Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06522

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06521 and MPMX19_06522 overlap by 1 nucleotidesMPMX19_06522 and MPMX19_06523 are separated by 34 nucleotides MPMX19_06521: MPMX19_06521 - Putative aliphatic sulfonates-binding protein, at 306,183 to 307,202 _06521 MPMX19_06522: MPMX19_06522 - Putative aliphatic sulfonates transport permease protein SsuC, at 307,202 to 307,945 _06522 MPMX19_06523: MPMX19_06523 - hypothetical protein, at 307,980 to 310,343 _06523 Position (kb) 307 308Strain fitness (log2 ratio) -2 -1 0 1 2at 306.223 kb on - strandat 306.223 kb on - strandat 306.223 kb on - strandat 306.357 kb on + strand, within MPMX19_06521at 306.357 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.471 kb on + strand, within MPMX19_06521at 306.471 kb on + strand, within MPMX19_06521at 306.522 kb on + strand, within MPMX19_06521at 306.522 kb on + strand, within MPMX19_06521at 306.523 kb on - strand, within MPMX19_06521at 306.843 kb on + strand, within MPMX19_06521at 306.843 kb on + strand, within MPMX19_06521at 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.217 kb on + strandat 307.217 kb on + strandat 307.217 kb on + strandat 307.218 kb on - strandat 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 308.028 kb on + strandat 308.028 kb on + strandat 308.028 kb on + strandat 308.028 kb on + strandat 308.121 kb on + strandat 308.121 kb on + strandat 308.229 kb on + strand, within MPMX19_06523at 308.229 kb on + strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.245 kb on - strand, within MPMX19_06523at 308.245 kb on - strand, within MPMX19_06523at 308.335 kb on - strand, within MPMX19_06523at 308.370 kb on + strand, within MPMX19_06523at 308.370 kb on + strand, within MPMX19_06523at 308.370 kb on + strand, within MPMX19_06523at 308.736 kb on + strand, within MPMX19_06523at 308.736 kb on + strand, within MPMX19_06523at 308.737 kb on - strand, within MPMX19_06523at 308.737 kb on - strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.766 kb on - strand, within MPMX19_06523at 308.766 kb on - strand, within MPMX19_06523at 308.766 kb on - strand, within MPMX19_06523at 308.862 kb on + strand, within MPMX19_06523at 308.862 kb on + strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.866 kb on - strand, within MPMX19_06523

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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306,223 - +0.4
306,223 - -0.5
306,223 - +0.2
306,357 + MPMX19_06521 0.17 -0.4
306,357 + MPMX19_06521 0.17 +0.2
306,450 + MPMX19_06521 0.26 -1.1
306,450 + MPMX19_06521 0.26 +0.3
306,450 + MPMX19_06521 0.26 -2.1
306,450 + MPMX19_06521 0.26 -0.3
306,450 + MPMX19_06521 0.26 -1.7
306,450 + MPMX19_06521 0.26 +0.7
306,450 + MPMX19_06521 0.26 -0.1
306,450 + MPMX19_06521 0.26 -0.3
306,450 + MPMX19_06521 0.26 +0.2
306,471 + MPMX19_06521 0.28 +0.5
306,471 + MPMX19_06521 0.28 -1.1
306,522 + MPMX19_06521 0.33 +0.1
306,522 + MPMX19_06521 0.33 +0.3
306,523 - MPMX19_06521 0.33 -0.8
306,843 + MPMX19_06521 0.65 -0.3
306,843 + MPMX19_06521 0.65 -0.9
307,179 + -0.3
307,179 + -0.7
307,179 + -0.3
307,179 + -1.1
307,179 + +0.1
307,179 + -0.7
307,217 + -1.3
307,217 + -0.1
307,217 + +0.3
307,218 - +0.0
307,283 + MPMX19_06522 0.11 +0.1
307,283 + MPMX19_06522 0.11 -1.1
307,283 + MPMX19_06522 0.11 -1.1
307,283 + MPMX19_06522 0.11 -1.0
307,283 + MPMX19_06522 0.11 -1.9
307,283 + MPMX19_06522 0.11 -1.3
307,691 + MPMX19_06522 0.66 -0.2
307,691 + MPMX19_06522 0.66 -0.4
307,691 + MPMX19_06522 0.66 -0.1
307,691 + MPMX19_06522 0.66 -2.0
308,028 + +0.9
308,028 + +0.2
308,028 + -1.1
308,028 + -0.5
308,121 + -0.1
308,121 + -1.8
308,229 + MPMX19_06523 0.11 -0.9
308,229 + MPMX19_06523 0.11 -0.9
308,230 - MPMX19_06523 0.11 +0.2
308,230 - MPMX19_06523 0.11 +0.0
308,230 - MPMX19_06523 0.11 +0.5
308,230 - MPMX19_06523 0.11 -0.6
308,230 - MPMX19_06523 0.11 -1.7
308,230 - MPMX19_06523 0.11 +1.0
308,230 - MPMX19_06523 0.11 -1.0
308,244 + MPMX19_06523 0.11 +0.1
308,244 + MPMX19_06523 0.11 -0.3
308,244 + MPMX19_06523 0.11 -0.0
308,244 + MPMX19_06523 0.11 -1.4
308,245 - MPMX19_06523 0.11 -0.7
308,245 - MPMX19_06523 0.11 -0.3
308,335 - MPMX19_06523 0.15 -1.2
308,370 + MPMX19_06523 0.16 -0.2
308,370 + MPMX19_06523 0.16 -0.6
308,370 + MPMX19_06523 0.16 -0.8
308,736 + MPMX19_06523 0.32 -0.5
308,736 + MPMX19_06523 0.32 +1.1
308,737 - MPMX19_06523 0.32 -0.3
308,737 - MPMX19_06523 0.32 +0.1
308,765 + MPMX19_06523 0.33 +0.8
308,765 + MPMX19_06523 0.33 -0.3
308,765 + MPMX19_06523 0.33 -0.4
308,765 + MPMX19_06523 0.33 -0.2
308,766 - MPMX19_06523 0.33 -0.1
308,766 - MPMX19_06523 0.33 -0.7
308,766 - MPMX19_06523 0.33 +0.2
308,862 + MPMX19_06523 0.37 -0.5
308,862 + MPMX19_06523 0.37 +0.3
308,863 - MPMX19_06523 0.37 -1.1
308,863 - MPMX19_06523 0.37 +1.9
308,863 - MPMX19_06523 0.37 -1.2
308,863 - MPMX19_06523 0.37 +0.7
308,863 - MPMX19_06523 0.37 -1.3
308,866 - MPMX19_06523 0.37 -1.3

Or see this region's nucleotide sequence