Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05955 and MPMX19_05956 are separated by 107 nucleotides MPMX19_05956 and MPMX19_05957 are separated by 147 nucleotides MPMX19_05957 and MPMX19_05958 are separated by 169 nucleotides
MPMX19_05955: MPMX19_05955 - Riboflavin transporter, at 103,582 to 104,520
_05955
MPMX19_05956: MPMX19_05956 - hypothetical protein, at 104,628 to 105,179
_05956
MPMX19_05957: MPMX19_05957 - hypothetical protein, at 105,327 to 105,938
_05957
MPMX19_05958: MPMX19_05958 - hypothetical protein, at 106,108 to 107,697
_05958
Position (kb) 105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 104.534 kb on + strand at 104.534 kb on + strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.607 kb on + strand at 104.607 kb on + strand at 104.607 kb on + strand at 104.608 kb on - strand at 104.728 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.868 kb on - strand, within MPMX19_05956 at 105.232 kb on + strand at 105.232 kb on + strand at 105.233 kb on - strand at 105.233 kb on - strand at 105.244 kb on - strand at 105.352 kb on + strand at 105.353 kb on - strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.460 kb on + strand, within MPMX19_05957 at 105.460 kb on + strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.693 kb on - strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.961 kb on + strand at 105.962 kb on - strand at 105.962 kb on - strand at 105.962 kb on - strand at 105.962 kb on - strand at 105.962 kb on - strand at 106.001 kb on + strand at 106.001 kb on + strand at 106.001 kb on + strand at 106.001 kb on + strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.036 kb on - strand at 106.036 kb on - strand at 106.044 kb on + strand at 106.044 kb on + strand at 106.045 kb on - strand at 106.045 kb on - strand at 106.050 kb on + strand at 106.050 kb on + strand at 106.050 kb on + strand at 106.051 kb on - strand at 106.051 kb on - strand at 106.051 kb on - strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.316 kb on - strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.405 kb on + strand, within MPMX19_05958 at 106.406 kb on - strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 104,534 + -0.3 104,534 + +0.1 104,535 - -0.5 104,535 - +0.4 104,535 - -0.7 104,535 - +0.7 104,535 - +0.5 104,607 + -0.1 104,607 + -0.3 104,607 + -1.0 104,608 - -1.5 104,728 + MPMX19_05956 0.18 -0.9 104,866 + MPMX19_05956 0.43 -0.0 104,866 + MPMX19_05956 0.43 -0.8 104,866 + MPMX19_05956 0.43 +0.4 104,866 + MPMX19_05956 0.43 -0.8 104,866 + MPMX19_05956 0.43 -0.1 104,866 + MPMX19_05956 0.43 +1.2 104,866 + MPMX19_05956 0.43 -0.9 104,866 + MPMX19_05956 0.43 -0.6 104,866 + MPMX19_05956 0.43 +0.0 104,866 + MPMX19_05956 0.43 +1.3 104,866 + MPMX19_05956 0.43 -1.0 104,866 + MPMX19_05956 0.43 +0.3 104,866 + MPMX19_05956 0.43 +0.6 