Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04959

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04958 and MPMX19_04959 are separated by 42 nucleotidesMPMX19_04959 and MPMX19_04960 are separated by 172 nucleotides MPMX19_04958: MPMX19_04958 - Methyl-accepting chemotaxis protein, at 420,845 to 422,419 _04958 MPMX19_04959: MPMX19_04959 - 5-oxoprolinase subunit A, at 422,462 to 423,223 _04959 MPMX19_04960: MPMX19_04960 - hypothetical protein, at 423,396 to 424,202 _04960 Position (kb) 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1at 422.606 kb on - strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.810 kb on + strand, within MPMX19_04959at 422.810 kb on + strand, within MPMX19_04959at 422.810 kb on + strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 423.057 kb on + strand, within MPMX19_04959at 423.058 kb on - strand, within MPMX19_04959at 423.058 kb on - strand, within MPMX19_04959at 423.221 kb on + strandat 423.221 kb on + strandat 423.221 kb on + strandat 423.221 kb on + strandat 423.221 kb on + strandat 423.222 kb on - strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.372 kb on - strandat 423.372 kb on - strandat 423.487 kb on + strand, within MPMX19_04960at 423.487 kb on + strand, within MPMX19_04960at 423.487 kb on + strand, within MPMX19_04960at 423.488 kb on - strand, within MPMX19_04960at 423.488 kb on - strand, within MPMX19_04960at 423.488 kb on - strand, within MPMX19_04960at 423.488 kb on - strand, within MPMX19_04960at 423.488 kb on - strand, within MPMX19_04960at 423.488 kb on - strand, within MPMX19_04960at 423.488 kb on - strand, within MPMX19_04960at 423.619 kb on + strand, within MPMX19_04960at 423.794 kb on + strand, within MPMX19_04960at 423.844 kb on + strand, within MPMX19_04960at 423.845 kb on - strand, within MPMX19_04960at 423.845 kb on - strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.905 kb on + strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.906 kb on - strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.907 kb on + strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.908 kb on - strand, within MPMX19_04960at 423.943 kb on + strand, within MPMX19_04960at 423.943 kb on + strand, within MPMX19_04960at 423.943 kb on + strand, within MPMX19_04960at 423.943 kb on + strand, within MPMX19_04960at 423.944 kb on - strand, within MPMX19_04960at 424.194 kb on + strandat 424.194 kb on + strandat 424.194 kb on + strandat 424.195 kb on - strandat 424.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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422,606 - MPMX19_04959 0.19 -2.5
422,790 + MPMX19_04959 0.43 +0.6
422,790 + MPMX19_04959 0.43 -0.0
422,790 + MPMX19_04959 0.43 -1.6
422,790 + MPMX19_04959 0.43 -0.7
422,790 + MPMX19_04959 0.43 -0.9
422,790 + MPMX19_04959 0.43 -0.6
422,790 + MPMX19_04959 0.43 -0.7
422,790 + MPMX19_04959 0.43 -0.5
422,791 - MPMX19_04959 0.43 -0.4
422,791 - MPMX19_04959 0.43 -0.4
422,791 - MPMX19_04959 0.43 +0.3
422,791 - MPMX19_04959 0.43 -0.8
422,791 - MPMX19_04959 0.43 +0.6
422,791 - MPMX19_04959 0.43 -2.2
422,791 - MPMX19_04959 0.43 -2.4
422,791 - MPMX19_04959 0.43 -1.6
422,791 - MPMX19_04959 0.43 -1.0
422,791 - MPMX19_04959 0.43 -1.2
422,791 - MPMX19_04959 0.43 -2.1
422,810 + MPMX19_04959 0.46 -2.5
422,810 + MPMX19_04959 0.46 +0.4
422,810 + MPMX19_04959 0.46 -0.0
422,811 - MPMX19_04959 0.46 -1.8
422,811 - MPMX19_04959 0.46 -1.1
422,811 - MPMX19_04959 0.46 -1.2
422,811 - MPMX19_04959 0.46 +1.2
422,811 - MPMX19_04959 0.46 +1.6
422,811 - MPMX19_04959 0.46 -0.9
422,975 + MPMX19_04959 0.67 -0.2
422,975 + MPMX19_04959 0.67 -1.0
422,975 + MPMX19_04959 0.67 -1.4
422,975 + MPMX19_04959 0.67 -0.0
