Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06266 and MPMX19_06267 are separated by 433 nucleotides MPMX19_06267 and MPMX19_06268 are separated by 92 nucleotides MPMX19_06268 and MPMX19_06269 are separated by 6 nucleotides MPMX19_06269 and MPMX19_06270 are separated by 134 nucleotides
MPMX19_06266: MPMX19_06266 - hypothetical protein, at 17,325 to 17,687
_06266
MPMX19_06267: MPMX19_06267 - hypothetical protein, at 18,121 to 18,384
_06267
MPMX19_06268: MPMX19_06268 - hypothetical protein, at 18,477 to 19,112
_06268
MPMX19_06269: MPMX19_06269 - IS110 family transposase ISHne4, at 19,119 to 19,652
_06269
MPMX19_06270: MPMX19_06270 - hypothetical protein, at 19,787 to 20,014
_06270
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.567 kb on + strand, within MPMX19_06266 at 17.921 kb on + strand at 17.922 kb on - strand at 17.922 kb on - strand at 17.995 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.058 kb on - strand at 18.123 kb on - strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.139 kb on - strand at 18.139 kb on - strand at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.268 kb on + strand, within MPMX19_06267 at 18.397 kb on - strand at 18.397 kb on - strand at 18.470 kb on + strand at 18.471 kb on - strand at 18.527 kb on + strand at 18.527 kb on + strand at 18.528 kb on - strand at 18.528 kb on - strand at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.890 kb on - strand, within MPMX19_06268 at 19.116 kb on + strand at 19.141 kb on + strand at 19.215 kb on - strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.316 kb on + strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.380 kb on + strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.477 kb on - strand, within MPMX19_06269 at 19.482 kb on - strand, within MPMX19_06269 at 19.482 kb on - strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.748 kb on + strand at 20.012 kb on + strand at 20.012 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.053 kb on + strand at 20.053 kb on + strand at 20.053 kb on + strand at 20.053 kb on + strand at 20.054 kb on - strand at 20.054 kb on - strand at 20.054 kb on - strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.075 kb on - strand at 20.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 17,567 + MPMX19_06266 0.67 +1.0 17,921 + -0.4 17,922 - -0.3 17,922 - -0.4 17,995 + -1.1 18,003 + -0.5 18,003 + -1.9 18,003 + -0.9 18,003 + +0.7 18,004 - -1.1 18,004 - -2.3 18,004 - -1.1 18,004 - -0.9 18,004 - -0.8 18,004 - -2.0 18,041 + -0.3 18,041 + -2.0 18,041 + -1.1 18,041 + +0.4 18,041 + -0.6 18,041 + +0.1 18,042 - -0.3 18,042 - -1.7 18,042 - -0.5 18,042 - -1.7 18,042 - +0.5 18,058 - -0.1 18,123 - -1.5 18,132 + -0.2 18,132 + -1.2 18,132 + +0.5 18,133 - -0.8 18,133 - -1.3 18,133 - +0.6 18,133 - -0.6 18,133 - +0.8 18,139 - +0.1 18,139 - +0.4 18,218 + MPMX19_06267 0.37 -1.7 18,218 + MPMX19_06267 0.37 +0.9 18,218 + MPMX19_06267 0.37 +0.9 18,218 + MPMX19_06267 0.37 -0.2 18,219 - MPMX19_06267 0.37 +0.8 18,219 - MPMX19_06267 0.37 -0.9 18,219 - MPMX19_06267 0.37 -0.3 18,219 - MPMX19_06267 0.37 -0.5 18,268 + MPMX19_06267 0.56 -0.7 18,397 - +0.1 18,397 - +0.7 18,470 + +0.1 18,471 - -0.0 