Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05742

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05741 and MPMX19_05742 are separated by 236 nucleotidesMPMX19_05742 and MPMX19_05743 overlap by 4 nucleotidesMPMX19_05743 and MPMX19_05744 are separated by 17 nucleotides MPMX19_05741: MPMX19_05741 - hypothetical protein, at 457,316 to 458,698 _05741 MPMX19_05742: MPMX19_05742 - hypothetical protein, at 458,935 to 459,600 _05742 MPMX19_05743: MPMX19_05743 - Anti-sigma-E factor ChrR, at 459,597 to 460,325 _05743 MPMX19_05744: MPMX19_05744 - hypothetical protein, at 460,343 to 462,427 _05744 Position (kb) 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.019 kb on + strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.020 kb on - strand, within MPMX19_05741at 458.289 kb on + strand, within MPMX19_05741at 458.289 kb on + strand, within MPMX19_05741at 458.289 kb on + strand, within MPMX19_05741at 458.289 kb on + strand, within MPMX19_05741at 458.290 kb on - strand, within MPMX19_05741at 458.290 kb on - strand, within MPMX19_05741at 458.290 kb on - strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.382 kb on + strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.383 kb on - strand, within MPMX19_05741at 458.493 kb on + strand, within MPMX19_05741at 458.493 kb on + strand, within MPMX19_05741at 458.493 kb on + strand, within MPMX19_05741at 458.493 kb on + strand, within MPMX19_05741at 458.494 kb on - strand, within MPMX19_05741at 458.577 kb on + strandat 458.577 kb on + strandat 458.577 kb on + strandat 458.577 kb on + strandat 458.577 kb on + strandat 458.578 kb on - strandat 458.578 kb on - strandat 458.578 kb on - strandat 458.578 kb on - strandat 458.730 kb on - strandat 458.781 kb on - strandat 458.794 kb on - strandat 458.794 kb on - strandat 458.815 kb on + strandat 458.997 kb on + strandat 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.241 kb on + strand, within MPMX19_05742at 459.241 kb on + strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 460.044 kb on - strand, within MPMX19_05743at 460.170 kb on + strand, within MPMX19_05743at 460.171 kb on - strand, within MPMX19_05743at 460.323 kb on + strandat 460.324 kb on - strandat 460.324 kb on - strandat 460.324 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
458,019 + MPMX19_05741 0.51 -0.8
458,019 + MPMX19_05741 0.51 +0.5
458,019 + MPMX19_05741 0.51 -0.9
458,019 + MPMX19_05741 0.51 -2.1
458,019 + MPMX19_05741 0.51 -0.3
458,019 + MPMX19_05741 0.51 +0.4
458,019 + MPMX19_05741 0.51 -1.2
458,019 + MPMX19_05741 0.51 +0.6
458,019 + MPMX19_05741 0.51 -0.4
458,019 + MPMX19_05741 0.51 -0.9
458,019 + MPMX19_05741 0.51 -1.2
458,019 + MPMX19_05741 0.51 -0.0
458,019 + MPMX19_05741 0.51 +0.1
458,019 + MPMX19_05741 0.51 -0.1
458,019 + MPMX19_05741 0.51 -0.2
458,019 + MPMX19_05741 0.51 -0.3
458,019 + MPMX19_05741 0.51 +0.6
458,019 + MPMX19_05741 0.51 -1.3
