Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05021

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05020 and MPMX19_05021 are separated by 132 nucleotidesMPMX19_05021 and MPMX19_05022 are separated by 440 nucleotides MPMX19_05020: MPMX19_05020 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 503,011 to 505,011 _05020 MPMX19_05021: MPMX19_05021 - Methylmalonyl-CoA mutase, at 505,144 to 507,297 _05021 MPMX19_05022: MPMX19_05022 - hypothetical protein, at 507,738 to 508,430 _05022 Position (kb) 505 506 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.154 kb on + strand, within MPMX19_05020at 504.155 kb on - strand, within MPMX19_05020at 504.155 kb on - strand, within MPMX19_05020at 504.157 kb on + strand, within MPMX19_05020at 504.158 kb on - strand, within MPMX19_05020at 504.158 kb on - strand, within MPMX19_05020at 504.241 kb on + strand, within MPMX19_05020at 504.241 kb on + strand, within MPMX19_05020at 504.241 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.244 kb on + strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.245 kb on - strand, within MPMX19_05020at 504.346 kb on + strand, within MPMX19_05020at 504.346 kb on + strand, within MPMX19_05020at 504.571 kb on + strand, within MPMX19_05020at 504.571 kb on + strand, within MPMX19_05020at 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.015 kb on + strandat 505.016 kb on - strandat 505.016 kb on - strandat 505.017 kb on + strandat 505.017 kb on + strandat 505.017 kb on + strandat 505.017 kb on + strandat 505.017 kb on + strandat 505.018 kb on - strandat 505.018 kb on - strandat 505.018 kb on - strandat 505.018 kb on - strandat 505.018 kb on - strandat 505.023 kb on + strandat 505.023 kb on + strandat 505.023 kb on + strandat 505.023 kb on + strandat 505.023 kb on + strandat 505.024 kb on - strandat 505.024 kb on - strandat 505.024 kb on - strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.110 kb on + strandat 505.111 kb on - strandat 505.111 kb on - strandat 505.111 kb on - strandat 505.111 kb on - strandat 505.111 kb on - strandat 505.111 kb on - strandat 505.121 kb on + strandat 505.121 kb on + strandat 505.121 kb on + strandat 505.121 kb on + strandat 505.122 kb on - strandat 505.122 kb on - strandat 505.270 kb on + strandat 505.270 kb on + strandat 505.271 kb on - strandat 505.271 kb on - strandat 505.354 kb on + strandat 505.354 kb on + strandat 505.355 kb on - strandat 505.355 kb on - strandat 505.355 kb on - strandat 505.384 kb on + strand, within MPMX19_05021at 505.385 kb on - strand, within MPMX19_05021at 505.423 kb on + strand, within MPMX19_05021at 505.424 kb on - strand, within MPMX19_05021at 505.424 kb on - strand, within MPMX19_05021at 505.424 kb on - strand, within MPMX19_05021at 505.651 kb on + strand, within MPMX19_05021at 505.651 kb on + strand, within