104,866 + MPMX19_05956 0.43 -1.6 104,867 - MPMX19_05956 0.43 -1.8 104,867 - MPMX19_05956 0.43 -1.1 104,867 - MPMX19_05956 0.43 -0.1 104,867 - MPMX19_05956 0.43 -0.6 104,867 - MPMX19_05956 0.43 -0.8 104,867 - MPMX19_05956 0.43 -0.9 104,867 - MPMX19_05956 0.43 -1.8 104,867 - MPMX19_05956 0.43 -1.9 104,867 - MPMX19_05956 0.43 -2.0 104,867 - MPMX19_05956 0.43 -1.3 104,867 - MPMX19_05956 0.43 -0.1 104,867 - MPMX19_05956 0.43 -0.6 104,867 - MPMX19_05956 0.43 +1.7 104,867 - MPMX19_05956 0.43 +0.5 104,868 - MPMX19_05956 0.43 -1.2 105,232 + -0.4 105,232 + -2.0 105,233 - +0.7 105,233 - -0.4 105,244 - +0.1 105,352 + -0.5 105,353 - +0.4 105,355 + -0.6 105,355 + -0.6 105,355 + -0.8 105,355 + +0.8 105,355 + -1.6 105,355 + -2.3 105,355 + -0.6 105,356 - -0.4 105,356 - +0.1 105,356 - +0.1 105,356 - -1.0 105,356 - +0.8 105,356 - +0.5 105,356 - -0.1 105,424 + MPMX19_05957 0.16 -0.0 105,424 + MPMX19_05957 0.16 -1.5 105,424 + MPMX19_05957 0.16 -0.1 105,424 + MPMX19_05957 0.16 +0.5 105,425 - MPMX19_05957 0.16 +0.6 105,425 - MPMX19_05957 0.16 +0.8 105,425 - MPMX19_05957 0.16 -1.1 105,425 - MPMX19_05957 0.16 +0.4 105,425 - MPMX19_05957 0.16 -0.4 105,425 - MPMX19_05957 0.16 -0.1 105,425 - MPMX19_05957 0.16 -0.2 105,460 + MPMX19_05957 0.22 -0.2 105,460 + MPMX19_05957 0.22 +0.3 105,461 - MPMX19_05957 0.22 -1.6 105,461 - MPMX19_05957 0.22 +0.1 105,461 - MPMX19_05957 0.22 -1.0 105,691 + MPMX19_05957 0.59 -0.6 105,691 + MPMX19_05957 0.59 -1.2 105,691 + MPMX19_05957 0.59 -1.6 105,691 + MPMX19_05957 0.59 +0.5 105,691 + MPMX19_05957 0.59 +0.1 105,691 + MPMX19_05957 0.59 -0.0 105,691 + MPMX19_05957 0.59 -0.4 105,691 + MPMX19_05957 0.59 -0.8 105,691 + MPMX19_05957 0.59 -0.6 105,691 + MPMX19_05957 0.59 +0.2 105,691 + MPMX19_05957 0.59 +0.5 105,691 + MPMX19_05957 0.59 +0.5 105,691 + MPMX19_05957 0.59 -0.9 105,691 + MPMX19_05957 0.59 -0.6 105,691 + MPMX19_05957 0.59 -1.4 105,691 + MPMX19_05957 0.59 -1.7 105,691 + MPMX19_05957 0.59 -0.5 105,691 + MPMX19_05957 0.59 +1.3 105,692 - MPMX19_05957 0.60 +0.7 105,692 - MPMX19_05957 0.60 +0.5 105,692 - MPMX19_05957 0.60 -1.0 105,692 - MPMX19_05957 0.60 +1.3 105,692 - MPMX19_05957 0.60 +0.7 105,692 - MPMX19_05957 0.60 -0.3 105,692 - MPMX19_05957 0.60 -0.8 105,692 - MPMX19_05957 0.60 -1.0 105,692 - MPMX19_05957 0.60 -0.1 105,692 - MPMX19_05957 0.60 -0.0 105,692 - MPMX19_05957 0.60 -0.1 105,692 - MPMX19_05957 0.60 -0.0 105,692 - MPMX19_05957 0.60 -0.4 105,692 - MPMX19_05957 0.60 +0.4 105,692 - MPMX19_05957 0.60 +0.2 105,692 - MPMX19_05957 0.60 +2.3 105,693 - MPMX19_05957 0.60 -0.3 105,781 + MPMX19_05957 0.74 +0.7 105,781 + MPMX19_05957 0.74 -0.6 105,781 + MPMX19_05957 0.74 +0.3 105,781 + MPMX19_05957 0.74 +0.7 105,782 - MPMX19_05957 0.74 -0.1 105,782 - MPMX19_05957 0.74 +0.7 105,782 - MPMX19_05957 0.74 -1.2 105,782 - MPMX19_05957 0.74 +0.3 105,782 - MPMX19_05957 