0.7
212,619 - MPMX19_06939 0.76 +0.5
212,619 - MPMX19_06939 0.76 -0.9
212,619 - MPMX19_06939 0.76 +0.2
212,619 - MPMX19_06939 0.76 -0.1
212,619 - MPMX19_06939 0.76 +1.1
212,619 - MPMX19_06939 0.76 +0.1
212,619 - MPMX19_06939 0.76 -1.1
212,619 - MPMX19_06939 0.76 +0.2
212,619 - MPMX19_06939 0.76 -0.4
212,619 - MPMX19_06939 0.76 -0.4
212,619 - MPMX19_06939 0.76 -1.8
212,619 - MPMX19_06939 0.76 -1.4
212,619 - MPMX19_06939 0.76 +0.4
212,619 - MPMX19_06939 0.76 -0.8
212,619 - MPMX19_06939 0.76 -0.8
212,619 - MPMX19_06939 0.76 -0.5
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 +0.0
212,619 - MPMX19_06939 0.76 -1.7
212,619 - MPMX19_06939 0.76 -1.6
212,619 - MPMX19_06939 0.76 -1.3
212,619 - MPMX19_06939 0.76 -0.8
212,619 - MPMX19_06939 0.76 -2.3
212,619 - MPMX19_06939 0.76 -0.1
212,895 + +0.1
212,895 + -1.3
212,895 + -0.8
212,895 + +0.5
212,896 - -0.6
213,048 + MPMX19_06940 0.18 -0.5
213,048 + MPMX19_06940 0.18 -0.4
213,049 - MPMX19_06940 0.19 -1.8
213,049 - MPMX19_06940 0.19 -0.8
213,057 + MPMX19_06940 0.19 +2.1
213,057 + MPMX19_06940 0.19 -0.5
213,057 + MPMX19_06940 0.19 -1.7
213,057 + MPMX19_06940 0.19 -0.4
213,057 + MPMX19_06940 0.19 -1.9
213,057 + MPMX19_06940 0.19 +0.8
213,057 + MPMX19_06940 0.19 -1.2
213,057 + MPMX19_06940 0.19 +0.2
213,057 + MPMX19_06940 0.19 -0.7
213,057 + MPMX19_06940 0.19 -1.2
213,057 + MPMX19_06940 0.19 -0.3
213,057 + MPMX19_06940 0.19 +1.1
213,057 + MPMX19_06940 0.19 -0.2
213,058 - MPMX19_06940 0.20 +0.8
213,058 - MPMX19_06940 0.20 +0.2
213,058 - MPMX19_06940 0.20 -0.8
213,058 - MPMX19_06940 0.20 -0.8
213,058 - MPMX19_06940 0.20 -2.2
213,058 - MPMX19_06940 0.20 -1.3
213,058 - MPMX19_06940 0.20 -1.3
213,058 - MPMX19_06940 0.20 -1.2
213,058 - MPMX19_06940 0.20 -0.3
213,058 - MPMX19_06940 0.20 -0.8
213,058 - MPMX19_06940 0.20 -1.5
213,058 - MPMX19_06940 0.20 -0.8
213,219 + MPMX19_06940 0.39 +0.2
213,219 + MPMX19_06940 0.39 -0.6
213,219 + MPMX19_06940 0.39 -0.3
213,219 + MPMX19_06940 0.39 -1.9
213,219 + MPMX19_06940 0.39 -0.5
213,219 + MPMX19_06940 0.39 +0.9
213,219 + MPMX19_06940 0.39 -0.8
213,219 + MPMX19_06940 0.39 -0.1
213,219 + MPMX19_06940 0.39 -0.9
213,219 + MPMX19_06940 0.39 +0.1
213,219 + MPMX19_06940 0.39 -1.7
213,220 - MPMX19_06940 0.39 -1.4
213,220 - MPMX19_06940 0.39 -0.1
213,220 - MPMX19_06940 0.39 +0.1
213,220 - MPMX19_06940 0.39 -1.4
213,220 - MPMX19_06940 0.39 -0.7
213,220 - MPMX19_06940 0.39 -0.9
213,220 - MPMX19_06940 0.39 -0.5
213,220 - MPMX19_06940 0.39 -0.1
213,220 - MPMX19_06940 0.39 +1.9
213,220 - MPMX19_06940 0.39 -0.9
213,220 - MPMX19_06940 0.39 -0.7
213,220 - MPMX19_06940 0.39 +0.1
213,220 - MPMX19_06940 0.39 -0.8
213,220 - MPMX19_06940 0.39 +0.8
213,285 + MPMX19_06940 0.47 -1.9
213,285 + MPMX19_06940 0.47 +0.4
213,285 + MPMX19_06940 0.47 -0.1
213,285 + MPMX19_06940 0.47 +0.6
213,285 + MPMX19_06940 0.47 +0.7
213,285 + MPMX19_06940 0.47 +0.1
213,285 + MPMX19_06940 0.47 -0.5
213,285 + MPMX19_06940 0.47 +0.1
213,286 - MPMX19_06940 0.47 -1.7
213,286 - MPMX19_06940 0.47 -1.3
213,286 - MPMX19_06940 0.47 +0.9
213,378 + MPMX19_06940 0.58 -0.8
213,378 + MPMX19_06940 0.58 -0.5
213,378 + MPMX19_06940 0.58 -0.2
213,378 + MPMX19_06940 0.58 -1.2
213,379 - MPMX19_06940 0.58 +0.3
213,379 - MPMX19_06940 0.58 +0.1
213,379 - MPMX19_06940 0.58 +1.0
213,441 + MPMX19_06940 0.65 +0.0
213,442 - MPMX19_06940 0.65 -0.7
213,442 - MPMX19_06940 0.65 -0.1
213,442 - MPMX19_06940 0.65 +0.2
213,442 - MPMX19_06940 0.65 +0.1
213,442 - MPMX19_06940 0.65 -0.6
213,447 + MPMX19_06940 0.66 -0.4
213,447 + MPMX19_06940 0.66 -0.6
213,447 + MPMX19_06940 0.66 -0.8
213,448 - MPMX19_06940 0.66 -0.4
213,448 - MPMX19_06940 0.66 -1.3
213,448 - MPMX19_06940 0.66 -0.8
213,448 - MPMX19_06940 0.66 -0.7
213,448 - MPMX19_06940 0.66 -0.3
213,448 - MPMX19_06940 0.66 -0.3
213,684 + -0.8
213,684 + -1.0
213,685 - +0.4
213,700 - -0.5
213,793 + -1.5
213,793 + +0.9
213,801 + +0.1

Or see this region's nucleotide sequence