422,975 + MPMX19_04959 0.67 -0.9
422,975 + MPMX19_04959 0.67 +0.2
422,975 + MPMX19_04959 0.67 -2.0
422,976 - MPMX19_04959 0.67 -0.0
422,976 - MPMX19_04959 0.67 -0.8
422,976 - MPMX19_04959 0.67 -1.8
422,976 - MPMX19_04959 0.67 -0.2
422,976 - MPMX19_04959 0.67 -0.2
422,976 - MPMX19_04959 0.67 -1.4
422,976 - MPMX19_04959 0.67 -1.5
422,976 - MPMX19_04959 0.67 -1.6
423,057 + MPMX19_04959 0.78 -1.5
423,058 - MPMX19_04959 0.78 -2.4
423,058 - MPMX19_04959 0.78 -1.9
423,221 + -0.8
423,221 + -1.4
423,221 + -0.8
423,221 + -1.4
423,221 + +0.6
423,222 - -0.8
423,250 + -0.8
423,250 + -0.0
423,250 + -1.6
423,250 + +1.6
423,250 + +0.0
423,250 + +0.3
423,250 + -2.0
423,251 - +0.1
423,251 - -1.1
423,251 - -0.4
423,251 - -1.2
423,251 - -0.9
423,251 - +1.1
423,372 - +1.0
423,372 - -1.0
423,487 + MPMX19_04960 0.11 +0.3
423,487 + MPMX19_04960 0.11 +1.0
423,487 + MPMX19_04960 0.11 -1.8
423,488 - MPMX19_04960 0.11 -1.7
423,488 - MPMX19_04960 0.11 -0.4
423,488 - MPMX19_04960 0.11 -1.3
423,488 - MPMX19_04960 0.11 -0.1
423,488 - MPMX19_04960 0.11 -1.0
423,488 - MPMX19_04960 0.11 +0.3
423,488 - MPMX19_04960 0.11 +1.4
423,619 + MPMX19_04960 0.28 -0.4
423,794 + MPMX19_04960 0.49 +1.6
423,844 + MPMX19_04960 0.56 -0.7
423,845 - MPMX19_04960 0.56 -1.4
423,845 - MPMX19_04960 0.56 -1.0
423,905 + MPMX19_04960 0.63 -1.4
423,905 + MPMX19_04960 0.63 -0.6
423,905 + MPMX19_04960 0.63 -0.4
423,905 + MPMX19_04960 0.63 -2.1
423,905 + MPMX19_04960 0.63 -0.9
423,905 + MPMX19_04960 0.63 -1.2
423,905 + MPMX19_04960 0.63 -0.8
423,905 + MPMX19_04960 0.63 -0.2
423,905 + MPMX19_04960 0.63 -1.3
423,905 + MPMX19_04960 0.63 -0.0
423,905 + MPMX19_04960 0.63 -0.6
423,905 + MPMX19_04960 0.63 -0.6
423,905 + MPMX19_04960 0.63 +0.6
423,905 + MPMX19_04960 0.63 -0.0
423,905 + MPMX19_04960 0.63 +0.8
423,905 + MPMX19_04960 0.63 +0.1
423,905 + MPMX19_04960 0.63 +0.1
423,906 - MPMX19_04960 0.63 -0.2
423,906 - MPMX19_04960 0.63 -0.9
423,906 - MPMX19_04960 0.63 -0.8
423,906 - MPMX19_04960 0.63 -0.2
423,906 - MPMX19_04960 0.63 -1.1
423,906 - MPMX19_04960 0.63 -1.4
423,906 - MPMX19_04960 0.63 -0.7
423,906 - MPMX19_04960 0.63 -1.3
423,906 - MPMX19_04960 0.63 -0.7
423,906 - MPMX19_04960 0.63 -1.9
423,906 - MPMX19_04960 0.63 +0.1
423,906 - MPMX19_04960 0.63 -1.0
423,906 - MPMX19_04960 0.63 +0.3
423,906 - MPMX19_04960 0.63 -1.1
423,906 - MPMX19_04960 0.63 -0.4
423,907 + MPMX19_04960 0.63 -1.6
423,907 + MPMX19_04960 0.63 -0.8
423,907 + MPMX19_04960 0.63 -0.8
423,907 + MPMX19_04960 0.63 -0.4
423,907 + MPMX19_04960 0.63 -0.2
423,907 + MPMX19_04960 0.63 -1.6
423,907 + MPMX19_04960 0.63 -1.4
423,907 + MPMX19_04960 0.63 -0.8
423,907 + MPMX19_04960 0.63 -0.0
423,907 + MPMX19_04960 0.63 -1.0
423,907 + MPMX19_04960 0.63 -0.4
423,907 + MPMX19_04960 0.63 +0.2
423,907 + MPMX19_04960 0.63 -1.2
423,907 + MPMX19_04960 0.63 -2.2
423,907 + MPMX19_04960 0.63 -1.2
423,907 + MPMX19_04960 0.63 -1.9
423,907 + MPMX19_04960 0.63 -1.3
423,907 + MPMX19_04960 0.63 +0.5
423,907 + MPMX19_04960 0.63 -0.6
423,907 + MPMX19_04960 0.63 -0.8
423,908 - MPMX19_04960 0.63 -2.9
423,908 - MPMX19_04960 0.63 -0.0
423,908 - MPMX19_04960 0.63 -0.9
423,908 - MPMX19_04960 0.63 -0.6
423,908 - MPMX19_04960 0.63 -0.4
423,908 - MPMX19_04960 0.63 +0.4
423,908 - MPMX19_04960 0.63 +0.4
423,908 - MPMX19_04960 0.63 -1.1
423,908 - MPMX19_04960 0.63 -0.7
423,908 - MPMX19_04960 0.63 -1.0
423,908 - MPMX19_04960 0.63 -1.8
423,908 - MPMX19_04960 0.63 -2.5
423,908 - MPMX19_04960 0.63 -1.8
423,943 + MPMX19_04960 0.68 +0.6
423,943 + MPMX19_04960 0.68 -0.2
423,943 + MPMX19_04960 0.68 -1.0
423,943 + MPMX19_04960 0.68 -1.9
423,944 - MPMX19_04960 0.68 -0.8
424,194 + -2.1
424,194 + -0.8
424,194 + -0.8
424,195 - -0.8
424,195 - -0.4

Or see this region's nucleotide sequence