458,019 + MPMX19_05741 0.51 +0.0
458,019 + MPMX19_05741 0.51 +0.2
458,019 + MPMX19_05741 0.51 -0.4
458,019 + MPMX19_05741 0.51 +0.3
458,019 + MPMX19_05741 0.51 +0.5
458,019 + MPMX19_05741 0.51 -0.0
458,019 + MPMX19_05741 0.51 -0.4
458,019 + MPMX19_05741 0.51 -0.6
458,019 + MPMX19_05741 0.51 -0.0
458,019 + MPMX19_05741 0.51 -0.0
458,019 + MPMX19_05741 0.51 +0.4
458,019 + MPMX19_05741 0.51 -0.7
458,019 + MPMX19_05741 0.51 +0.7
458,019 + MPMX19_05741 0.51 +0.3
458,020 - MPMX19_05741 0.51 -0.0
458,020 - MPMX19_05741 0.51 -0.7
458,020 - MPMX19_05741 0.51 -1.0
458,020 - MPMX19_05741 0.51 -0.2
458,020 - MPMX19_05741 0.51 -0.5
458,020 - MPMX19_05741 0.51 +0.7
458,020 - MPMX19_05741 0.51 +1.0
458,020 - MPMX19_05741 0.51 +0.1
458,020 - MPMX19_05741 0.51 -0.5
458,020 - MPMX19_05741 0.51 -1.0
458,020 - MPMX19_05741 0.51 +0.6
458,020 - MPMX19_05741 0.51 -2.2
458,020 - MPMX19_05741 0.51 -0.4
458,020 - MPMX19_05741 0.51 +0.7
458,020 - MPMX19_05741 0.51 -1.0
458,020 - MPMX19_05741 0.51 -0.1
458,020 - MPMX19_05741 0.51 -1.2
458,020 - MPMX19_05741 0.51 -0.0
458,289 + MPMX19_05741 0.70 -0.6
458,289 + MPMX19_05741 0.70 +0.6
458,289 + MPMX19_05741 0.70 +0.1
458,289 + MPMX19_05741 0.70 +0.3
458,290 - MPMX19_05741 0.70 +0.2
458,290 - MPMX19_05741 0.70 -1.7
458,290 - MPMX19_05741 0.70 -0.0
458,382 + MPMX19_05741 0.77 -1.5
458,382 + MPMX19_05741 0.77 -1.1
458,382 + MPMX19_05741 0.77 +0.7
458,382 + MPMX19_05741 0.77 -1.8
458,382 + MPMX19_05741 0.77 -0.2
458,382 + MPMX19_05741 0.77 -1.4
458,382 + MPMX19_05741 0.77 -1.2
458,382 + MPMX19_05741 0.77 -1.0
458,383 - MPMX19_05741 0.77 -2.1
458,383 - MPMX19_05741 0.77 -0.4
458,383 - MPMX19_05741 0.77 -0.6
458,383 - MPMX19_05741 0.77 -0.6
458,383 - MPMX19_05741 0.77 -0.4
458,383 - MPMX19_05741 0.77 -1.3
458,383 - MPMX19_05741 0.77 -0.7
458,383 - MPMX19_05741 0.77 +0.4
458,383 - MPMX19_05741 0.77 -1.2
458,383 - MPMX19_05741 0.77 +0.6
458,383 - MPMX19_05741 0.77 -1.4
458,383 - MPMX19_05741 0.77 -0.3
458,493 + MPMX19_05741 0.85 -0.5
458,493 + MPMX19_05741 0.85 -1.1
458,493 + MPMX19_05741 0.85 +0.3
458,493 + MPMX19_05741 0.85 +0.4
458,494 - MPMX19_05741 0.85 +0.4
458,577 + -0.7
458,577 + -0.9
458,577 + +0.5
458,577 + -1.4
458,577 + +0.9
458,578 - -0.1
458,578 - +0.4
458,578 - +0.4
458,578 - +0.6
458,730 - +0.8
458,781 - -2.1
458,794 - -1.4
458,794 - -1.0
458,815 + -2.1
458,997 + +0.1
459,154 + MPMX19_05742 0.33 -1.0
459,154 + MPMX19_05742 0.33 -0.4
459,154 + MPMX19_05742 0.33 -0.4
459,154 + MPMX19_05742 0.33 -1.1
459,154 + MPMX19_05742 0.33 +3.9
459,154 + MPMX19_05742 0.33 -0.3
459,154 + MPMX19_05742 0.33 -0.7
459,154 + MPMX19_05742 0.33 -0.4
459,154 + MPMX19_05742 0.33 +0.3
459,154 + MPMX19_05742 0.33 +0.4
459,154 + MPMX19_05742 0.33 -0.5
459,154 + MPMX19_05742 0.33 +0.1
459,154 + MPMX19_05742 0.33 -0.9
459,154 + MPMX19_05742 0.33 -0.2
459,154 + MPMX19_05742 0.33 -0.4
459,154 + MPMX19_05742 0.33 -0.5