18,527 + +0.2 18,527 + -0.3 18,528 - -0.1 18,528 - +1.7 18,560 + MPMX19_06268 0.13 -0.9 18,560 + MPMX19_06268 0.13 -1.0 18,560 + MPMX19_06268 0.13 +0.9 18,560 + MPMX19_06268 0.13 -1.5 18,560 + MPMX19_06268 0.13 +0.2 18,560 + MPMX19_06268 0.13 +0.5 18,560 + MPMX19_06268 0.13 +0.7 18,560 + MPMX19_06268 0.13 -0.4 18,560 + MPMX19_06268 0.13 -0.1 18,560 + MPMX19_06268 0.13 +0.7 18,561 - MPMX19_06268 0.13 +0.2 18,561 - MPMX19_06268 0.13 -0.0 18,561 - MPMX19_06268 0.13 +1.7 18,561 - MPMX19_06268 0.13 +2.4 18,727 + MPMX19_06268 0.39 +0.4 18,727 + MPMX19_06268 0.39 +1.9 18,727 + MPMX19_06268 0.39 +0.2 18,727 + MPMX19_06268 0.39 +0.6 18,727 + MPMX19_06268 0.39 -0.1 18,727 + MPMX19_06268 0.39 -0.7 18,728 - MPMX19_06268 0.39 -1.1 18,728 - MPMX19_06268 0.39 -0.7 18,728 - MPMX19_06268 0.39 -0.5 18,728 - MPMX19_06268 0.39 -1.0 18,728 - MPMX19_06268 0.39 +0.7 18,728 - MPMX19_06268 0.39 +1.1 18,763 + MPMX19_06268 0.45 -0.3 18,763 + MPMX19_06268 0.45 -0.9 18,763 + MPMX19_06268 0.45 -0.3 18,764 - MPMX19_06268 0.45 -0.5 18,764 - MPMX19_06268 0.45 -0.3 18,886 + MPMX19_06268 0.64 -0.5 18,886 + MPMX19_06268 0.64 +1.0 18,887 - MPMX19_06268 0.64 -0.3 18,887 - MPMX19_06268 0.64 -0.1 18,889 + MPMX19_06268 0.65 +1.0 18,889 + MPMX19_06268 0.65 -2.3 18,889 + MPMX19_06268 0.65 +0.3 18,890 - MPMX19_06268 0.65 +0.5 19,116 + -0.5 19,141 + -1.7 19,215 - MPMX19_06269 0.18 -0.1 19,297 + MPMX19_06269 0.33 +1.1 19,297 + MPMX19_06269 0.33 -0.6 19,297 + MPMX19_06269 0.33 -0.7 19,297 + MPMX19_06269 0.33 +0.4 19,297 + MPMX19_06269 0.33 -0.9 19,298 - MPMX19_06269 0.34 +1.1 19,298 - MPMX19_06269 0.34 -0.7 19,298 - MPMX19_06269 0.34 -0.5 19,298 - MPMX19_06269 0.34 -0.7 19,298 - MPMX19_06269 0.34 -0.3 19,298 - MPMX19_06269 0.34 -0.1 19,316 + MPMX19_06269 0.37 -1.1 19,317 - MPMX19_06269 0.37 +0.1 19,317 - MPMX19_06269 0.37 -0.3 19,380 + MPMX19_06269 0.49 -0.4 19,381 - MPMX19_06269 0.49 +0.8 19,381 - MPMX19_06269 0.49 -0.7 19,381 - MPMX19_06269 0.49 -0.7 19,477 - MPMX19_06269 0.67 -0.9 19,482 - MPMX19_06269 0.68 +0.3 19,482 - MPMX19_06269 0.68 -2.1 19,548 + MPMX19_06269 0.80 -0.1 19,548 + MPMX19_06269 0.80 +1.9 19,548 + MPMX19_06269 0.80 -0.3 19,548 + MPMX19_06269 0.80 +0.8 19,549 - MPMX19_06269 0.81 -0.5 19,549 - MPMX19_06269 0.81 +0.7 19,549 - MPMX19_06269 0.81 +0.9 19,549 - MPMX19_06269 0.81 -0.6 19,549 - MPMX19_06269 0.81 -0.9 19,549 - MPMX19_06269 0.81 -1.1 19,748 + +0.1 20,012 + -0.3 20,012 + -0.7 20,051 + -0.3 20,051 + -0.5 20,051 + -0.5 20,051 + +0.6 20,051 + -0.7 20,052 - -0.7 20,052 - -0.8 20,052 - +0.6 20,053 + -0.9 20,053 + +0.4 20,053 + +0.3 20,053 + -1.5 20,054 - -0.8 20,054 - -3.2 20,054 - +1.9 20,066 + +0.5 20,066 + +0.2 20,066 + -0.9 20,066 + -0.3 20,066 + +1.1 20,066 + +0.4 20,066 + +1.1 20,066 + -1.5 20,066 + -0.1 20,066 + -0.2 20,066 + -0.5 20,066 + +0.8 20,066 + +0.7 20,066 + +0.3 20,066 + -0.2 20,066 + +1.7 20,066 + +0.0 20,066 + +1.0 20,066 + -0.6 20,067 - -1.0 20,067 - -2.1 20,067 - -1.5 20,067 - -0.1 20,067 - -1.9 20,067 - -0.6 20,067 - -1.5 20,067 - -0.9 20,067 - -0.5 20,067 - -0.5 20,067 - +0.7 20,067 - -2.1 20,067 - -0.8 20,067 - +0.7 20,067 - +0.4 20,067 - +0.1 20,067 - +0.5 20,075 - -0.7 20,075 - -1.1
Or see this region's nucleotide sequence