Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03974 and MPMX19_03975 are separated by 207 nucleotides MPMX19_03975 and MPMX19_03976 are separated by 269 nucleotides MPMX19_03976 and MPMX19_03977 are separated by 149 nucleotides
MPMX19_03974: MPMX19_03974 - putative lipid II flippase MurJ, at 264,203 to 265,753
_03974
MPMX19_03975: MPMX19_03975 - Putative thiosulfate sulfurtransferase, at 265,961 to 266,803
_03975
MPMX19_03976: MPMX19_03976 - hypothetical protein, at 267,073 to 267,375
_03976
MPMX19_03977: MPMX19_03977 - Diaminopropionate ammonia-lyase, at 267,525 to 268,778
_03977
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.674 kb on - strand at 265.674 kb on - strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.499 kb on + strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.552 kb on + strand, within MPMX19_03975 at 266.553 kb on - strand, within MPMX19_03975 at 266.553 kb on - strand, within MPMX19_03975 at 266.642 kb on + strand, within MPMX19_03975 at 266.642 kb on + strand, within MPMX19_03975 at 266.642 kb on + strand, within MPMX19_03975 at 266.643 kb on - strand, within MPMX19_03975 at 266.667 kb on + strand, within MPMX19_03975 at 266.915 kb on - strand at 267.015 kb on + strand at 267.015 kb on + strand at 267.015 kb on + strand at 267.015 kb on + strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.033 kb on + strand at 267.033 kb on + strand at 267.033 kb on + strand at 267.034 kb on - strand at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.373 kb on + strand at 267.374 kb on - strand at 267.597 kb on + strand at 267.598 kb on - strand at 267.598 kb on - strand at 267.598 kb on - strand at 267.598 kb on - strand at 267.676 kb on - strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.798 kb on + strand, within MPMX19_03977 at 267.798 kb on + strand, within MPMX19_03977 at 267.798 kb on + strand, within MPMX19_03977 at 267.799 kb on - strand, within MPMX19_03977 at 267.799 kb on - strand, within MPMX19_03977 at 267.799 kb on - strand, within MPMX19_03977
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 264,986 + MPMX19_03974 0.50 -0.1 264,986 + MPMX19_03974 0.50 +0.6 264,986 + MPMX19_03974 0.50 +0.6 264,986 + MPMX19_03974 0.50 -0.3 264,986 + MPMX19_03974 0.50 +0.3 264,986 + MPMX19_03974 0.50 -0.6 264,986 + MPMX19_03974 0.50 +0.0 264,986 + MPMX19_03974 0.50 -1.3 264,986 + MPMX19_03974 0.50 -1.7 264,986 + MPMX19_03974 0.50 -0.4 264,986 + MPMX19_03974 0.50 +0.6 264,986 + MPMX19_03974 0.50 +0.2 264,986 + MPMX19_03974 0.50 -1.4 264,986 + MPMX19_03974 0.50 -0.2 264,986 + MPMX19_03974 0.50 +0.4 264,987 - MPMX19_03974 0.51 +0.5 264,987 - MPMX19_03974 0.51 -0.8 264,987 - MPMX19_03974 0.51 +0.8 264,987 - MPMX19_03974 