Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06776

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06775 and MPMX19_06776 are separated by 138 nucleotidesMPMX19_06776 and MPMX19_06777 are separated by 210 nucleotidesMPMX19_06777 and MPMX19_06778 are separated by 16 nucleotides MPMX19_06775: MPMX19_06775 - Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase, at 40,668 to 41,561 _06775 MPMX19_06776: MPMX19_06776 - hypothetical protein, at 41,700 to 42,107 _06776 MPMX19_06777: MPMX19_06777 - hypothetical protein, at 42,318 to 43,022 _06777 MPMX19_06778: MPMX19_06778 - HTH-type transcriptional regulator YhaJ, at 43,039 to 43,968 _06778 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.881 kb on + strand, within MPMX19_06775at 40.881 kb on + strand, within MPMX19_06775at 40.882 kb on - strand, within MPMX19_06775at 41.022 kb on + strand, within MPMX19_06775at 41.022 kb on + strand, within MPMX19_06775at 41.023 kb on - strand, within MPMX19_06775at 41.140 kb on - strand, within MPMX19_06775at 41.140 kb on - strand, within MPMX19_06775at 41.140 kb on - strand, within MPMX19_06775at 41.217 kb on + strand, within MPMX19_06775at 41.218 kb on - strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.497 kb on - strandat 41.497 kb on - strandat 41.497 kb on - strandat 41.627 kb on + strandat 41.638 kb on + strandat 41.639 kb on - strandat 41.639 kb on - strandat 41.639 kb on - strandat 41.937 kb on - strand, within MPMX19_06776at 41.965 kb on + strand, within MPMX19_06776at 41.965 kb on + strand, within MPMX19_06776at 41.965 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.147 kb on + strandat 42.482 kb on + strand, within MPMX19_06777at 42.483 kb on - strand, within MPMX19_06777at 42.483 kb on - strand, within MPMX19_06777at 42.696 kb on + strand, within MPMX19_06777

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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40,881 + MPMX19_06775 0.24 +0.1
40,881 + MPMX19_06775 0.24 -0.3
40,882 - MPMX19_06775 0.24 -1.0
41,022 + MPMX19_06775 0.40 +0.1
41,022 + MPMX19_06775 0.40 -0.3
41,023 - MPMX19_06775 0.40 -0.5
41,140 - MPMX19_06775 0.53 -1.7
41,140 - MPMX19_06775 0.53 -2.1
41,140 - MPMX19_06775 0.53 -0.3
41,217 + MPMX19_06775 0.61 -1.0
41,218 - MPMX19_06775 0.62 -1.0
41,319 + MPMX19_06775 0.73 -0.3
41,319 + MPMX19_06775 0.73 -1.1
41,319 + MPMX19_06775 0.73 +0.1
41,320 - MPMX19_06775 0.73 +0.1
41,320 - MPMX19_06775 0.73 -1.2
41,320 - MPMX19_06775 0.73 -0.4
41,320 - MPMX19_06775 0.73 -1.5
41,320 - MPMX19_06775 0.73 -0.9
41,331 + MPMX19_06775 0.74 -0.5
41,331 + MPMX19_06775 0.74 -0.2
41,331 + MPMX19_06775 0.74 -1.3
41,331 + MPMX19_06775 0.74 -0.8
41,331 + MPMX19_06775 0.74 -0.2
41,331 + MPMX19_06775 0.74 -0.9
41,331 + MPMX19_06775 0.74 -1.8
41,331 + MPMX19_06775 0.74 -1.6
41,331 + MPMX19_06775 0.74 -0.6
41,331 + MPMX19_06775 0.74 -0.7
41,331 + MPMX19_06775 0.74 +0.2
41,331 + MPMX19_06775 0.74 -0.7
41,331 + MPMX19_06775 0.74 +0.3
41,331 + MPMX19_06775 0.74 +0.3
41,331 + MPMX19_06775 0.74 -0.9
41,332 - MPMX19_06775 0.74 -0.9
41,332 - MPMX19_06775 0.74 -1.1
41,332 - MPMX19_06775 0.74 -1.2
41,332 - MPMX19_06775 0.74 -0.7
41,332 - MPMX19_06775 0.74 -1.0
41,332 - MPMX19_06775 0.74 -1.1
41,332 - MPMX19_06775 0.74 -0.8
41,332 - MPMX19_06775 0.74 -0.1
41,332 - MPMX19_06775 0.74 +0.6
41,332 - MPMX19_06775 0.74 -0.1
41,332 - MPMX19_06775 0.74 -1.1
41,332 - MPMX19_06775 0.74 -1.5
41,332 - MPMX19_06775 0.74 +0.5
41,332 - MPMX19_06775 0.74 -1.1
41,496 + -0.5
41,496 + -0.8
41,496 + +0.1
41,496 + +0.0
41,496 + -0.0
41,496 + -1.3
41,496 + +0.5
41,497 - -0.4
41,497 - +0.5
41,497 - -0.5
41,627 + +0.5
41,638 + -2.6
41,639 - +0.4
41,639 - +0.5
41,639 - -0.7
41,937 - MPMX19_06776 0.58 -0.6
41,965 + MPMX19_06776 0.65 -0.7
41,965 + MPMX19_06776 0.65 -0.2
41,965 + MPMX19_06776 0.65 +0.5
42,028 + MPMX19_06776 0.80 -0.2
42,028 + MPMX19_06776 0.80 -0.1
42,028 + MPMX19_06776 0.80 +0.5
42,028 + MPMX19_06776 0.80 +0.3
42,028 + MPMX19_06776 0.80 -0.1
42,028 + MPMX19_06776 0.80 +0.2
42,028 + MPMX19_06776 0.80 -0.6
42,029 - MPMX19_06776 0.81 +0.7
42,029 - MPMX19_06776 0.81 +1.7
42,029 - MPMX19_06776 0.81 -0.0
42,029 - MPMX19_06776 0.81 -0.8
42,147 + -0.6
42,482 + MPMX19_06777 0.23 -0.1
42,483 - MPMX19_06777 0.23 -0.7
42,483 - MPMX19_06777 0.23 +0.6
42,696 + MPMX19_06777 0.54 -0.8

Or see this region's nucleotide sequence