459,154 + MPMX19_05742 0.33 -1.1
459,154 + MPMX19_05742 0.33 -2.6
459,154 + MPMX19_05742 0.33 -0.9
459,154 + MPMX19_05742 0.33 -2.2
459,154 + MPMX19_05742 0.33 -0.4
459,154 + MPMX19_05742 0.33 +0.2
459,154 + MPMX19_05742 0.33 -0.5
459,155 - MPMX19_05742 0.33 -2.7
459,155 - MPMX19_05742 0.33 -1.9
459,155 - MPMX19_05742 0.33 -0.7
459,155 - MPMX19_05742 0.33 -0.4
459,155 - MPMX19_05742 0.33 -0.7
459,155 - MPMX19_05742 0.33 -0.5
459,155 - MPMX19_05742 0.33 -0.4
459,155 - MPMX19_05742 0.33 -1.6
459,155 - MPMX19_05742 0.33 -0.7
459,155 - MPMX19_05742 0.33 -0.0
459,155 - MPMX19_05742 0.33 -1.4
459,155 - MPMX19_05742 0.33 -0.9
459,155 - MPMX19_05742 0.33 -0.2
459,155 - MPMX19_05742 0.33 +1.1
459,155 - MPMX19_05742 0.33 -0.4
459,155 - MPMX19_05742 0.33 -0.6
459,155 - MPMX19_05742 0.33 -1.1
459,155 - MPMX19_05742 0.33 -0.3
459,155 - MPMX19_05742 0.33 -0.8
459,155 - MPMX19_05742 0.33 -0.2
459,155 - MPMX19_05742 0.33 -2.9
459,155 - MPMX19_05742 0.33 -2.3
459,155 - MPMX19_05742 0.33 -1.0
459,241 + MPMX19_05742 0.46 -0.2
459,241 + MPMX19_05742 0.46 -2.9
459,242 - MPMX19_05742 0.46 +1.1
459,242 - MPMX19_05742 0.46 -0.4
459,242 - MPMX19_05742 0.46 -0.5
459,242 - MPMX19_05742 0.46 -0.2
459,242 - MPMX19_05742 0.46 -1.5
459,242 - MPMX19_05742 0.46 -1.7
459,672 + MPMX19_05743 0.10 -0.5
459,672 + MPMX19_05743 0.10 -0.9
459,672 + MPMX19_05743 0.10 -0.7
459,672 + MPMX19_05743 0.10 -0.4
459,672 + MPMX19_05743 0.10 -1.7
459,672 + MPMX19_05743 0.10 -0.3
459,672 + MPMX19_05743 0.10 +1.0
459,673 - MPMX19_05743 0.10 +0.4
459,673 - MPMX19_05743 0.10 -0.3
459,673 - MPMX19_05743 0.10 -0.4
459,969 + MPMX19_05743 0.51 -1.8
459,969 + MPMX19_05743 0.51 -1.6
459,969 + MPMX19_05743 0.51 -1.2
459,969 + MPMX19_05743 0.51 +0.1
459,969 + MPMX19_05743 0.51 -0.4
459,969 + MPMX19_05743 0.51 +0.1
459,969 + MPMX19_05743 0.51 -0.6
459,969 + MPMX19_05743 0.51 -1.3
459,969 + MPMX19_05743 0.51 +0.4
459,969 + MPMX19_05743 0.51 +1.3
459,969 + MPMX19_05743 0.51 +0.7
459,969 + MPMX19_05743 0.51 +1.1
459,969 + MPMX19_05743 0.51 -0.8
459,969 + MPMX19_05743 0.51 -0.5
459,970 - MPMX19_05743 0.51 -0.6
459,970 - MPMX19_05743 0.51 -1.7
459,970 - MPMX19_05743 0.51 +0.2
459,970 - MPMX19_05743 0.51 +1.2
459,970 - MPMX19_05743 0.51 +0.4
459,970 - MPMX19_05743 0.51 +0.2
459,970 - MPMX19_05743 0.51 +0.4
459,970 - MPMX19_05743 0.51 -0.2
459,970 - MPMX19_05743 0.51 -0.4
459,970 - MPMX19_05743 0.51 +1.8
459,970 - MPMX19_05743 0.51 -0.9
459,970 - MPMX19_05743 0.51 -1.8
459,970 - MPMX19_05743 0.51 -0.1
459,970 - MPMX19_05743 0.51 +1.2
459,970 - MPMX19_05743 0.51 -3.0
459,970 - MPMX19_05743 0.51 -1.1
459,970 - MPMX19_05743 0.51 -0.8
459,970 - MPMX19_05743 0.51 +0.8
459,970 - MPMX19_05743 0.51 +0.5
460,044 - MPMX19_05743 0.61 +1.1
460,170 + MPMX19_05743 0.79 -0.0
460,171 - MPMX19_05743 0.79 -0.6
460,323 + -1.6
460,324 - -0.6
460,324 - -3.2
460,324 - -0.2

Or see this region's nucleotide sequence