Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03107

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03106 and MPMX19_03107 are separated by 5 nucleotidesMPMX19_03107 and MPMX19_03108 are separated by 14 nucleotides MPMX19_03106: MPMX19_03106 - hypothetical protein, at 386,331 to 387,962 _03106 MPMX19_03107: MPMX19_03107 - hypothetical protein, at 387,968 to 389,068 _03107 MPMX19_03108: MPMX19_03108 - hypothetical protein, at 389,083 to 394,401 _03108 Position (kb) 387 388 389 390Strain fitness (log2 ratio) -2 -1 0 1 2 3at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.331 kb on - strand, within MPMX19_03106at 387.331 kb on - strand, within MPMX19_03106at 387.444 kb on + strand, within MPMX19_03106at 387.848 kb on + strandat 387.849 kb on - strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.941 kb on - strandat 387.941 kb on - strandat 387.941 kb on - strandat 387.941 kb on - strandat 387.941 kb on - strandat 388.193 kb on + strand, within MPMX19_03107at 388.194 kb on - strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.265 kb on - strand, within MPMX19_03107at 388.265 kb on - strand, within MPMX19_03107at 388.571 kb on + strand, within MPMX19_03107at 388.572 kb on - strand, within MPMX19_03107at 388.572 kb on - strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.740 kb on - strand, within MPMX19_03107at 388.740 kb on - strand, within MPMX19_03107at 388.767 kb on - strand, within MPMX19_03107at 389.530 kb on + strandat 389.530 kb on + strandat 389.530 kb on + strandat 389.530 kb on + strandat 389.530 kb on + strandat 389.530 kb on + strandat 389.531 kb on - strandat 389.531 kb on - strandat 389.531 kb on - strandat 389.668 kb on + strand, within MPMX19_03108at 389.668 kb on + strand, within MPMX19_03108at 389.668 kb on + strand, within MPMX19_03108at 389.668 kb on + strand, within MPMX19_03108at 389.669 kb on - strand, within MPMX19_03108at 389.669 kb on - strand, within MPMX19_03108at 389.669 kb on - strand, within MPMX19_03108at 389.669 kb on - strand, within MPMX19_03108at 389.669 kb on - strand, within MPMX19_03108at 389.698 kb on + strand, within MPMX19_03108at 389.698 kb on + strand, within MPMX19_03108at 389.698 kb on + strand, within MPMX19_03108at 389.698 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.737 kb on + strand, within MPMX19_03108at 389.738 kb on - strand, within MPMX19_03108at 389.738 kb on - strand, within MPMX19_03108at 389.738 kb on - strand, within MPMX19_03108at 389.738 kb on - strand, within MPMX19_03108at 389.738 kb on - strand, within MPMX19_03108at 389.738 kb on - strand, within MPMX19_03108at 389.738 kb on - strand, within MPMX19_03108at 389.755 kb on + strand, within MPMX19_03108at 389.755 kb on + strand, within MPMX19_03108at 389.756 kb on - strand, within MPMX19_03108at 390.034 kb on + strand, within MPMX19_03108at 390.035 kb on - strand, within MPMX19_03108at 390.035 kb on - strand, within MPMX19_03108