MPMX19_05021at 505.651 kb on + strand, within MPMX19_05021at 505.652 kb on - strand, within MPMX19_05021at 505.723 kb on - strand, within MPMX19_05021at 505.747 kb on + strand, within MPMX19_05021at 505.747 kb on + strand, within MPMX19_05021at 505.747 kb on + strand, within MPMX19_05021at 505.747 kb on + strand, within MPMX19_05021at 505.747 kb on + strand, within MPMX19_05021at 505.748 kb on - strand, within MPMX19_05021at 505.748 kb on - strand, within MPMX19_05021at 505.748 kb on - strand, within MPMX19_05021at 505.748 kb on - strand, within MPMX19_05021at 505.753 kb on + strand, within MPMX19_05021at 505.754 kb on - strand, within MPMX19_05021at 505.798 kb on + strand, within MPMX19_05021at 505.798 kb on + strand, within MPMX19_05021at 505.798 kb on + strand, within MPMX19_05021at 505.799 kb on - strand, within MPMX19_05021at 505.799 kb on - strand, within MPMX19_05021at 505.915 kb on + strand, within MPMX19_05021at 505.915 kb on + strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 505.916 kb on - strand, within MPMX19_05021at 506.146 kb on + strand, within MPMX19_05021at 506.146 kb on + strand, within MPMX19_05021at 506.146 kb on + strand, within MPMX19_05021at 506.147 kb on - strand, within MPMX19_05021at 506.147 kb on - strand, within MPMX19_05021at 506.147 kb on - strand, within MPMX19_05021at 506.344 kb on + strand, within MPMX19_05021at 506.344 kb on + strand, within MPMX19_05021at 506.344 kb on + strand, within MPMX19_05021at 506.344 kb on + strand, within MPMX19_05021at 506.345 kb on - strand, within MPMX19_05021at 506.345 kb on - strand, within MPMX19_05021at 506.345 kb on - strand, within MPMX19_05021at 506.530 kb on + strand, within MPMX19_05021at 506.530 kb on + strand, within MPMX19_05021at 506.530 kb on + strand, within MPMX19_05021at 506.530 kb on + strand, within MPMX19_05021at 506.531 kb on - strand, within MPMX19_05021at 506.531 kb on - strand, within MPMX19_05021at 506.531 kb on - strand, within MPMX19_05021at 506.815 kb on + strand, within MPMX19_05021at 506.827 kb on + strand, within MPMX19_05021at 506.827 kb on + strand, within MPMX19_05021at 506.828 kb on - strand, within MPMX19_05021at 506.828 kb on - strand, within MPMX19_05021at 507.197 kb on - strandat 507.197 kb on - strandat 507.220 kb on + strandat 507.220 kb on + strandat 507.220 kb on + strandat 507.221 kb on - strandat 507.221 kb on - strandat 507.221 kb on - strandat 507.221 kb on - strandat 507.221 kb on - strandat 507.221 kb on - strandat 507.221 kb on - strandat 507.221 kb on - strandat 507.291 kb on + strandat 507.362 kb on + strandat 507.420 kb on + strandat 507.420 kb on + strandat 507.420 kb on + strandat 507.420 kb on + strandat 507.420 kb on + strandat 507.421 kb on - strandat 507.421 kb on - strandat 507.421 kb on - strandat 507.421 kb on - strandat 507.421 kb on - strandat 507.421 kb on - strandat 507.421 kb on - strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.441 kb on + strandat 507.442 kb on - strandat 507.442 kb on - strandat 507.442 kb on - strandat 507.442 kb on - strandat 507.442 kb on - strandat 507.442 kb on - strandat 507.442 kb on - strandat 507.442 kb on - strandat 507.461 kb on + strandat 507.462 kb on - strandat 507.474 kb on + strandat 507.474 kb on + strandat 507.475 kb on - strandat 507.475 kb on - strandat 507.475 kb on - strandat 507.475 kb on - strandat 507.765 kb on + strandat 507.766 kb on - strandat 507.766 kb on - strandat 507.766 kb on - strandat 507.766 kb on - strandat 507.766 kb on - strandat 507.801 kb on + strandat 507.801 kb on + strandat 507.802 kb on - strandat 507.945 kb on + strand, within MPMX19_05022at 507.945 kb on + strand, within MPMX19_05022at 507.945 kb on + strand, within MPMX19_05022at 507.945 kb on + strand, within MPMX19_05022at 507.945 kb on + strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 507.946 kb on - strand, within MPMX19_05022at 508.104 kb on + strand, within MPMX19_05022at 508.104 kb on + strand, within MPMX19_05022at 508.104 kb on + strand, within MPMX19_05022at 508.104 kb on + strand, within MPMX19_05022at 508.105 kb on - strand, within MPMX19_05022at 508.105 kb on - strand, within MPMX19_05022at 508.105 kb on - strand, within MPMX19_05022at 508.105 kb on - strand, within MPMX19_05022at 508.105 kb on - strand, within MPMX19_05022at 508.121 kb on + strand, within MPMX19_05022at 508.121 kb on + strand, within MPMX19_05022at 508.121 kb on + strand, within MPMX19_05022at 508.122 kb on - strand, within MPMX19_05022at 508.122 kb on - strand, within MPMX19_05022

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
504,154 + MPMX19_05020 0.57 -1.6
504,154 + MPMX19_05020 0.57 +0.1
504,154 + MPMX19_05020 0.57 +0.5
504,154 + MPMX19_05020 0.57 +3.1
504,154 + MPMX19_05020 0.57 -0.1
504,154 + MPMX19_05020 0.57 -0.2
504,154 + MPMX19_05020 0.57 +1.6
504,154 + MPMX19_05020 0.57 -0.3
504,154 + MPMX19_05020 0.57 -1.8
504,155 - MPMX19_05020 0.57 -0.6
504,155 - MPMX19_05020 0.57 +1.0
504,157 + MPMX19_05020 0.57 -1.8
504,158 - MPMX19_05020 0.57 -0.4
504,158 - MPMX19_05020 0.57 +0.1
504,241 + MPMX19_05020 0.61 +0.8
504,241 + MPMX19_05020 0.61 -1.0
504,241 + MPMX19_05020 0.61 -0.0
504,244 + MPMX19_05020 0.62 -1.3
504,244 + MPMX19_05020 0.62 +1.2
504,244 + MPMX19_05020 0.62 -0.4
504,244 + MPMX19_05020 0.62 -0.0
504,244 + MPMX19_05020 0.62 -0.3
504,244 + MPMX19_05020 0.62 -0.3
504,244 + MPMX19_05020 0.62 -0.5
504,244 + MPMX19_05020 0.62 +0.2
504,244 + MPMX19_05020 0.62 -0.3
504,244 + MPMX19_05020 0.62 -0.4
504,244 + MPMX19_05020 0.62 -0.6
504,244 + MPMX19_05020 0.62 -1.3
504,244 + MPMX19_05020 0.62 -1.3
504,244 + MPMX19_05020 0.62 -0.4
504,244 + MPMX19_05020 0.62 -0.8