0.74 -0.1 105,782 - MPMX19_05957 0.74 +0.3 105,782 - MPMX19_05957 0.74 -1.9 105,961 + +1.3 105,962 - -0.1 105,962 - -0.0 105,962 - +0.2 105,962 - -1.3 105,962 - +1.1 106,001 + -0.6 106,001 + -1.3 106,001 + -1.5 106,001 + -0.8 106,002 - -0.5 106,002 - -0.5 106,002 - -0.8 106,002 - +0.3 106,002 - -0.5 106,002 - -0.1 106,002 - +0.1 106,002 - -1.3 106,002 - -0.3 106,003 + -0.3 106,003 + -2.3 106,003 + -0.8 106,003 + -0.9 106,003 + -0.8 106,003 + +0.3 106,003 + -1.0 106,003 + -1.1 106,003 + +0.2 106,003 + -0.6 106,003 + +0.1 106,003 + -0.2 106,004 - +0.0 106,004 - -0.6 106,004 - -0.1 106,004 - -0.3 106,004 - +0.2 106,004 - -1.5 106,004 - +0.8 106,004 - -0.1 106,035 + -0.6 106,035 + +0.2 106,035 + +0.6 106,035 + -2.2 106,035 + -0.9 106,036 - +0.2 106,036 - -0.3 106,044 + -1.1 106,044 + +0.2 106,045 - -0.5 106,045 - -0.3 106,050 + -1.0 106,050 + -1.1 106,050 + -0.3 106,051 - -1.9 106,051 - -0.1 106,051 - -0.1 106,117 + -0.2 106,117 + -0.7 106,117 + -0.6 106,117 + -0.4 106,117 + -0.2 106,117 + +0.5 106,117 + -0.1 106,117 + -2.1 106,117 + -1.5 106,117 + -1.1 106,117 + -0.8 106,118 - -0.1 106,118 - +0.4 106,118 - -0.5 106,118 - -1.6 106,118 - -0.6 106,118 - -1.9 106,118 - -0.9 106,118 - -1.6 106,118 - -0.3 106,122 + +0.1 106,122 + +0.6 106,122 + +0.5 106,122 + +0.7 106,122 + -0.3 106,122 + -1.5 106,122 + -1.4 106,122 + +0.6 106,122 + +0.7 106,122 + -0.5 106,122 + +0.1 106,122 + +0.1 106,122 + +0.9 106,122 + -1.9 106,122 + -1.2 106,123 - -0.7 106,123 - +0.1 106,123 - -1.9 106,123 - +0.5 106,123 - -0.3 106,123 - -0.3 106,123 - -1.0 106,123 - +0.2 106,123 - -0.6 106,123 - -0.3 106,123 - -0.6 106,123 - -0.2 106,316 - MPMX19_05958 0.13 -0.1 106,321 + MPMX19_05958 0.13 -2.7 106,321 + MPMX19_05958 0.13 -0.4 106,321 + MPMX19_05958 0.13 -0.5 106,321 + MPMX19_05958 0.13 +0.9 106,322 - MPMX19_05958 0.13 +0.8 106,322 - MPMX19_05958 0.13 -0.5 106,322 - MPMX19_05958 0.13 -1.2 106,322 - MPMX19_05958 0.13 -1.1 106,405 + MPMX19_05958 0.19 -1.0 106,406 - MPMX19_05958 0.19 -0.5 106,912 + MPMX19_05958 0.51 -0.2 106,912 + MPMX19_05958 0.51 -0.6 106,912 + MPMX19_05958 0.51 +0.3 106,912 + MPMX19_05958 0.51 +0.4 106,912 + MPMX19_05958 0.51 -0.0 106,912 + MPMX19_05958 0.51 +0.6 106,912 + MPMX19_05958 0.51 -0.3 106,912 + MPMX19_05958 0.51 +0.4 106,912 + MPMX19_05958 0.51 -1.3 106,912 + MPMX19_05958 0.51 -0.6 106,912 + MPMX19_05958 0.51 -1.6 106,912 + MPMX19_05958 0.51 +0.2 106,912 + MPMX19_05958 0.51 +0.1 106,912 + MPMX19_05958 0.51 -0.2 106,913 - MPMX19_05958 0.51 -0.2 106,913 - MPMX19_05958 0.51 +0.3 106,913 - MPMX19_05958 0.51 +0.0 106,913 - MPMX19_05958 0.51 +0.4 106,913 - MPMX19_05958 0.51 +0.4 106,913 - MPMX19_05958 0.51 +0.3 106,913 - MPMX19_05958 0.51 +1.7 106,913 - MPMX19_05958 0.51 +0.1 106,913 - MPMX19_05958 0.51 -1.8 106,913 - MPMX19_05958 0.51 -2.4
Or see this region's nucleotide sequence