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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387,045 + MPMX19_03106 0.44 +0.7
387,045 + MPMX19_03106 0.44 -1.4
387,045 + MPMX19_03106 0.44 -0.1
387,045 + MPMX19_03106 0.44 -0.3
387,045 + MPMX19_03106 0.44 -1.5
387,045 + MPMX19_03106 0.44 +0.1
387,045 + MPMX19_03106 0.44 -0.5
387,046 - MPMX19_03106 0.44 -1.0
387,046 - MPMX19_03106 0.44 +0.8
387,046 - MPMX19_03106 0.44 +0.6
387,046 - MPMX19_03106 0.44 -1.0
387,046 - MPMX19_03106 0.44 -0.6
387,046 - MPMX19_03106 0.44 +0.7
387,111 + MPMX19_03106 0.48 +0.7
387,111 + MPMX19_03106 0.48 -0.4
387,111 + MPMX19_03106 0.48 -1.3
387,111 + MPMX19_03106 0.48 -1.8
387,111 + MPMX19_03106 0.48 -0.2
387,111 + MPMX19_03106 0.48 -0.4
387,111 + MPMX19_03106 0.48 -2.1
387,111 + MPMX19_03106 0.48 -0.3
387,112 - MPMX19_03106 0.48 +0.8
387,112 - MPMX19_03106 0.48 -1.9
387,112 - MPMX19_03106 0.48 -0.7
387,112 - MPMX19_03106 0.48 +0.1
387,112 - MPMX19_03106 0.48 -0.9
387,112 - MPMX19_03106 0.48 -2.0
387,112 - MPMX19_03106 0.48 +0.1
387,315 + MPMX19_03106 0.60 -0.8
387,315 + MPMX19_03106 0.60 -0.2
387,315 + MPMX19_03106 0.60 +0.1
387,315 + MPMX19_03106 0.60 -1.1
387,315 + MPMX19_03106 0.60 -0.9
387,315 + MPMX19_03106 0.60 +0.3
387,315 + MPMX19_03106 0.60 -0.8
387,315 + MPMX19_03106 0.60 +0.1
387,315 + MPMX19_03106 0.60 +0.1
387,316 - MPMX19_03106 0.60 +0.3
387,316 - MPMX19_03106 0.60 -1.1
387,316 - MPMX19_03106 0.60 -0.6
387,316 - MPMX19_03106 0.60 -0.3
387,316 - MPMX19_03106 0.60 -0.7
387,316 - MPMX19_03106 0.60 -1.0
387,316 - MPMX19_03106 0.60 +1.0
387,316 - MPMX19_03106 0.60 +0.8
387,316 - MPMX19_03106 0.60 +1.8
387,316 - MPMX19_03106 0.60 -0.8
387,316 - MPMX19_03106 0.60 -1.0
387,316 - MPMX19_03106 0.60 -0.0
387,316 - MPMX19_03106 0.60 -0.1
387,331 - MPMX19_03106 0.61 +0.0
387,331 - MPMX19_03106 0.61 -0.4
387,444 + MPMX19_03106 0.68 -1.3
387,848 + -0.7
387,849 - +0.7
387,940 + +0.5
387,940 + +1.1
387,940 + -0.9
387,940 + -1.3
387,940 + +0.4
387,940 + -1.0
387,941 - -0.1
387,941 - +1.9
387,941 - -0.3
387,941 - +1.0
387,941 - -0.9
388,193 + MPMX19_03107 0.20 -0.3
388,194 - MPMX19_03107 0.21 +0.2
388,211 + MPMX19_03107 0.22 -1.8
388,211 + MPMX19_03107 0.22 -0.8
388,211 + MPMX19_03107 0.22 -0.6
388,211 + MPMX19_03107 0.22 -1.0
388,211 + MPMX19_03107 0.22 -0.2
388,211 + MPMX19_03107 0.22 -0.4
388,211 + MPMX19_03107 0.22 +0.7
388,212 - MPMX19_03107 0.22 +0.6
388,212 - MPMX19_03107 0.22 -0.4
388,212 - MPMX19_03107 0.22 -0.9
388,212 - MPMX19_03107 0.22 +0.7
388,262 + MPMX19_03107 0.27 -1.1
388,262 + MPMX19_03107 0.27 -0.3
388,262 + MPMX19_03107 0.27 -0.3
388,262 + MPMX19_03107 0.27 +0.3
388,262 + MPMX19_03107 0.27 -1.0
388,262 + MPMX19_03107 0.27 +1.1
388,262 + MPMX19_03107 0.27 -0.1
388,262 + MPMX19_03107 0.27 +0.1
388,263 - MPMX19_03107 0.27 +0.7
388,263 - MPMX19_03107 0.27 +0.5
388,263 - MPMX19_03107 0.27 -1.7
388,263 - MPMX19_03107 0.27 -0.0
388,263 - MPMX19_03107 0.27 +0.3
388,263 - MPMX19_03107 0.27 +1.2
388,263 - MPMX19_03107 0.27 +0.3
388,263 - MPMX19_03107 0.27 -1.1
388,265 - MPMX19_03107 0.27 +0.1
388,265 - MPMX19_03107 0.27 -1.2
388,571 + MPMX19_03107 0.55 -1.8
388,572 - MPMX19_03107 0.55 -0.1
388,572 - MPMX19_03107 0.55 -0.1
388,739 + MPMX19_03107 0.70 -0.9
388,739 + MPMX19_03107 0.70 +0.1
388,739 + MPMX19_03107 0.70 +0.4
388,739 + MPMX19_03107 0.70 +0.6
388,739 + MPMX19_03107 0.70 -1.1
388,740 - MPMX19_03107 0.70 +0.5
388,740 - MPMX19_03107 0.70 -1.5
388,767 - MPMX19_03107 0.73 -0.9
389,530 + -0.5
389,530 + -1.4
389,530 + +0.4
389,530 + +0.2
389,530 + +0.1
389,530 + -0.4
389,531 - -0.1
389,531 - -0.2
389,531 - -0.9
389,668 + MPMX19_03108 0.11 +0.1
389,668 + MPMX19_03108 0.11 -0.7
389,668 + MPMX19_03108 0.11 +1.0
389,668 + MPMX19_03108 0.11 -1.0
389,669 - MPMX19_03108 0.11 +0.4
389,669 - MPMX19_03108 0.11 -1.3
389,669 - MPMX19_03108 0.11 -0.3
389,669 - MPMX19_03108 0.11 -0.3
389,669 - MPMX19_03108 0.11 -0.6
389,698 + MPMX19_03108 0.12 +0.1
389,698 + MPMX19_03108 0.12 -0.7
389,698 + MPMX19_03108 0.12 +0.6
389,698 + MPMX19_03108 0.12 -0.4
389,737 + MPMX19_03108 0.12 +0.4
389,737 + MPMX19_03108 0.12 -0.0
389,737 + MPMX19_03108 0.12 +0.6
389,737 + MPMX19_03108 0.12 -0.7
389,737 + MPMX19_03108 0.12 +0.0
389,737 + MPMX19_03108 0.12 +0.3
389,737 + MPMX19_03108 0.12 +0.7
389,737 + MPMX19_03108 0.12 +2.9
389,737 + MPMX19_03108 0.12 +0.6
389,737 + MPMX19_03108 0.12 -0.6
389,737 + MPMX19_03108 0.12 -2.5
389,737 + MPMX19_03108 0.12 -1.0
389,738 - MPMX19_03108 0.12 -0.4
389,738 - MPMX19_03108 0.12 +0.6
389,738 - MPMX19_03108 0.12 -0.6
389,738 - MPMX19_03108 0.12 -0.3
389,738 - MPMX19_03108 0.12 -1.4
389,738 - MPMX19_03108 0.12 -0.1
389,738 - MPMX19_03108 0.12 -0.4
389,755 + MPMX19_03108 0.13 +0.7
389,755 + MPMX19_03108 0.13 +1.2
389,756 - MPMX19_03108 0.13 -0.3
390,034 + MPMX19_03108 0.18 -0.6
390,035 - MPMX19_03108 0.18 -0.2
390,035 - MPMX19_03108 0.18 -0.3

Or see this region's nucleotide sequence