504,244 + MPMX19_05020 0.62 -0.5
504,244 + MPMX19_05020 0.62 +0.9
504,244 + MPMX19_05020 0.62 +0.6
504,244 + MPMX19_05020 0.62 -1.6
504,244 + MPMX19_05020 0.62 -0.7
504,245 - MPMX19_05020 0.62 -0.3
504,245 - MPMX19_05020 0.62 +0.6
504,245 - MPMX19_05020 0.62 +0.6
504,245 - MPMX19_05020 0.62 -0.0
504,245 - MPMX19_05020 0.62 +1.1
504,245 - MPMX19_05020 0.62 +1.6
504,245 - MPMX19_05020 0.62 -0.3
504,245 - MPMX19_05020 0.62 +2.6
504,245 - MPMX19_05020 0.62 +0.2
504,245 - MPMX19_05020 0.62 +1.0
504,346 + MPMX19_05020 0.67 -1.3
504,346 + MPMX19_05020 0.67 +0.6
504,571 + MPMX19_05020 0.78 +0.6
504,571 + MPMX19_05020 0.78 -1.3
505,015 + -1.9
505,015 + -1.3
505,015 + -1.4
505,015 + -0.7
505,015 + -0.7
505,015 + -0.7
505,015 + -1.8
505,015 + -1.3
505,015 + +0.2
505,015 + -0.4
505,015 + +0.4
505,016 - -2.0
505,016 - -1.0
505,017 + -0.2
505,017 + +1.3
505,017 + +0.6
505,017 + -0.4
505,017 + -1.1
505,018 - +1.6
505,018 - -0.0
505,018 - +0.3
505,018 - -0.8
505,018 - +1.7
505,023 + +0.7
505,023 + -1.1
505,023 + +0.2
505,023 + -2.4
505,023 + +0.2
505,024 - +0.3
505,024 - -0.0
505,024 - +1.6
505,110 + -0.8
505,110 + -0.1
505,110 + -1.9
505,110 + -0.2
505,110 + +1.1
505,110 + +0.4
505,110 + +1.6
505,110 + +0.1
505,110 + -0.9
505,110 + -0.8
505,110 + -0.3
505,110 + +0.6
505,110 + -0.5
505,111 - -0.4
505,111 - -2.8
505,111 - +1.1
505,111 - -0.4
505,111 - +1.0
505,111 - -1.4
505,121 + +1.0
505,121 + +0.6
505,121 + -1.3
505,121 + -0.0
505,122 - -0.4
505,122 - +1.1
505,270 + -0.4
505,270 + -0.0
505,271 - +1.6
505,271 - -1.3
505,354 + -1.4
505,354 + -1.8
505,355 - +1.1
505,355 - -1.4
505,355 - -1.3
505,384 + MPMX19_05021 0.11 -0.3
505,385 - MPMX19_05021 0.11 -0.3
505,423 + MPMX19_05021 0.13 +1.0
505,424 - MPMX19_05021 0.13 +3.6
505,424 - MPMX19_05021 0.13 +0.7
505,424 - MPMX19_05021 0.13 -0.0
505,651 + MPMX19_05021 0.24 -0.6
505,651 + MPMX19_05021 0.24 +0.6
505,651 + MPMX19_05021 0.24 +0.6
505,652 - MPMX19_05021 0.24 -0.3
505,723 - MPMX19_05021 0.27 -1.0
505,747 + MPMX19_05021 0.28 +0.6
505,747 + MPMX19_05021 0.28 -0.8
505,747 + MPMX19_05021 0.28 +1.1
505,747 + MPMX19_05021 0.28 -0.8
505,747 + MPMX19_05021 0.28 +1.0
505,748 - MPMX19_05021 0.28 -1.6
505,748 - MPMX19_05021 0.28 -0.6
505,748 - MPMX19_05021 0.28 -1.4
505,748 - MPMX19_05021 0.28 -0.8
505,753 + MPMX19_05021 0.28 -1.3
505,754 - MPMX19_05021 0.28 -1.9
505,798 + MPMX19_05021 0.30 -1.4
505,798 + MPMX19_05021 0.30 -0.8
505,798 + MPMX19_05021 0.30 +0.3
505,799 - MPMX19_05021 0.30 -0.4
505,799 - MPMX19_05021 0.30 -0.8
505,915 + MPMX19_05021 0.36 -0.8
505,915 + MPMX19_05021 0.36 -0.0
505,916 - MPMX19_05021 0.36 +0.4
505,916 - MPMX19_05021 0.36 -0.6
505,916 - MPMX19_05021 0.36 -0.4
505,916 - MPMX19_05021 0.36 +0.2
505,916 - MPMX19_05021 0.36 -0.4
505,916 - MPMX19_05021 0.36 +1.1
505,916 - MPMX19_05021 0.36 -0.4
505,916 - MPMX19_05021 0.36 -1.2