0.51 +0.4 264,987 - MPMX19_03974 0.51 -0.6 264,987 - MPMX19_03974 0.51 +0.1 264,987 - MPMX19_03974 0.51 -1.3 264,987 - MPMX19_03974 0.51 -0.4 264,987 - MPMX19_03974 0.51 -0.1 264,987 - MPMX19_03974 0.51 -0.1 264,987 - MPMX19_03974 0.51 -0.2 264,992 + MPMX19_03974 0.51 +0.2 264,992 + MPMX19_03974 0.51 -1.1 264,992 + MPMX19_03974 0.51 -1.6 264,992 + MPMX19_03974 0.51 -1.7 264,992 + MPMX19_03974 0.51 -1.2 264,992 + MPMX19_03974 0.51 -0.7 264,992 + MPMX19_03974 0.51 -0.7 264,993 - MPMX19_03974 0.51 -3.3 264,993 - MPMX19_03974 0.51 -0.7 264,993 - MPMX19_03974 0.51 -1.9 264,993 - MPMX19_03974 0.51 +0.3 264,993 - MPMX19_03974 0.51 -0.7 264,993 - MPMX19_03974 0.51 +1.0 264,993 - MPMX19_03974 0.51 -1.2 264,993 - MPMX19_03974 0.51 -1.4 264,993 - MPMX19_03974 0.51 +0.6 264,993 - MPMX19_03974 0.51 -1.1 264,993 - MPMX19_03974 0.51 -2.8 264,993 - MPMX19_03974 0.51 +0.9 264,995 + MPMX19_03974 0.51 -0.9 264,995 + MPMX19_03974 0.51 +0.3 264,995 + MPMX19_03974 0.51 +0.2 264,995 + MPMX19_03974 0.51 -0.7 264,995 + MPMX19_03974 0.51 +0.6 264,995 + MPMX19_03974 0.51 -0.6 264,995 + MPMX19_03974 0.51 -0.4 264,996 - MPMX19_03974 0.51 +0.0 264,996 - MPMX19_03974 0.51 -1.0 264,996 - MPMX19_03974 0.51 -0.6 264,996 - MPMX19_03974 0.51 -1.1 264,996 - MPMX19_03974 0.51 +0.2 264,996 - MPMX19_03974 0.51 -0.5 264,996 - MPMX19_03974 0.51 +0.4 265,265 + MPMX19_03974 0.68 -1.1 265,265 + MPMX19_03974 0.68 -1.1 265,265 + MPMX19_03974 0.68 +0.0 265,265 + MPMX19_03974 0.68 -2.3 265,265 + MPMX19_03974 0.68 -0.3 265,265 + MPMX19_03974 0.68 +0.2 265,266 - MPMX19_03974 0.69 -1.2 265,266 - MPMX19_03974 0.69 -0.1 265,266 - MPMX19_03974 0.69 +0.6 265,266 - MPMX19_03974 0.69 +0.0 265,266 - MPMX19_03974 0.69 -0.9 265,319 + MPMX19_03974 0.72 -0.2 265,319 + MPMX19_03974 0.72 -0.6 265,319 + MPMX19_03974 0.72 -1.4 265,319 + MPMX19_03974 0.72 -0.4 265,319 + MPMX19_03974 0.72 -0.2 265,320 - MPMX19_03974 0.72 +0.7 265,320 - MPMX19_03974 0.72 -0.9 265,320 - MPMX19_03974 0.72 -0.1 265,320 - MPMX19_03974 0.72 -1.4 265,320 - MPMX19_03974 0.72 -0.2 265,320 - MPMX19_03974 0.72 -1.1 265,320 - MPMX19_03974 0.72 -0.4 265,320 - MPMX19_03974 0.72 -1.0 265,320 - MPMX19_03974 0.72 -0.1 265,673 + +0.7 265,673 + -2.0 265,673 + -0.5 265,673 + -0.4 265,673 + -1.3 265,673 + +0.5 265,674 - -1.0 265,674 - -0.7 265,751 + -0.6 265,751 + -0.3 265,751 + +0.6 265,751 + -1.9 265,751 + +1.2 265,751 + -1.0 265,751 + +0.1 265,751 + +0.0 265,751 + -1.5 265,751 + -1.7 265,751 + -0.6 265,752 - -0.6 265,752 - -0.4 265,752 - -0.7 265,752 - +0.4 265,752 - +0.8 265,752 - -1.3 265,752 - -1.4 265,752 - +0.3 265,830 + +0.5 265,830 + -0.3 265,830 + -1.1 265,830 + -0.5 265,830 + -1.9 265,949 + -2.0 265,949 + -1.5 265,949 + +0.6 265,949 + -0.2 265,949 + -0.1 265,949 + -1.0 265,949 + +0.2 265,950 - -1.6 265,950 - -0.3 265,950 - +0.0 265,950 - +0.4 265,950 - -1.0 265,950 - -1.4 265,950 - -0.5 265,950 - +0.3 265,950 - -0.8 266,022 + -0.7 266,022 + -1.4 266,022 + -1.9 266,022 + -0.2 266,022 + +0.0 266,022 + -0.9 266,022 + -0.1 266,022 + -0.5 266,023 - -0.5 266,023 - -0.4 266,023 - -1.5 266,023 - -0.5 266,023 - +0.3 266,023 - -1.7 266,023 - +0.6 266,023 - -0.6 266,023 - -0.4 266,499 + MPMX19_03975 0.64 -0.6 266,500 - MPMX19_03975 0.64 -1.5 266,500 - MPMX19_03975 0.64 +0.6 266,500 - MPMX19_03975 0.64 -0.7 266,500 - MPMX19_03975 0.64 -1.6 266,552 + MPMX19_03975 0.70 -0.9 266,553 - MPMX19_03975 0.70 -0.4 266,553 - MPMX19_03975 0.70 -3.0 266,642 + MPMX19_03975 0.81 -1.3 266,642 + MPMX19_03975 0.81 -0.6 266,642 + MPMX19_03975 0.81 -0.2 266,643 - MPMX19_03975 0.81 -1.0 266,667 + MPMX19_03975 0.84 +0.4 266,915 - -1.1 267,015 + +1.0 267,015 + -2.1 267,015 + +0.6 267,015 + -1.7 267,016 - +1.6 267,016 - -1.0 267,016 - +0.4 267,016 - +0.6 267,016 - +0.4 267,032 - +0.6 267,032 - -0.2 267,032 - -0.4 267,033 + -0.4 267,033 + -1.2 267,033 + +0.0 267,034 - -0.4 267,268 + MPMX19_03976 0.64 +0.0 267,268 + MPMX19_03976 0.64 +0.4 267,268 + MPMX19_03976 0.64 +1.2 267,268 + MPMX19_03976 0.64 -0.4 267,268 + MPMX19_03976 0.64 -0.5 267,268 + MPMX19_03976 0.64 +0.4 267,268 + MPMX19_03976 0.64 -0.4 267,268 + MPMX19_03976 0.64 +0.9 267,268 + MPMX19_03976 0.64 -0.2 267,269 - MPMX19_03976 0.65 +0.2 267,269 - MPMX19_03976 0.65 -0.3 267,269 - MPMX19_03976 0.65 +0.1 267,269 - MPMX19_03976 0.65 +0.3 267,269 - MPMX19_03976 0.65 -0.2 267,269 - MPMX19_03976 0.65 -0.4 267,269 - MPMX19_03976 0.65 +0.5 267,269 - MPMX19_03976 0.65 +0.8 267,269 - MPMX19_03976 0.65 +0.6 267,373 + -0.7 267,374 - +1.2 267,597 + -0.2 267,598 - -0.2 267,598 - -0.9 267,598 - +2.0 267,598 - -1.4 267,676 - MPMX19_03977 0.12 +1.0 267,741 + MPMX19_03977 0.17 -1.4 267,741 + MPMX19_03977 0.17 -1.7 267,741 + MPMX19_03977 0.17 +0.5 267,741 + MPMX19_03977 0.17 -1.2 267,741 + MPMX19_03977 0.17 +1.2 267,741 + MPMX19_03977 0.17 +0.1 267,741 + MPMX19_03977 0.17 -0.8 267,741 + MPMX19_03977 0.17 -0.6 267,741 + MPMX19_03977 0.17 -0.4 267,742 - MPMX19_03977 0.17 -0.5 267,742 - MPMX19_03977 0.17 -0.4 267,742 - MPMX19_03977 0.17 -1.6 267,742 - MPMX19_03977 0.17 +0.3 267,742 - MPMX19_03977 0.17 -0.5 267,742 - MPMX19_03977 0.17 -0.3 267,742 - MPMX19_03977 0.17 +0.0 267,742 - MPMX19_03977 0.17 -0.6 267,742 - MPMX19_03977 0.17 +0.1 267,742 - MPMX19_03977 0.17 +0.7 267,798 + MPMX19_03977 0.22 -0.6 267,798 + MPMX19_03977 0.22 -0.7 267,798 + MPMX19_03977 0.22 -0.6 267,799 - MPMX19_03977 0.22 +0.1 267,799 - MPMX19_03977 0.22 -0.4 267,799 - MPMX19_03977 0.22 -1.3
Or see this region's nucleotide sequence