505,916 - MPMX19_05021 0.36 -0.5
506,146 + MPMX19_05021 0.47 -2.7
506,146 + MPMX19_05021 0.47 +0.6
506,146 + MPMX19_05021 0.47 -0.8
506,147 - MPMX19_05021 0.47 -1.4
506,147 - MPMX19_05021 0.47 +1.0
506,147 - MPMX19_05021 0.47 -1.6
506,344 + MPMX19_05021 0.56 +1.2
506,344 + MPMX19_05021 0.56 -1.3
506,344 + MPMX19_05021 0.56 -0.3
506,344 + MPMX19_05021 0.56 -0.6
506,345 - MPMX19_05021 0.56 -0.3
506,345 - MPMX19_05021 0.56 -2.1
506,345 - MPMX19_05021 0.56 -0.3
506,530 + MPMX19_05021 0.64 +1.0
506,530 + MPMX19_05021 0.64 -0.0
506,530 + MPMX19_05021 0.64 +0.6
506,530 + MPMX19_05021 0.64 -0.4
506,531 - MPMX19_05021 0.64 -0.0
506,531 - MPMX19_05021 0.64 +1.1
506,531 - MPMX19_05021 0.64 -0.4
506,815 + MPMX19_05021 0.78 -0.3
506,827 + MPMX19_05021 0.78 -0.0
506,827 + MPMX19_05021 0.78 -0.6
506,828 - MPMX19_05021 0.78 -1.6
506,828 - MPMX19_05021 0.78 -1.3
507,197 - -2.1
507,197 - -0.3
507,220 + -0.0
507,220 + -0.0
507,220 + -0.8
507,221 - -0.0
507,221 - +2.0
507,221 - -0.8
507,221 - -0.8
507,221 - +0.2
507,221 - -0.3
507,221 - -1.9
507,221 - +0.6
507,291 + -1.4
507,362 + -1.3
507,420 + -1.6
507,420 + -0.4
507,420 + -2.0
507,420 + -0.4
507,420 + -0.2
507,421 - -1.0
507,421 - -0.7
507,421 - -0.8
507,421 - -0.9
507,421 - +0.2
507,421 - -1.6
507,421 - +0.9
507,441 + -0.1
507,441 + -1.0
507,441 + -0.2
507,441 + -0.4
507,441 + -0.6
507,441 + -0.0
507,441 + -1.6
507,441 + +0.4
507,441 + -1.4
507,441 + -0.7
507,441 + -3.2
507,442 - -1.2
507,442 - +1.6
507,442 - +0.7
507,442 - +1.2
507,442 - -1.6
507,442 - -0.7
507,442 - +0.2
507,442 - -1.4
507,461 + -0.9
507,462 - +0.2
507,474 + -0.1
507,474 + -1.9
507,475 - -0.8
507,475 - -0.5
507,475 - -1.8
507,475 - +0.7
507,765 + -1.4
507,766 - -1.0
507,766 - -0.1
507,766 - -1.1
507,766 - -1.8
507,766 - -1.1
507,801 + -0.6
507,801 + -2.6
507,802 - -0.6
507,945 + MPMX19_05022 0.30 +0.4
507,945 + MPMX19_05022 0.30 -1.8
507,945 + MPMX19_05022 0.30 -1.0
507,945 + MPMX19_05022 0.30 -0.4
507,945 + MPMX19_05022 0.30 -1.4
507,946 - MPMX19_05022 0.30 +0.7
507,946 - MPMX19_05022 0.30 -1.9
507,946 - MPMX19_05022 0.30 +1.2
507,946 - MPMX19_05022 0.30 -0.6
507,946 - MPMX19_05022 0.30 +1.2
507,946 - MPMX19_05022 0.30 +0.1
507,946 - MPMX19_05022 0.30 -0.2
507,946 - MPMX19_05022 0.30 +0.1
507,946 - MPMX19_05022 0.30 +1.0
507,946 - MPMX19_05022 0.30 -1.3
507,946 - MPMX19_05022 0.30 -0.0
508,104 + MPMX19_05022 0.53 -0.7
508,104 + MPMX19_05022 0.53 -0.0
508,104 + MPMX19_05022 0.53 +0.1
508,104 + MPMX19_05022 0.53 +0.2
508,105 - MPMX19_05022 0.53 -0.5
508,105 - MPMX19_05022 0.53 +0.9
508,105 - MPMX19_05022 0.53 -0.3
508,105 - MPMX19_05022 0.53 +0.1
508,105 - MPMX19_05022 0.53 -2.2
508,121 + MPMX19_05022 0.55 -0.6
508,121 + MPMX19_05022 0.55 +0.4
508,121 + MPMX19_05022 0.55 +1.0
508,122 - MPMX19_05022 0.55 -0.3
508,122 - MPMX19_05022 0.55 -0.4

Or see this region's nucleotide sequence